projects
/
htsworkflow.git
/ search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅ next
remove file created by typoing file name
2014-06-10
Diane Trout
remove file created by typoing file name
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Change unittest2 back into unittest.
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Postgresql needed the default FlowCellModel to be created...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Change experiments.FileType.regex to a text field so...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Provide human readable name for flowcell model
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Use flowcell model information to estimate how long...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Add flowcell model type to the flowcell model
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Explicitly list initial_data.json for the test data...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Initial conversion of HTSWorkflow to use south migrations.
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Add post_json as some DCC objects are created with...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Rename headers to json_headers for requests (seemed...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Updates to jsonld context for the DCC schemas.
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Update test_encoded test cases due to https now being...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
DCC switched to https
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Update fastqname code & test code to better support...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Directly generate compressed fastq files from HiSeq...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
the filename templates were moved from condorfastq...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Indicate when desplit_fastq didn't get any files to...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Make sure we can load a run file that lacks alignment...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
For some reason the previous integrety fixes, added...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Postgresql has referential integrety checking.
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Ignore the path when comparing filenames from the md5...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
use autoopen to access fastq files
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Start implementing tool to compute library fastq quality
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Just use the python 2 url parsers instead of trying...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Update timestamps in inventory app test data to be...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
point default flowcell directory to test data
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
add default values for some application specific values
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Configure default STATICFILES_DIRS for static files...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Mathematica had a suggestion for a fastq mime type...
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Regex pattern was wrong.
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Convert more timestamps to include timezone
commit
|
commitdiff
|
tree
2014-06-10
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
commit
|
commitdiff
|
tree
2014-02-12
Diane Trout
Allow arbitrarily long regexes in experiment.FileType...
commit
|
commitdiff
|
tree
2014-01-17
Diane Trout
Remove django test environment setup code.
commit
|
commitdiff
|
tree
2014-01-17
Diane Trout
Use SkipIf to skip copier tests if benderjab isn't...
commit
|
commitdiff
|
tree
2014-01-17
Diane Trout
Convert timestamps from the runfolder file to a timezone...
commit
|
commitdiff
|
tree
2014-01-17
Diane Trout
django provides django.utils.timezone.now to return...
commit
|
commitdiff
|
tree
2014-01-17
Diane Trout
Set default timezone to where our lab is located
commit
|
commitdiff
|
tree
2014-01-17
Diane Trout
Update test data dates to have timezone information
commit
|
commitdiff
|
tree
2014-01-17
Diane Trout
Fix test to use newer django database dictionary instead...
commit
|
commitdiff
|
tree
2014-01-17
Diane Trout
Re-add default email addresses for email notification...
commit
|
commitdiff
|
tree
2014-01-17
Diane Trout
Implement a encoded search to json-ld wrapper.
commit
|
commitdiff
|
tree
2014-01-17
Diane Trout
make sure @vocab url has a trailing #. Its needed to...
commit
|
commitdiff
|
tree
2014-01-17
Diane Trout
Use new context creation functions to attach context...
commit
|
commitdiff
|
tree
2014-01-17
Diane Trout
Add functions to create a json-ld context and add namespaces...
commit
|
commitdiff
|
tree
2014-01-15
Diane Trout
Utility class for accessing ENCODE3's submit / data...
commit
|
commitdiff
|
tree
2014-01-15
Diane Trout
Adapter to use PyLD's json-ld parser to add triples...
commit
|
commitdiff
|
tree
2014-01-15
Diane Trout
remove some trailing whitespace
commit
|
commitdiff
|
tree
2014-01-15
Diane Trout
remove some trailing whitespace
commit
|
commitdiff
|
tree
2014-01-15
Diane Trout
Add option to get_model to disable RDF graph context.
commit
|
commitdiff
|
tree
2014-01-08
Diane Trout
Ignore kdevelop & kate project files.
commit
|
commitdiff
|
tree
2014-01-08
Diane Trout
Rename stripNamespace strip_namespace
commit
|
commitdiff
|
tree
2013-12-17
Diane Trout
remove some test code debugging print statements
commit
|
commitdiff
|
tree
2013-12-17
Diane Trout
Inventory works, even though its was hidden between...
commit
|
commitdiff
|
tree
2013-12-17
Diane Trout
move an example result directory into git and use it...
