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- return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
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-static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i) {
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- return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
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-
-
-#define __Pyx_GetItemInt(o, i, size, to_py_func) (((size) <= sizeof(Py_ssize_t)) ? \
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- __Pyx_GetItemInt_Generic(o, to_py_func(i)))
-
-static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i) {
- PyObject *r;
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- r = __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
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-static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index);
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-static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);
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-static PyObject *__Pyx_UnpackItem(PyObject *, Py_ssize_t index); /*proto*/
-static int __Pyx_EndUnpack(PyObject *, Py_ssize_t expected); /*proto*/
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-static int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed,
- const char *name, int exact); /*proto*/
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-static CYTHON_INLINE void __Pyx_RaiseNoneIndexingError(void);
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-#if PY_MAJOR_VERSION >= 3
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- value = PyDict_GetItemWithError(d, key);
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- if (!PyErr_Occurred())
- PyErr_SetObject(PyExc_KeyError, key);
- return NULL;
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- Py_INCREF(value);
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- #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key)
-#endif
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-static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); /*proto*/
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-static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value, PyObject **tb); /*proto*/
-static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb); /*proto*/
-
-static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list); /*proto*/
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-static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb); /*proto*/
-static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb); /*proto*/
-
-static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb); /*proto*/
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-static CYTHON_INLINE int32_t __Pyx_PyInt_from_py_int32_t(PyObject *);
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-static CYTHON_INLINE unsigned char __Pyx_PyInt_AsUnsignedChar(PyObject *);
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-static CYTHON_INLINE unsigned short __Pyx_PyInt_AsUnsignedShort(PyObject *);
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-static CYTHON_INLINE unsigned int __Pyx_PyInt_AsUnsignedInt(PyObject *);
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-static CYTHON_INLINE char __Pyx_PyInt_AsChar(PyObject *);
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-static CYTHON_INLINE short __Pyx_PyInt_AsShort(PyObject *);
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-static CYTHON_INLINE int __Pyx_PyInt_AsInt(PyObject *);
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-static CYTHON_INLINE signed char __Pyx_PyInt_AsSignedChar(PyObject *);
-
-static CYTHON_INLINE signed short __Pyx_PyInt_AsSignedShort(PyObject *);
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-static CYTHON_INLINE signed int __Pyx_PyInt_AsSignedInt(PyObject *);
