qui/mussa_setup_dialog/MussaSetupWidget.cpp

   1 #include <QFrame>
   2 #include <QLabel>
   3 #include <QLineEdit>
   4 #include <QSpinBox>
   5 #include <QVBoxLayout>
   6 #include <QHBoxLayout>
   7 #include <QPushButton>
   8
   9 #include <list>
  10
  11 //#include "qui/mussa_setup_dialog/SequenceSetupWidget.hpp"
  12 #include "qui/mussa_setup_dialog/SequenceSetupFrame.hpp"
  13 #include "qui/mussa_setup_dialog/MussaSetupWidget.hpp"
  14 #include "qui/mussa_setup_dialog/SetupInfo.hpp"
  15 #include "alg/mussa.hpp"
  16
  17 MussaSetupWidget::MussaSetupWidget(QWidget *parent)
  18   : QWidget(parent),
  19     analysisNameLineEdit(0),
  20     windowLineEdit(0),
  21     thresholdLineEdit(0),
  22     numOfSequencesSpinBox(0),
  23     createPushButton(0),
  24     cancelPushButton(0),
  25     seqSetupFrame(0)
  26 {
  27
  28   // Analysis name
  29   analysisNameLineEdit = new QLineEdit;
  30   QLabel *analysisNameLabel = new QLabel(tr("Analysis Name"));
  31   analysisNameLabel->setBuddy(analysisNameLineEdit);
  32
  33   // Window
  34   windowLineEdit = new QLineEdit;
  35   QLabel *windowLabel = new QLabel(tr("Window"));
  36   windowLabel->setBuddy(windowLineEdit);
  37
  38   // Threshold
  39   thresholdLineEdit = new QLineEdit;
  40   QLabel *thresholdLabel = new QLabel(tr("Threshold"));
  41   thresholdLabel->setBuddy(thresholdLineEdit);
  42
  43   // Number of sequences
  44   numOfSequencesSpinBox = new QSpinBox;
  45   QLabel *numOfSequencesLabel = new QLabel(tr("Number of sequences"));
  46   numOfSequencesLabel->setBuddy(numOfSequencesSpinBox);
  47   numOfSequencesSpinBox->setMinimum(1);
  48
  49
  50   //Sequence setup frame
  51   seqSetupFrame = new SequenceSetupFrame;
  52
  53   connect(numOfSequencesSpinBox, SIGNAL(valueChanged(int)),
  54           seqSetupFrame, SLOT(changeSequenceCount(int)));
  55
  56   numOfSequencesSpinBox->setValue(1);
  57
  58   // Create Experiment Button
  59   createPushButton = new QPushButton(tr("Create"));
  60   connect(createPushButton, SIGNAL(pressed()),
  61           this, SLOT(mussaCreatePushed()));
  62
  63   // Cancle Button
  64   cancelPushButton = new QPushButton(tr("Cancel"));
  65   connect(cancelPushButton, SIGNAL(pressed()),
  66           this, SLOT(mussaCancelPushed()));
  67
  68   // LAYOUT
  69   QHBoxLayout *row1Layout = new QHBoxLayout;
  70   QHBoxLayout *row2Layout = new QHBoxLayout;
  71   QVBoxLayout *mainLayout = new QVBoxLayout;
  72   QHBoxLayout *buttonLayout = new QHBoxLayout;
  73
  74   row1Layout->addWidget(analysisNameLabel);
  75   row1Layout->addWidget(analysisNameLineEdit);
  76
  77   row2Layout->addWidget(windowLabel);
  78   row2Layout->addWidget(windowLineEdit);
  79   row2Layout->addWidget(thresholdLabel);
  80   row2Layout->addWidget(thresholdLineEdit);
  81   row2Layout->addWidget(numOfSequencesLabel);
  82   row2Layout->addWidget(numOfSequencesSpinBox);
  83
  84   buttonLayout->addWidget(createPushButton);
  85   buttonLayout->addWidget(cancelPushButton);
  86
  87   mainLayout->addLayout(row1Layout);
  88   mainLayout->addLayout(row2Layout);
  89   mainLayout->addWidget(seqSetupFrame);
  90   mainLayout->addLayout(buttonLayout);
  91   setLayout(mainLayout);
  92
  93 }
  94
  95 void MussaSetupWidget::mussaCreatePushed()
  96 {
  97   emit createButtonPushed();
  98 }
  99
 100 void MussaSetupWidget::mussaCancelPushed()
 101 {
 102   emit cancelButtonPushed();
 103 }
 104
 105 Mussa* MussaSetupWidget::getMussaObject()
 106 {
 107   Mussa *mussa = new Mussa;
 108
 109
 110
 111   std::string seqFile;
 112   std::string annotFile;
 113   int fastaIndex;
 114   int start;
 115   int end;
 116
 117   std::list<SetupInfo *> setupInfoList = seqSetupFrame->getSetupInfo();
 118
 119   const int count = setupInfoList.size();
 120
 121   SetupInfo *setupInfo = 0;
 122   for (int i=0; i < count; i++)
 123   {
 124     setupInfo = setupInfoList.back();
 125     setupInfoList.pop_back();
 126
 127     seqFile = setupInfo->getSeqFile();
 128     annotFile = setupInfo->getAnnotFile();
 129     fastaIndex = setupInfo->getFastaIndex();
 130     start = setupInfo->getSubSeqStart();
 131     end = setupInfo->getSubSeqEnd();
 132
 133     mussa->load_sequence(seqFile, annotFile, fastaIndex, start, end);
 134     delete setupInfo;
 135   }
 136
 137   mussa->analyze(0, 0, Mussa::TransitiveNway, 0.0);
 138
 139   return mussa;
 140 }
 141
 142 //MussaSetupWidget::MussaSetupWidget(const MussaSetupWidget& msw)
 143 //  : analysisNameLineEdit(msw.analysisNameLineEdit),
 144 //    windowLineEdit(msw.windowLineEdit),
 145 //    thresholdLineEdit(msw.thresholdLineEdit),
 146 //    numOfSequencesLineEdit(msw.numOfSequencesLineEdit),
 147 //    seqSetupFrame(msw.seqSetupFrame)
 148 //{
 149 //}