2 # Used to make sure that we properly report an error when
3 # an annotation is not a file.
7 # name of anaylsis directory and stem for associated files
10 # if APPEND vars true, a _wXX and/or _tYY added to analysis name
11 # where XX = WINDOW and YY = THRESHOLD
12 # Highly recommeded with use of command line override of WINDOW or THRESHOLD
17 SEQUENCE seq/mouse_mck_pro.fa
18 ANNOTATION mm_mck3test.annot
21 # the second sequence info
22 SEQUENCE seq/human_mck_pro.fa
26 # analyses parameters: command line args -w -t will override these