store motifs as sequences instead of strings

[mussa.git] / alg / sequence.cpp

diff --git a/alg/sequence.cpp b/alg/sequence.cpp
index b9163c0c6b17dc103fae39e9487850c08328de49..b8488dcbc70042551362f90655949189897eca2e 100644 (file)
--- a/alg/sequence.cpp
+++ b/alg/sequence.cpp
@@ -778,7 +778,7 @@ Sequence::motif_normalize(std::string a_motif)
   return valid_motif;
 }
 
-void Sequence::add_motif(std::string a_motif)
+void Sequence::add_motif(const Sequence& a_motif)
 {
   std::vector<int> motif_starts = find_motif(a_motif);