mussa_nway.hh

   1 //                        ----------------------------------------
   2 //                         ----------  mussa_nway.hh  -----------
   3 //                        ----------------------------------------
   4
   5 #include "flp.hh"
   6
   7
   8 class Nway_Paths
   9 {
  10   friend class ConnView;
  11   friend class SeqView;
  12   private:
  13     int species_num;
  14     int threshold;
  15     int win_size;
  16     list<vector<int> > pathz;
  17     list<vector<int> > refined_pathz;
  18
  19
  20   public:
  21     Nway_Paths();
  22     void setup(int sp_num, int w, int t);
  23     void find_paths_r(vector<vector<FLPs> > all_comparisons);
  24     void path_search(vector<vector<FLPs> > all_comparisons, vector<int> path, int depth);
  25     void simple_refine();
  26     void save(string save_file_path);
  27     int load(string load_file_path);
  28     void add_path(vector<int> loaded_path);
  29
  30     void find_paths(vector<vector<FLPs> > all_comparisons);
  31     void refine();
  32
  33     void save_old(string save_file_path);
  34     void print();
  35 };