FIND_PACKAGE(OpenGL )
-FIND_PACKAGE(Boost REQUIRED)
+
+set(Boost_USE_STATIC_LIBS OFF)
+set(Boost_USE_MULTITHREADED ON)
+FIND_PACKAGE(Boost 1.34.1 REQUIRED filesystem unit_test_framework
+ serialization system program_options )
+FIND_PACKAGE(Boost 1.3.4.1 COMPONENTS python )
FIND_PACKAGE(Qt4)
INCLUDE( ${QT_USE_FILE} )
+INCLUDE( Platform )
SET(MOC_HEADERS
mussa.hpp
)
QT4_WRAP_CPP(MOC_SOURCES ${MOC_HEADERS})
-SET(SOURCES annotation_colors.cpp
+SET(SOURCES alphabet.cpp
+ annotations.cpp
+ annotation_colors.cpp
color.cpp
conserved_path.cpp
flp.cpp
flp_seqcomp.cpp
glseqbrowser.cpp
glsequence.cpp
+ io.cpp
mussa.cpp
+ motif_parser.cpp
nway_entropy.cpp
nway_other.cpp
nway_paths.cpp
parse_options.cpp
+ seq.cpp
+ seq_span.cpp
sequence.cpp
sequence_location.cpp )
+GET_MUSSA_COMPILE_FLAGS(ALG_CFLAGS)
+GET_MUSSA_LINK_FLAGS(ALG_LDFLAGS)
+SET_SOURCE_FILES_PROPERTIES(
+ ${SOURCES} ${MOC_SOURCES}
+ PROPERTIES
+ COMPILE_FLAGS "${ALG_CFLAGS}"
+)
+
ADD_LIBRARY( mussa_core STATIC ${SOURCES} ${MOC_SOURCES})
INCLUDE_DIRECTORIES(${OPENGL_INCLUDE_DIR}
- ${BOOST_INCLUDE_DIR}
- ${QT_INCLUDES})
-
-TARGET_LINK_LIBRARIES(mussa_core
- ${OPEN_gl_LIBRARY}
- ${QT_LIBRARIES})
-
-# these are really only needed for gcc on AMD64
-SET_SOURCE_FILES_PROPERTIES(${SOURCES} ${MOC_SOURCES}
- PROPERTIES COMPILE_FLAGS "-fPIC")
-SET_TARGET_PROPERTIES(mussa_core PROPERTIES COMPILE_FLAGS "-fPIC")
+ ${Boost_INCLUDE_DIR}
+ ${QT_INCLUDES}
+ ${CMAKE_CURRENT_SOURCE_DIR})
+SET_TARGET_PROPERTIES(
+ mussa_core PROPERTIES
+ COMPILE_FLAGS "${ALG_CFLAGS}"
+ LINK_FLAGS "${ALG_LDFLAGS}"
+)
ADD_SUBDIRECTORY( test )
+ADD_SUBDIRECTORY( tsf )