massive code move

[mussa.git] / flp.hh

diff --git a/flp.hh b/flp.hh
index 0929bd18b7d41b4f485e5493e0e1dc90c18f8487..a34b51a8a7b3a49fd711906b5a3fd66d851b1b30 100644 (file)
--- a/flp.hh
+++ b/flp.hh
@@ -18,13 +18,16 @@
 #include <string>
 #include <vector>
 
-
-// FLP = Fixed Length Pairs (Data)
-// vector of linked lists of the match type struct
+//! FLP = Fixed Length Pairs (Data)
+/*!
+ * vector of linked lists of the match type struct
+ */
 class FLPs
 {
   private:
+    //! the number of base pairs used to compute this sliding window
     int window_size;
+    //! the minimum tnumber of base pairs need for this window to be saved.
     int hard_threshold;
     int seq1_length, seq2_length, seq1_win_num, seq2_win_num;
     std::string ana_type;