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Update mussa to build on ubuntu 10.04 with qt 4.6.2 +boost 1.40.0.1
[mussa.git] / alg / test /
2010-10-18 Diane TroutUpdate mussa to build on ubuntu 10.04 with qt 4.6.2... master tree | commitdiff
2009-11-24 Diane TroutRemove prototype boost serialiation code. tree | commitdiff
2009-11-10 Diane TroutUpdate mussa build scripts to work with Boost 1.40... tree | commitdiff
2008-02-15 Diane TroutSwitch to a new FindBoost tree | commitdiff
2007-09-04 Diane Troutmore work on seq_span tree | commitdiff
2007-01-05 Diane Trouttest paircomp::NwayComparison tree | commitdiff
2007-06-23 Diane TroutCatch annotation sequences that don't end with newline tree | commitdiff
2007-06-21 Diane Trouttest annotating a sequence with fasta records in a... tree | commitdiff
2007-04-19 Diane Troutimprove mupa comment character parsing tree | commitdiff
2007-04-19 Diane Troutmake mupa file loading eol-style insensitive tree | commitdiff
2007-04-13 Diane Troutset annotation draw function by type tree | commitdiff
2007-04-13 Diane TroutMark real sequence instead of Ns tree | commitdiff
2007-04-11 Diane Troutshow where the Ns are tree | commitdiff
2007-04-09 Diane Troutadd function for marking 'N' regions tree | commitdiff
2007-04-09 Diane Troutadd draw function pointer to drawable tree | commitdiff
2007-04-06 Diane Troutremove annot class in favor of SeqSpan tree | commitdiff
2007-04-06 Diane TroutAdd getdefault to Annotations tree | commitdiff
2007-04-04 Diane Troutfix uninitialized pointer tree | commitdiff
2007-04-03 Diane Troutfix problems with motif changes not showing up in seque... tree | commitdiff
2007-03-30 Diane Troutincorporate drawable and annotations tree | commitdiff
2007-03-30 Diane Troutcreate class to hold drawing information tree | commitdiff
2007-03-30 Diane Troutcreate a metadata holding class tree | commitdiff
2007-03-27 Diane TroutHandle subseq when the parent is on the minus strand tree | commitdiff
2007-03-24 Diane Troutmove strand into seqspan tree | commitdiff
2007-03-21 Diane TroutMissed part of "Store Sequence sequence location in... tree | commitdiff
2007-03-21 Diane TroutMove alphabet type into SeqString tree | commitdiff
2007-03-20 Diane TroutStore Sequence sequence location in a shared_ptr class tree | commitdiff
2007-02-20 Diane Troutmore error messages for loading an annotation. tree | commitdiff
2007-01-04 Diane Troutconditionally build the paircomp tests tree | commitdiff
2007-01-04 Diane Troutpaircomp used the string find_first_not_of tree | commitdiff
2007-01-04 Diane Troutsplit unittests into seperate executables tree | commitdiff
2006-12-14 Diane Troutlen(mussa.paths()) should equal the number of found... tree | commitdiff
2006-10-30 Diane Troutinclude filename in unparsable annotation error message tree | commitdiff
2006-10-30 Diane Troutreport filename for invalid fasta files tree | commitdiff
2006-10-20 Diane Troutadd nl to end of 3 files tree | commitdiff
2006-10-20 Diane Troutcopy motifs to a new subanalysis tree | commitdiff
2006-10-19 Diane Troutfix motif loader under release build tree | commitdiff
2006-10-19 Diane TroutSequence::rev_comp works on subsequences tree | commitdiff
2006-10-18 Diane Troutadd to_upper_case to some sequence unittests tree | commitdiff
2006-10-17 Diane Troutremove old code tree | commitdiff
2006-10-17 Diane Troutdon't link against X11 on OS X tree | commitdiff
2006-10-14 Diane Troutdon't seqcomp sequences that are too small tree | commitdiff
2006-10-14 Diane Troutadd operator< to ConservedPath tree | commitdiff
2006-10-12 Diane Troutdoes createLocalAlignment work for a 3 way? tree | commitdiff
2006-10-11 Diane Troutadd Mussa::save_motif() tree | commitdiff
2006-10-11 Diane Troutthrow errors when spirit parsing fails tree | commitdiff
2006-10-11 Diane Trouta title of path("/my/silly/path") doesn't work on windows tree | commitdiff
2006-10-10 Diane Troutimplement alphabet for sequence tree | commitdiff
2006-10-05 Diane Troutdraw link lines with a width tree | commitdiff
2006-10-04 Diane Troutfixes for Mussa::load_motif tree | commitdiff
2006-10-03 Diane TroutAdd window titles tree | commitdiff