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-static CYTHON_INLINE int __Pyx_PyInt_AsLongDouble(PyObject *);
-
-static CYTHON_INLINE unsigned long __Pyx_PyInt_AsUnsignedLong(PyObject *);
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-static CYTHON_INLINE long __Pyx_PyInt_AsLong(PyObject *);
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-static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, long size, int strict); /*proto*/
-
-static PyObject *__Pyx_ImportModule(const char *name); /*proto*/
-
-static int __Pyx_GetVtable(PyObject *dict, void *vtabptr); /*proto*/
-
-static void __Pyx_AddTraceback(const char *funcname); /*proto*/
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-static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); /*proto*/
-/* Module declarations from cpython.version */
-
-/* Module declarations from cpython.ref */
-
-/* Module declarations from cpython.exc */
-
-/* Module declarations from cpython.module */
-
-/* Module declarations from cpython.mem */
-
-/* Module declarations from cpython.tuple */
-
-/* Module declarations from cpython.list */
-
-/* Module declarations from libc.stdio */
-
-/* Module declarations from cpython.object */
-
-/* Module declarations from cpython.sequence */
-
-/* Module declarations from cpython.mapping */
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-/* Module declarations from cpython.iterator */
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-/* Module declarations from cpython.type */
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-/* Module declarations from cpython.number */
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-/* Module declarations from cpython.int */
-
-/* Module declarations from __builtin__ */
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-/* Module declarations from cpython.bool */
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-static PyTypeObject *__pyx_ptype_7cpython_4bool_bool = 0;
-/* Module declarations from cpython.long */
-
-/* Module declarations from cpython.float */
-
-/* Module declarations from cpython.complex */
-
-/* Module declarations from cpython.string */
-
-/* Module declarations from cpython.unicode */
-
-/* Module declarations from cpython.dict */
-
-/* Module declarations from cpython.instance */
-
-/* Module declarations from cpython.function */
-
-/* Module declarations from cpython.method */
-
-/* Module declarations from cpython.weakref */
-
-/* Module declarations from cpython.getargs */
-
-/* Module declarations from cpython.pythread */
-
-/* Module declarations from cpython.cobject */
-
-/* Module declarations from cpython.oldbuffer */
-
-/* Module declarations from cpython.set */
-
-/* Module declarations from cpython.buffer */
-
-/* Module declarations from cpython.bytes */
-
-/* Module declarations from cpython.pycapsule */
-
-/* Module declarations from cpython */
-
-/* Module declarations from TabProxies */
-
-static PyTypeObject *__pyx_ptype_10TabProxies_TupleProxy = 0;
-static PyTypeObject *__pyx_ptype_10TabProxies_GTFProxy = 0;
-static PyTypeObject *__pyx_ptype_10TabProxies_NamedTupleProxy = 0;
-static PyTypeObject *__pyx_ptype_10TabProxies_BedProxy = 0;
-static PyTypeObject *__pyx_ptype_10TabProxies_VCFProxy = 0;
-/* Module declarations from ctabix */
-
-static PyTypeObject *__pyx_ptype_6ctabix_Tabixfile = 0;
-static PyTypeObject *__pyx_ptype_6ctabix_Parser = 0;
-static PyTypeObject *__pyx_ptype_6ctabix_TabixIterator = 0;
-static PyTypeObject *__pyx_ptype_6ctabix_TabixHeaderIterator = 0;
-static PyTypeObject *__pyx_ptype_6ctabix_asTuple = 0;
-static PyTypeObject *__pyx_ptype_6ctabix_asGTF = 0;
-static PyTypeObject *__pyx_ptype_6ctabix_asBed = 0;
-static PyTypeObject *__pyx_ptype_6ctabix_asVCF = 0;
-static PyTypeObject *__pyx_ptype_6ctabix_TabixIteratorParsed = 0;
-#define __Pyx_MODULE_NAME "ctabix"
-int __pyx_module_is_main_ctabix = 0;
-
