py/nway_paths.cpp

   1 #include <boost/python.hpp>
   2 namespace py = boost::python;
   3
   4 #include "alg/nway_paths.hpp"
   5
   6 void export_nway_paths()
   7 {
   8   /*py::class_<NwayPaths::ConservedPaths>("ConservedPaths")
   9     .def("__len__", &NwayPaths::ConservedPaths::size, "return length of paths")
  10     .def("__contains__", &std_item<NwayPaths::ConservedPaths>::in)
  11     .def("__iter__", py::iterator<NwayPaths::ConservedPaths>())
  12     .def("clear", &NwayPaths::ConservedPaths::clear, "remove all the paths")
  13     .def("append", &std_item<NwayPaths::ConservedPaths>::add,
  14         py::with_custodian_and_ward<1,2>()) // to let container keep value
  15     .def("__getitem__", &std_item<NwayPaths::ConservedPaths>::get,
  16         py::return_value_policy<py::copy_non_const_reference>())
  17     .def("__setitem__", &std_item<NwayPaths::ConservedPaths>::set,
  18         py::with_custodian_and_ward<1,2>()) // to let container keep value
  19     .def("__delitem__", &std_item<NwayPaths::ConservedPaths>::del)
  20   ;*/
  21
  22    py::class_<NwayPaths>("NwayPaths")
  23     .def("__len__", &NwayPaths::size, "number of paths")
  24     .def("sequence_count", &NwayPaths::sequence_count,
  25          "number of sequences in this analysis")
  26     .def("clear", &NwayPaths::clear, "remove all paths")
  27     .add_property("threshold", &NwayPaths::get_threshold, "Get hard threshold")
  28     .add_property("soft_threshold", &NwayPaths::get_soft_threshold, &NwayPaths::set_soft_threshold)
  29     .add_property("window_size", &NwayPaths::get_window)
  30     .add_property("pathz", py::range(&NwayPaths::pbegin, &NwayPaths::pend))
  31     .def("path_size", &NwayPaths::path_size, "number of nway paths")
  32     .add_property("refinedPathz", py::range(&NwayPaths::rpbegin, &NwayPaths::rpend))
  33     .def("refined_path_size", &NwayPaths::refined_path_size,
  34          "number of paths that match the soft threshold")
  35    ;
  36 }
  37