commit
|
commitdiff
|
tree
2013-12-17
Diane Trout
Merge branch 'django1.4'
commit
|
commitdiff
|
tree
2013-12-17
Diane Trout
Update requirements to require diango 1.6
commit
|
commitdiff
|
tree
2013-12-10
Diane Trout
Update manage script to django 1.6
commit
|
commitdiff
|
tree
2013-12-10
Diane Trout
Being able to filter on paired end runs might be useful
commit
|
commitdiff
|
tree
2013-12-10
Diane Trout
remove deprecated module django.contrib.databrowse
commit
|
commitdiff
|
tree
2013-12-10
Diane Trout
With 1.6 boolean field changed to default Null, so...
commit
|
commitdiff
|
tree
2013-12-10
Diane Trout
Django 1.6 is pickier about enforcing referential integrity
commit
|
commitdiff
|
tree
2013-12-10
Diane Trout
Fix urls patterns import to be compatible with django 1.6
commit
|
commitdiff
|
tree
2013-12-10
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...
commit
|
commitdiff
|
tree
2013-12-06
Diane Trout
Attempt to be robust to not having an alignment in...
commit
|
commitdiff
|
tree
2013-12-06
Diane Trout
After implementing proper tests get a working implementation...
commit
|
commitdiff
|
tree
2013-12-05
Diane Trout
fix typo
commit
|
commitdiff
|
tree
2013-12-05
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...
commit
|
commitdiff
|
tree
2013-10-21
Diane Trout
Merge remote-tracking branch 'brisby/django1.4' into...
commit
|
commitdiff
|
tree
2013-10-21
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...
commit
|
commitdiff
|
tree
2013-10-17
Diane Trout
Merge branch 'master' into django1.4
commit
|
commitdiff
|
tree
2013-10-17
Diane Trout
Implement a wrapper around bigWigInfo to report bigWig...
commit
|
commitdiff
|
tree
2013-09-24
Diane Trout
Share more code to generate result tree.
commit
|
commitdiff
|
tree
2013-08-12
Diane Trout
Update test data for renamed library type.
commit
|
commitdiff
|
tree
2013-08-10
Diane Trout
Add sortOrder and filtering parameters to the trackhub.
commit
|
commitdiff
|
tree
2013-07-22
Diane Trout
Move version finding code into the util directory.
commit
|
commitdiff
|
tree
2013-07-22
Diane Trout
Test changes to submission code.
commit
|
commitdiff
|
tree
2013-07-22
Diane Trout
Generate manifest.txt files for submitting to ENCODE3.
commit
|
commitdiff
|
tree
2013-07-22
Diane Trout
turtle writing improvements.
commit
|
commitdiff
|
tree
2013-07-22
Diane Trout
Add a generator that returns analysis nodes from a...
commit
|
commitdiff
|
tree
2013-07-20
Diane Trout
Add python namespace for encode3 RDF namespace
commit
|
commitdiff
|
tree
2013-07-18
Diane Trout
Add function to list the names for submissions from...
commit
|
commitdiff
|
tree
2013-07-17
Diane Trout
Add function to parse scp / ssh style URLs.
commit
|
commitdiff
|
tree
2013-07-16
Diane Trout
Deleting commented out code.
commit
|
commitdiff
|
tree
2013-07-08
Diane Trout
Update test to work with species -> species_name rename.
commit
|
commitdiff
|
tree
2013-07-01
Diane Trout
Initial attempt to start generating trackHubs and manifest...
commit
|
commitdiff
|
tree
2013-07-01
Diane Trout
type checking more detailed than Literal doesn't work...
commit
|
commitdiff
|
tree
2013-06-28
Diane Trout
Add option to copy source files for a submission.
commit
|
commitdiff
|
tree
2013-06-18
Diane Trout
Further improve reliability of make_tree_from.
commit
|
commitdiff
|
tree
2013-06-18
Diane Trout
copy_tree_from wasn't actually making any symlinks.
commit
|
commitdiff
|
tree
2013-06-18
Diane Trout
Update tests for new version of redland rdf lib.
commit
|
commitdiff
|
tree
2013-06-18
Diane Trout
Remove deprecated adminmedia template tag from loader.
commit
|
commitdiff
|
tree
2013-06-18
Diane Trout
Replace deprecated django.contrib adminmedia with staticfiles.
commit
|
commitdiff
|
tree
2013-06-18
Diane Trout
Use proper User model import.
commit
|
commitdiff
|
tree