-/* Implementation of ctabix */
-static PyObject *__pyx_builtin_IOError;
-static PyObject *__pyx_builtin_ValueError;
-static PyObject *__pyx_builtin_StopIteration;
-static PyObject *__pyx_builtin_OSError;
-static PyObject *__pyx_builtin_ord;
-static PyObject *__pyx_builtin_KeyError;
-static char __pyx_k_1[] = "invalid file opening mode `%s`";
-static char __pyx_k_2[] = ".tbi";
-static char __pyx_k_3[] = "file `%s` not found";
-static char __pyx_k_4[] = "index `%s` not found";
-static char __pyx_k_5[] = "could not open file `%s`";
-static char __pyx_k_6[] = "%s:%i-%i";
-static char __pyx_k_7[] = "invalid region `%s`";
-static char __pyx_k_8[] = "invalid region: start (%i) > end (%i)";
-static char __pyx_k_9[] = "start out of range (%i)";
-static char __pyx_k_10[] = "end out of range (%i)";
-static char __pyx_k_11[] = "I/O operation on closed file";
-static char __pyx_k_12[] = "malformatted query or wrong sequence name.\n";
-static char __pyx_k_13[] = "can't open header.\n";
-static char __pyx_k_15[] = "Filename '%s' already exists, use *force* to overwrite";
-static char __pyx_k_16[] = "could not open '%s' for writing";
-static char __pyx_k_17[] = "could not open '%s' for reading";
-static char __pyx_k_18[] = "writing failed";
-static char __pyx_k_20[] = "#";
-static char __pyx_k_22[] = "No such file '%s'";
-static char __pyx_k_23[] = ".gz";
-static char __pyx_k_24[] = "Filename '%s.tbi' already exists, use *force* to overwrite";
-static char __pyx_k_25[] = "unknown preset '%s', valid presets are '%s'";
-static char __pyx_k_26[] = ",";
-static char __pyx_k_27[] = "chromosome names";
-static char __pyx_k_28[] = "Tabixfile._isOpen (line 19)";
-static char __pyx_k_29[] = "Tabixfile._open (line 23)";
-static char __pyx_k_30[] = "Tabixfile._parseRegion (line 57)";
-static char __pyx_k_31[] = "Tabixfile.fetch (line 102)";
-static char __pyx_k_32[] = "Tabixfile.header.__get__ (line 140)";
-static char __pyx_k_33[] = "TabixIterator.__next__ (line 192)";
-static char __pyx_k_34[] = "TabixHeaderIterator.__next__ (line 239)";
-static char __pyx_k_35[] = "TabixIteratorParsed.__next__ (line 342)";
-static char __pyx_k_36[] = "tabix_compress (line 362)";
-static char __pyx_k_37[] = "tabix_index (line 407)";
-static char __pyx_k__r[] = "r";
-static char __pyx_k__w[] = "w";
-static char __pyx_k__bc[] = "bc";
-static char __pyx_k__ec[] = "ec";
-static char __pyx_k__fp[] = "fp";
-static char __pyx_k__os[] = "os";
-static char __pyx_k__sc[] = "sc";
-static char __pyx_k__bed[] = "bed";
-static char __pyx_k__end[] = "end";
-static char __pyx_k__gff[] = "gff";
-static char __pyx_k__idx[] = "idx";
-static char __pyx_k__len[] = "len";
-static char __pyx_k__ord[] = "ord";
-static char __pyx_k__sam[] = "sam";
-static char __pyx_k__sys[] = "sys";
-static char __pyx_k__tid[] = "tid";
-static char __pyx_k__vcf[] = "vcf";
-static char __pyx_k__copy[] = "copy";
-static char __pyx_k__gzip[] = "gzip";
-static char __pyx_k__join[] = "join";
-static char __pyx_k__keys[] = "keys";
-static char __pyx_k__mode[] = "mode";
-static char __pyx_k__path[] = "path";
-static char __pyx_k___open[] = "_open";
-static char __pyx_k__asBed[] = "asBed";
-static char __pyx_k__asGTF[] = "asGTF";
-static char __pyx_k__asVCF[] = "asVCF";
-static char __pyx_k__close[] = "close";
-static char __pyx_k__fetch[] = "fetch";
-static char __pyx_k__force[] = "force";
-static char __pyx_k__start[] = "start";
-static char __pyx_k__types[] = "types";
-static char __pyx_k__buffer[] = "buffer";
-static char __pyx_k__ctypes[] = "ctypes";
-static char __pyx_k__exists[] = "exists";
-static char __pyx_k__header[] = "header";
-static char __pyx_k__parser[] = "parser";
-static char __pyx_k__pileup[] = "pileup";
-static char __pyx_k__preset[] = "preset";
-static char __pyx_k__psltbl[] = "psltbl";
-static char __pyx_k__region[] = "region";
-static char __pyx_k__struct[] = "struct";
