projects
/
pysam.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
Imported Upstream version 0.7
[pysam.git]
/
pysam
/
TabProxies.pxd
diff --git
a/pysam/TabProxies.pxd
b/pysam/TabProxies.pxd
index cf11852644eccc583eb5e735961c3987be1f5652..61a2a5d74c98b0a2bb71e6c2805829e2ac5c0fd1 100644
(file)
--- a/
pysam/TabProxies.pxd
+++ b/
pysam/TabProxies.pxd
@@
-11,7
+11,6
@@
cdef extern from "stdlib.h":
cdef extern from "Python.h":
ctypedef struct FILE
cdef extern from "Python.h":
ctypedef struct FILE
- FILE* PyFile_AsFile(object)
char *fgets(char *str, int size, FILE *ifile)
int feof(FILE *stream)
size_t strlen(char *s)
char *fgets(char *str, int size, FILE *ifile)
int feof(FILE *stream)
size_t strlen(char *s)
@@
-61,19
+60,11
@@
cdef class TupleProxy:
cdef class GTFProxy( TupleProxy) :
cdef:
cdef class GTFProxy( TupleProxy) :
cdef:
- char * contig
- char * source
- char * feature
- uint32_t start
- uint32_t end
- char * score
- char * strand
- char * frame
- char * attributes
+ char * _attributes
cdef bint hasOwnAttributes
cdef int getMaxFields( self, size_t nbytes )
cdef bint hasOwnAttributes
cdef int getMaxFields( self, size_t nbytes )
- cdef
update( self, char * buffer, size_t nbytes
)
+ cdef
char * getAttributes( self
)
cdef class NamedTupleProxy( TupleProxy) :
pass
cdef class NamedTupleProxy( TupleProxy) :
pass