-SET(SOURCES annotation_colors.cpp
+FIND_PACKAGE(OpenGL )
+
+set(Boost_USE_STATIC_LIBS OFF)
+set(Boost_USE_MULTITHREADED ON)
+FIND_PACKAGE(Boost 1.34.1 REQUIRED filesystem unit_test_framework
+ serialization system program_options )
+FIND_PACKAGE(Boost 1.3.4.1 COMPONENTS python )
+FIND_PACKAGE(Qt4)
+INCLUDE( ${QT_USE_FILE} )
+INCLUDE( Platform )
+
+SET(MOC_HEADERS
+ mussa.hpp
+ nway_paths.hpp
+ )
+QT4_WRAP_CPP(MOC_SOURCES ${MOC_HEADERS})
+
+SET(SOURCES alphabet.cpp
+ annotations.cpp
+ annotation_colors.cpp
color.cpp
conserved_path.cpp
flp.cpp
flp_seqcomp.cpp
glseqbrowser.cpp
glsequence.cpp
+ io.cpp
mussa.cpp
+ motif_parser.cpp
nway_entropy.cpp
nway_other.cpp
nway_paths.cpp
parse_options.cpp
- sequence.cpp)
+ seq.cpp
+ seq_span.cpp
+ sequence.cpp
+ sequence_location.cpp )
+
+GET_MUSSA_COMPILE_FLAGS(ALG_CFLAGS)
+GET_MUSSA_LINK_FLAGS(ALG_LDFLAGS)
+SET_SOURCE_FILES_PROPERTIES(
+ ${SOURCES} ${MOC_SOURCES}
+ PROPERTIES
+ COMPILE_FLAGS "${ALG_CFLAGS}"
+)
-FIND_PACKAGE(OpenGL)
-INCLUDE_DIRECTORIES(${OPENGL_INCLUDE_DIR})
-TARGET_LINK_LIBRARIES(mussa_core ${OPEN_gl_LIBRARY})
+ADD_LIBRARY( mussa_core STATIC ${SOURCES} ${MOC_SOURCES})
+INCLUDE_DIRECTORIES(${OPENGL_INCLUDE_DIR}
+ ${Boost_INCLUDE_DIR}
+ ${QT_INCLUDES}
+ ${CMAKE_CURRENT_SOURCE_DIR})
-ADD_LIBRARY( mussa_core STATIC ${SOURCES} )
+SET_TARGET_PROPERTIES(
+ mussa_core PROPERTIES
+ COMPILE_FLAGS "${ALG_CFLAGS}"
+ LINK_FLAGS "${ALG_LDFLAGS}"
+)
ADD_SUBDIRECTORY( test )
+ADD_SUBDIRECTORY( tsf )