-static char __pyx_k__unlink[] = "unlink";
-static char __pyx_k__IOError[] = "IOError";
-static char __pyx_k__OSError[] = "OSError";
-static char __pyx_k____all__[] = "__all__";
-static char __pyx_k____get__[] = "__get__";
-static char __pyx_k___isOpen[] = "_isOpen";
-static char __pyx_k__asTuple[] = "asTuple";
-static char __pyx_k__end_col[] = "end_col";
-static char __pyx_k__seq_col[] = "seq_col";
-static char __pyx_k__KeyError[] = "KeyError";
-static char __pyx_k__O_RDONLY[] = "O_RDONLY";
-static char __pyx_k____main__[] = "__main__";
-static char __pyx_k____next__[] = "__next__";
-static char __pyx_k____test__[] = "__test__";
-static char __pyx_k__endswith[] = "endswith";
-static char __pyx_k__filename[] = "filename";
-static char __pyx_k__iterator[] = "iterator";
-static char __pyx_k__tempfile[] = "tempfile";
-static char __pyx_k__Tabixfile[] = "Tabixfile";
-static char __pyx_k__itertools[] = "itertools";
-static char __pyx_k__line_skip[] = "line_skip";
-static char __pyx_k__meta_char[] = "meta_char";
-static char __pyx_k__reference[] = "reference";
-static char __pyx_k__start_col[] = "start_col";
-static char __pyx_k__tabixfile[] = "tabixfile";
-static char __pyx_k__zerobased[] = "zerobased";
-static char __pyx_k__ValueError[] = "ValueError";
-static char __pyx_k__filename_in[] = "filename_in";
-static char __pyx_k__tabix_index[] = "tabix_index";
-static char __pyx_k___parseRegion[] = "_parseRegion";
-static char __pyx_k__filename_out[] = "filename_out";
-static char __pyx_k__StopIteration[] = "StopIteration";
-static char __pyx_k__TabixIterator[] = "TabixIterator";
-static char __pyx_k__tabix_compress[] = "tabix_compress";
-static char __pyx_k__TabixHeaderIterator[] = "TabixHeaderIterator";
-static char __pyx_k__TabixIteratorParsed[] = "TabixIteratorParsed";
-static PyObject *__pyx_kp_s_1;
-static PyObject *__pyx_kp_s_10;
-static PyObject *__pyx_kp_s_11;
-static PyObject *__pyx_kp_s_12;
-static PyObject *__pyx_kp_s_13;
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-static PyObject *__pyx_kp_s_16;
-static PyObject *__pyx_kp_s_17;
-static PyObject *__pyx_kp_s_18;
-static PyObject *__pyx_kp_s_2;
-static PyObject *__pyx_kp_s_20;
-static PyObject *__pyx_kp_s_22;
-static PyObject *__pyx_kp_s_23;
-static PyObject *__pyx_kp_s_24;
-static PyObject *__pyx_kp_s_25;
-static PyObject *__pyx_kp_s_26;
-static PyObject *__pyx_kp_u_28;
-static PyObject *__pyx_kp_u_29;
-static PyObject *__pyx_kp_s_3;
-static PyObject *__pyx_kp_u_30;
-static PyObject *__pyx_kp_u_31;
-static PyObject *__pyx_kp_u_32;
-static PyObject *__pyx_kp_u_33;
-static PyObject *__pyx_kp_u_34;
-static PyObject *__pyx_kp_u_35;
-static PyObject *__pyx_kp_u_36;
-static PyObject *__pyx_kp_u_37;
-static PyObject *__pyx_kp_s_4;
-static PyObject *__pyx_kp_s_5;
-static PyObject *__pyx_kp_s_6;
-static PyObject *__pyx_kp_s_7;
-static PyObject *__pyx_kp_s_8;
-static PyObject *__pyx_kp_s_9;
-static PyObject *__pyx_n_s__IOError;
-static PyObject *__pyx_n_s__KeyError;
-static PyObject *__pyx_n_s__OSError;
-static PyObject *__pyx_n_s__O_RDONLY;
-static PyObject *__pyx_n_s__StopIteration;
-static PyObject *__pyx_n_s__TabixHeaderIterator;
-static PyObject *__pyx_n_s__TabixIterator;
-static PyObject *__pyx_n_s__TabixIteratorParsed;
-static PyObject *__pyx_n_s__Tabixfile;
-static PyObject *__pyx_n_s__ValueError;
-static PyObject *__pyx_n_s____all__;
-static PyObject *__pyx_n_s____get__;
-static PyObject *__pyx_n_s____main__;
-static PyObject *__pyx_n_s____next__;
-static PyObject *__pyx_n_s____test__;
-static PyObject *__pyx_n_s___isOpen;
-static PyObject *__pyx_n_s___open;
-static PyObject *__pyx_n_s___parseRegion;
-static PyObject *__pyx_n_s__asBed;
-static PyObject *__pyx_n_s__asGTF;
-static PyObject *__pyx_n_s__asTuple;
-static PyObject *__pyx_n_s__asVCF;
-static PyObject *__pyx_n_s__bc;
-static PyObject *__pyx_n_s__bed;
-static PyObject *__pyx_n_s__buffer;
-static PyObject *__pyx_n_s__close;