2006-09-19 Diane Troutcatch possible segfault with get_sequence() tree | commitdiff
2006-09-15 Diane Troutkeep track of a subsequences parent tree | commitdiff
2006-09-15 Diane Troutreport our "start/stop" location on a subsequence tree | commitdiff
2006-09-15 Diane Troutmake our Color class serializable tree | commitdiff
2006-09-14 Diane TroutImplement an optional name in the motif parser tree | commitdiff
2006-09-12 Diane Trouttrack where our analysis is saved and if the analysis... tree | commitdiff
2006-09-09 Diane Troutmake really sure load_mupa has a file to parse. tree | commitdiff
2006-09-07 Diane TroutFigured out how to serialize a shared_ptr<string> tree | commitdiff
2006-08-30 Diane Troutuse shared_ptr to store the sequence string tree | commitdiff
2006-08-29 Diane Troutgo back to sequence being its own class tree | commitdiff
2006-08-24 Diane Troutupdate sequence serialization to support the xml archive tree | commitdiff
2006-08-23 Diane TroutAllow changing the name for a sequence in the sequence... tree | commitdiff
2006-08-12 Diane TroutFix merge issues with the win32 library patch tree | commitdiff
2006-08-12 Brandon KingReorder libraries for win32 tree | commitdiff
2006-08-12 Brandon KingTell unittests to use native file convention for EXAMPL... tree | commitdiff
2006-08-10 Diane TroutLet the annotation parser skip html tags tree | commitdiff
2006-08-09 Diane TroutImplement serialize for sequence tree | commitdiff
2006-08-09 Diane Troutstart breaking save out from Mussa::analyze() tree | commitdiff
2006-08-09 Diane Troutadd dirty flag tree | commitdiff
2006-07-28 Diane TroutUse CMAKE_BINARY_DIR instead of the very wrong MUSSA_BI... tree | commitdiff
2006-07-27 Diane Troutadd annot and motif classes to python interface tree | commitdiff
2006-07-21 Diane TroutBuild universal binaries on OS X tree | commitdiff
2006-07-01 Diane Troutmake sure subsequences have a species name tree | commitdiff
2006-07-01 Diane TroutImplement UI for subanalysis mode tree | commitdiff
2006-06-30 Diane Troutstore motifs as sequences instead of strings tree | commitdiff
2006-06-29 Diane Troutset_motifs should erase the previous motifs tree | commitdiff
2006-06-29 Diane Troutupdate the annotation grammer to make species name... tree | commitdiff
2006-06-23 Diane TroutGetting closer to a subanalysis mode tree | commitdiff
2006-06-21 Diane TroutMore progress toward subanalysis tree | commitdiff
2006-06-20 Diane Troutextend annotation names and types to allow punctuation tree | commitdiff
2006-06-17 Diane Troutmake Sequence a subclass of std::string tree | commitdiff
2006-06-10 Diane Troutpartial implementation of sequence track copy tree | commitdiff
2006-06-09 Diane TroutMore robust eol handling for Sequence::load_fasta tree | commitdiff
2006-06-08 Diane Troutimprove fasta parsing tree | commitdiff
2006-06-06 Diane Troutkeep track of how far through a seqcomp we've gotten tree | commitdiff
2006-05-27 Diane Troutadd callback for tracking analysis progress tree | commitdiff
2006-05-27 Diane Troutrename [gset_soft_thres to [gs]et_soft_threshold] tree | commitdiff
2006-05-20 Diane Troutticket:62 fix local alignment tree | commitdiff
2006-05-17 Diane Troutfinish implementing annotation by sequence tree | commitdiff
2006-05-17 Diane Troutswitch to a character based spirit parser tree | commitdiff
2006-05-17 Diane Trouttry to read fasta blocks in the annotation file tree | commitdiff
2006-05-17 Diane Troutuse spirit parser for reading annot file tree | commitdiff
2006-05-16 Diane Troutadd annotations by sequence string tree | commitdiff
2006-04-13 Diane Troutfix ticket:83 throw an error when we don't have a fasta... tree | commitdiff
2006-04-12 Diane Troutticket:85 fix, extend code crashes with 1 path tree | commitdiff
2006-04-11 Diane Troutminor fixes for older buildsystems tree | commitdiff
2006-04-08 Diane Troutrename _LIB to _LIBRARY to be more consistent with... tree | commitdiff
2006-04-07 Diane Troutmake include gl.h multiplatform tree | commitdiff
2006-04-07 Diane Troutswitch to using boost::filesystem tree | commitdiff
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MUSSA multi-species alignment tool