qui/mussa_setup_dialog/MussaSetupWidget.cpp

   1 #include <QFrame>
   2 #include <QLabel>
   3 #include <QLineEdit>
   4 #include <QSpinBox>
   5 #include <QVBoxLayout>
   6 #include <QHBoxLayout>
   7 #include <QPushButton>
   8
   9 #include <list>
  10
  11 using namespace std;
  12
  13 //#include "qui/mussa_setup_dialog/SequenceSetupWidget.hpp"
  14 #include "qui/mussa_setup_dialog/SequenceSetupFrame.hpp"
  15 #include "qui/mussa_setup_dialog/MussaSetupWidget.hpp"
  16 #include "qui/mussa_setup_dialog/SetupInfo.hpp"
  17 #include "alg/mussa.hpp"
  18 #include "mussa_exceptions.hpp"
  19
  20 MussaSetupWidget::MussaSetupWidget(QWidget *parent)
  21   : QWidget(parent),
  22     createPushButton(tr("Create")),
  23     cancelPushButton(tr("Cancel")),
  24     seqSetupFrame(0)
  25 {
  26
  27   // Analysis name
  28   QLabel *analysisNameLabel = new QLabel(tr("Analysis Name"));
  29   analysisNameLabel->setBuddy(&analysisNameLineEdit);
  30
  31   // Window
  32   QLabel *windowLabel = new QLabel(tr("Window"));
  33   windowLabel->setBuddy(&windowLineEdit);
  34
  35   // Threshold
  36   QLabel *thresholdLabel = new QLabel(tr("Threshold"));
  37   thresholdLabel->setBuddy(&thresholdLineEdit);
  38
  39   // Number of sequences
  40   QLabel *numOfSequencesLabel = new QLabel(tr("Number of sequences"));
  41   numOfSequencesLabel->setBuddy(&numOfSequencesSpinBox);
  42   numOfSequencesSpinBox.setMinimum(1);
  43
  44   //Sequence setup frame
  45   seqSetupFrame = new SequenceSetupFrame;
  46
  47   connect(&numOfSequencesSpinBox, SIGNAL(valueChanged(int)),
  48           seqSetupFrame, SLOT(changeSequenceCount(int)));
  49
  50   numOfSequencesSpinBox.setValue(2);
  51
  52   // Create Experiment Button
  53   connect(&createPushButton, SIGNAL(pressed()),
  54           this, SLOT(mussaCreatePushed()));
  55
  56   // Cancle Button
  57   connect(&cancelPushButton, SIGNAL(pressed()),
  58           this, SLOT(mussaCancelPushed()));
  59
  60   // LAYOUT
  61   QHBoxLayout *row1Layout = new QHBoxLayout;
  62   QHBoxLayout *row2Layout = new QHBoxLayout;
  63   QVBoxLayout *mainLayout = new QVBoxLayout;
  64   QHBoxLayout *buttonLayout = new QHBoxLayout;
  65
  66   row1Layout->addWidget(analysisNameLabel);
  67   row1Layout->addWidget(&analysisNameLineEdit);
  68
  69   row2Layout->addWidget(windowLabel);
  70   row2Layout->addWidget(&windowLineEdit);
  71   row2Layout->addWidget(thresholdLabel);
  72   row2Layout->addWidget(&thresholdLineEdit);
  73   row2Layout->addWidget(numOfSequencesLabel);
  74   row2Layout->addWidget(&numOfSequencesSpinBox);
  75
  76   buttonLayout->addWidget(&createPushButton);
  77   buttonLayout->addWidget(&cancelPushButton);
  78
  79   mainLayout->addLayout(row1Layout);
  80   mainLayout->addLayout(row2Layout);
  81   mainLayout->addWidget(seqSetupFrame);
  82   mainLayout->addLayout(buttonLayout);
  83   setLayout(mainLayout);
  84
  85 }
  86
  87 void MussaSetupWidget::mussaCreatePushed()
  88 {
  89   emit createButtonPushed();
  90 }
  91
  92 void MussaSetupWidget::mussaCancelPushed()
  93 {
  94   emit cancelButtonPushed();
  95 }
  96
  97 Mussa* MussaSetupWidget::getMussaObject()
  98 {
  99   Mussa *mussa = new Mussa;
 100
 101   std::string seqFile;
 102   std::string annotFile;
 103   int fastaIndex;
 104   int start;
 105   int end;
 106
 107   list<SetupInfo *> setupInfoList = seqSetupFrame->getSetupInfo();
 108
 109   for (list<SetupInfo *>::iterator setup_item = setupInfoList.begin();
 110        setup_item != setupInfoList.end();
 111        ++setup_item)
 112   {
 113     seqFile = (*setup_item)->getSeqFile();
 114     annotFile = (*setup_item)->getAnnotFile();
 115     fastaIndex = (*setup_item)->getFastaIndex();
 116     start = (*setup_item)->getSubSeqStart();
 117     end = (*setup_item)->getSubSeqEnd();
 118
 119     mussa->load_sequence(seqFile, annotFile, fastaIndex, start, end);
 120   }
 121   setupInfoList.clear();
 122
 123   int win_size = windowLineEdit.text().toInt();
 124   int threshold = thresholdLineEdit.text().toInt();
 125   if (win_size == 0 or threshold == 0) {
 126     throw mussa_load_error("must set analysis parameters");
 127   } else {
 128     mussa->analyze(win_size, threshold, Mussa::TransitiveNway, 0.0);
 129   }
 130
 131   return mussa;
 132 }
 133
 134 //MussaSetupWidget::MussaSetupWidget(const MussaSetupWidget& msw)
 135 //  : analysisNameLineEdit(msw.analysisNameLineEdit),
 136 //    windowLineEdit(msw.windowLineEdit),
 137 //    thresholdLineEdit(msw.thresholdLineEdit),
 138 //    numOfSequencesLineEdit(msw.numOfSequencesLineEdit),
 139 //    seqSetupFrame(msw.seqSetupFrame)
 140 //{
 141 //}