-static PyObject *__pyx_n_s__copy;
-static PyObject *__pyx_n_s__ctypes;
-static PyObject *__pyx_n_s__ec;
-static PyObject *__pyx_n_s__end;
-static PyObject *__pyx_n_s__end_col;
-static PyObject *__pyx_n_s__endswith;
-static PyObject *__pyx_n_s__exists;
-static PyObject *__pyx_n_s__fetch;
-static PyObject *__pyx_n_s__filename;
-static PyObject *__pyx_n_s__filename_in;
-static PyObject *__pyx_n_s__filename_out;
-static PyObject *__pyx_n_s__force;
-static PyObject *__pyx_n_s__fp;
-static PyObject *__pyx_n_s__gff;
-static PyObject *__pyx_n_s__gzip;
-static PyObject *__pyx_n_s__header;
-static PyObject *__pyx_n_s__idx;
-static PyObject *__pyx_n_s__iterator;
-static PyObject *__pyx_n_s__itertools;
-static PyObject *__pyx_n_s__join;
-static PyObject *__pyx_n_s__keys;
-static PyObject *__pyx_n_s__len;
-static PyObject *__pyx_n_s__line_skip;
-static PyObject *__pyx_n_s__meta_char;
-static PyObject *__pyx_n_s__mode;
-static PyObject *__pyx_n_s__ord;
-static PyObject *__pyx_n_s__os;
-static PyObject *__pyx_n_s__parser;
-static PyObject *__pyx_n_s__path;
-static PyObject *__pyx_n_s__pileup;
-static PyObject *__pyx_n_s__preset;
-static PyObject *__pyx_n_s__psltbl;
-static PyObject *__pyx_n_s__r;
-static PyObject *__pyx_n_s__reference;
-static PyObject *__pyx_n_s__region;
-static PyObject *__pyx_n_s__sam;
-static PyObject *__pyx_n_s__sc;
-static PyObject *__pyx_n_s__seq_col;
-static PyObject *__pyx_n_s__start;
-static PyObject *__pyx_n_s__start_col;
-static PyObject *__pyx_n_s__struct;
-static PyObject *__pyx_n_s__sys;
-static PyObject *__pyx_n_s__tabix_compress;
-static PyObject *__pyx_n_s__tabix_index;
-static PyObject *__pyx_n_s__tabixfile;
-static PyObject *__pyx_n_s__tempfile;
-static PyObject *__pyx_n_s__tid;
-static PyObject *__pyx_n_s__types;
-static PyObject *__pyx_n_s__unlink;
-static PyObject *__pyx_n_s__vcf;
-static PyObject *__pyx_n_s__w;
-static PyObject *__pyx_n_s__zerobased;
-static PyObject *__pyx_int_0;
-static PyObject *__pyx_int_1;
-static PyObject *__pyx_int_2;
-static PyObject *__pyx_int_3;
-static PyObject *__pyx_int_4;
-static PyObject *__pyx_int_5;
-static PyObject *__pyx_int_neg_1;
-static PyObject *__pyx_int_15;
-static PyObject *__pyx_int_17;
-static PyObject *__pyx_int_18;
-static PyObject *__pyx_int_0x10000;
-static PyObject *__pyx_k_14;
-static PyObject *__pyx_k_19;
-static PyObject *__pyx_k_21;
-
-/* "/ifs/devel/pysam/pysam/pysam/ctabix.pyx":15
- * '''
- *
- * def __cinit__(self, *args, **kwargs ): # <<<<<<<<<<<<<<
- * self.tabixfile = NULL
- * self._open( *args, **kwargs )
- */
-
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- int kw_allowed)
-{
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-{
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- #if PY_MAJOR_VERSION >= 3
- "%s() got multiple values for keyword argument '%U'", func_name, kw_name);
- #else
- "%s() got multiple values for keyword argument '%s'", func_name,
- PyString_AS_STRING(kw_name));
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-}
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-static void __Pyx_RaiseArgtupleInvalid(
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- int exact,
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-{
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-static int __Pyx_ParseOptionalKeywords(
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- Py_ssize_t num_pos_args,
- const char* function_name)
-{
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- if (unlikely(!PyString_CheckExact(key)) && unlikely(!PyString_Check(key))) {
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- #endif
- goto invalid_keyword_type;
- } else {
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- #if PY_MAJOR_VERSION >= 3
- if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) &&
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- if (**name == key) goto arg_passed_twice;
