qui/MussaAlignedWindow.hpp

   1 #ifndef MUSSA_ALIGNED_WINDOW_H
   2 #define MUSSA_ALIGNED_WINDOW_H
   3
   4 #include <set>
   5
   6 #include <QStatusBar>
   7 #include <QWidget>
   8 #include "alg/mussa.hpp"
   9 #include "qui/seqbrowser/SequenceBrowserWidget.hpp"
  10
  11 //! Show sequence alignments
  12 class MussaAlignedWindow : public QWidget
  13 {
  14 public:
  15   //! construct an aligned window for an analysis and selected paths
  16   MussaAlignedWindow(Mussa&, const std::set<int>&, QWidget *parent=0);
  17
  18 public slots:
  19   //! use selected_paths[pathid] to set the starting position of our sequence
  20   void setAlignment(size_t pathid);
  21
  22 protected:
  23   void setSelectedPaths(Mussa &m, const std::set<int>& sel_paths);
  24   void computeMatchLines();
  25
  26   Mussa& analysis;
  27   //std::vector<Sequence> sequences;
  28   //const std::set<int>& selected_paths;
  29   std::vector<ExtendedConservedPath> selected_paths;
  30   SequenceBrowserWidget browser;
  31   QStatusBar status;
  32 };
  33 #endif