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Ignore kdevelop & kate project files.
2014-01-08
Diane Trout
Ignore kdevelop & kate project files.
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2014-01-08
Diane Trout
Rename stripNamespace strip_namespace
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2013-12-23
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2013-12-23
Diane Trout
update settings for new location of WSGI_APPLICATION...
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2013-12-23
Diane Trout
fix quote typos with the {% static %} template tag
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2013-12-23
Diane Trout
Move wsgi into the actual project root.
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2013-12-17
Diane Trout
remove some test code debugging print statements
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2013-12-17
Diane Trout
Update WSGI_APPLICATION to point to the updated location...
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2013-12-17
Diane Trout
Inventory works, even though its was hidden between...
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2013-12-17
Diane Trout
move an example result directory into git and use it...
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2013-12-17
Diane Trout
Merge branch 'django1.4'
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2013-12-17
Diane Trout
Update requirements to require diango 1.6
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2013-12-17
Diane Trout
Start simplyfing settings by using from settings_local...
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2013-12-17
Diane Trout
add new wsgi.py driver
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2013-12-17
Diane Trout
Update templates to consistently use {% static %} instead...
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2013-12-17
Diane Trout
Move loading DTD into a function as the call caused...
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2013-12-17
Diane Trout
move django imports around, change one function call...
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2013-12-17
Diane Trout
Update exception caught for newer django?
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2013-12-17
Diane Trout
use url function call for url definition instead of...
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2013-12-17
Diane Trout
Move use of settings default into the function instead...
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2013-12-10
Diane Trout
Update manage script to django 1.6
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2013-12-10
Diane Trout
Being able to filter on paired end runs might be useful
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2013-12-10
Diane Trout
remove deprecated module django.contrib.databrowse
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2013-12-10
Diane Trout
With 1.6 boolean field changed to default Null, so...
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2013-12-10
Diane Trout
Django 1.6 is pickier about enforcing referential integrity
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2013-12-10
Diane Trout
Fix urls patterns import to be compatible with django 1.6
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2013-12-10
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...
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2013-12-10
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...
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2013-12-09
Diane Trout
Add new paired library types to our hackish list for...
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2013-12-06
Diane Trout
Attempt to be robust to not having an alignment in...
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2013-12-06
Diane Trout
Attempt to be robust to not having an alignment in...
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2013-12-06
Diane Trout
After implementing proper tests get a working implementation...
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2013-12-06
Diane Trout
After implementing proper tests get a working implementation...
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2013-12-05
Diane Trout
fix typo
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2013-12-05
Diane Trout
fix typo
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2013-12-05
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...
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2013-12-05
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...
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2013-12-05
Diane Trout
Recent IPAR xml config blocks include the runfolder...
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2013-12-05
Diane Trout
Update for UCSC's validate manifest 1.7
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2013-12-05
Diane Trout
Provide reporting of what command failed when bigWigInfo...
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2013-12-05
Diane Trout
Recent IPAR xml config blocks include the runfolder...
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2013-12-05
Diane Trout
Add a way to report what url was failing
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2013-12-02
Diane Trout
Catch and report another class of exception
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2013-10-21
Diane Trout
Merge remote-tracking branch 'brisby/django1.4' into...
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2013-10-21
Diane Trout
Pass additional information to the trackhub.
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2013-10-21
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...
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2013-10-17
Diane Trout
Merge branch 'master' into django1.4
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2013-10-17
Diane Trout
Add command line feature to srf command
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2013-10-17
Diane Trout
Dynamically respond to the number of lanes.
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2013-10-17
Diane Trout
Fix typo.
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2013-10-17
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...
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2013-10-17
Diane Trout
Implement a wrapper around bigWigInfo to report bigWig...
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2013-10-11
Diane Trout
Make it possible to set a label on a track.
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2013-10-09
Diane Trout
add replaces / replace_reason generation to trackhub...
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2013-10-09
Diane Trout
remove spurious newline
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2013-10-08
Diane Trout
Be more forgiving about the md5sum filename path
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2013-10-08
Diane Trout
Add helpful logging information to explain missing...
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2013-09-24
Diane Trout
Share more code to generate result tree.
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2013-08-12
Diane Trout
Update test data for renamed library type.
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2013-08-10
Diane Trout
Add sortOrder and filtering parameters to the trackhub.
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2013-07-22
Diane Trout
Move version finding code into the util directory.
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2013-07-22
Diane Trout
Test changes to submission code.
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2013-07-22
Diane Trout
Generate manifest.txt files for submitting to ENCODE3.
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2013-07-22
Diane Trout
turtle writing improvements.
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2013-07-22
Diane Trout
Add a generator that returns analysis nodes from a...
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2013-07-20
Diane Trout
Add python namespace for encode3 RDF namespace
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2013-07-18
Diane Trout
Add function to list the names for submissions from...
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2013-07-17
Diane Trout
Add function to parse scp / ssh style URLs.
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2013-07-16
Diane Trout
Deleting commented out code.
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2013-07-08
Diane Trout
Update test to work with species -> species_name rename.
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2013-07-03
Diane Trout
Generate manifest files for ENCODE3
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2013-07-01
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...
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2013-07-01
Diane Trout
Add the option to copy tree in addition to making a...
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2013-07-01
Diane Trout
Initial attempt to start generating trackHubs and manifest...
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2013-07-01
Diane Trout
type checking more detailed than Literal doesn't work...
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2013-06-28
Diane Trout
Add option to copy source files for a submission.
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2013-06-18
Diane Trout
Further improve reliability of make_tree_from.
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2013-06-18
Diane Trout
copy_tree_from wasn't actually making any symlinks.
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2013-06-18
Diane Trout
Update tests for new version of redland rdf lib.
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2013-06-18
Diane Trout
Remove deprecated adminmedia template tag from loader.
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2013-06-18
Diane Trout
Replace deprecated django.contrib adminmedia with staticfiles.
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2013-06-18
Diane Trout
Use proper User model import.
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2013-02-01
Diane Trout
Preliminary implementation of trackDb generation.
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2013-02-01
Diane Trout
Forgot to import an exception I used
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2013-02-01
Diane Trout
Make a sample key list to go along with our lane list
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2013-01-16
diane
Add more entries to genome version detection map.
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2013-01-16
Diane Trout
Support scanning HiSeq runs with multiple analyses.
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2013-01-16
Diane Trout
Thrown an exception if we can't parse base calling...
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2013-01-15
Diane Trout
Start making documentation for htsworkflow.
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2013-01-09
Diane Trout
A better resolution to a possible circular dependency.
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2013-01-09
Diane Trout
Don't accidentally transform an object into a tuple.
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2013-01-08
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...
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2013-01-08
Diane Trout
Try to make Aligned result directories optional in...
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2013-01-08
Diane Trout
Add unaligned stats files to hiseq test case
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2013-01-08
Diane Trout
Tweak timestamp format.
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2012-12-14
Diane Trout
Gerald's time-stamp format was inconsistent.
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2012-12-14
Diane Trout
Make my ChangeList sub-class compatibile with Django 1.3
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2012-12-13
Diane Trout
Make the inventory pages work with the new HTSChangeList.
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2012-12-13
Diane Trout
Django 1.4 requires the csrf token for posts.
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2012-12-13
Diane Trout
Use specific time formatting instead of locale '%c'
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