- #if PY_MAJOR_VERSION >= 3
- if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) &&
- PyUnicode_Compare(**name, key) == 0) goto arg_passed_twice;
- #else
- if (PyString_GET_SIZE(**name) == PyString_GET_SIZE(key) &&
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- #endif
- }
- if (kwds2) {
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- } else {
- goto invalid_keyword;
- }
- }
- }
- }
- }
- return 0;
-arg_passed_twice:
- __Pyx_RaiseDoubleKeywordsError(function_name, **name);
- goto bad;
-invalid_keyword_type:
- PyErr_Format(PyExc_TypeError,
- "%s() keywords must be strings", function_name);
- goto bad;
-invalid_keyword:
- PyErr_Format(PyExc_TypeError,
- #if PY_MAJOR_VERSION < 3
- "%s() got an unexpected keyword argument '%s'",
- function_name, PyString_AsString(key));
- #else
- "%s() got an unexpected keyword argument '%U'",
- function_name, key);
- #endif
-bad:
- return -1;
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-
-
-static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) {
- PyErr_Format(PyExc_ValueError,
- #if PY_VERSION_HEX < 0x02050000
- "need more than %d value%s to unpack", (int)index,
- #else
- "need more than %zd value%s to unpack", index,
- #endif
- (index == 1) ? "" : "s");
-}
-
-static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) {
- PyErr_Format(PyExc_ValueError,
- #if PY_VERSION_HEX < 0x02050000
- "too many values to unpack (expected %d)", (int)expected);
- #else
- "too many values to unpack (expected %zd)", expected);
- #endif
-}
-
-static PyObject *__Pyx_UnpackItem(PyObject *iter, Py_ssize_t index) {
- PyObject *item;
- if (!(item = PyIter_Next(iter))) {
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- __Pyx_RaiseNeedMoreValuesError(index);
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- }
- return item;
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-
-static int __Pyx_EndUnpack(PyObject *iter, Py_ssize_t expected) {
- PyObject *item;
- if ((item = PyIter_Next(iter))) {
- Py_DECREF(item);
- __Pyx_RaiseTooManyValuesError(expected);
- return -1;
- }
- else if (!PyErr_Occurred())
- return 0;
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- return -1;
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-
-static int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed,
- const char *name, int exact)
-{
- if (!type) {
- PyErr_Format(PyExc_SystemError, "Missing type object");
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- else if (exact) {
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- }
- else {
- if (PyObject_TypeCheck(obj, type)) return 1;
- }
- PyErr_Format(PyExc_TypeError,
- "Argument '%s' has incorrect type (expected %s, got %s)",
- name, type->tp_name, Py_TYPE(obj)->tp_name);
- return 0;
-}
-
-static CYTHON_INLINE void __Pyx_RaiseNoneIndexingError(void) {
- PyErr_SetString(PyExc_TypeError, "'NoneType' object is unsubscriptable");
-}
-
-static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) {
- PyObject *local_type, *local_value, *local_tb;
- PyObject *tmp_type, *tmp_value, *tmp_tb;
- PyThreadState *tstate = PyThreadState_GET();
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- local_value = tstate->curexc_value;
- local_tb = tstate->curexc_traceback;
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- tstate->curexc_value = 0;
- tstate->curexc_traceback = 0;
- PyErr_NormalizeException(&local_type, &local_value, &local_tb);
- if (unlikely(tstate->curexc_type))
- goto bad;
- #if PY_MAJOR_VERSION >= 3
- if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0))
- goto bad;
- #endif
- *type = local_type;
- *value = local_value;
- *tb = local_tb;
- Py_INCREF(local_type);
- Py_INCREF(local_value);
- Py_INCREF(local_tb);
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- tstate->exc_type = local_type;
- tstate->exc_value = local_value;
- tstate->exc_traceback = local_tb;
- /* Make sure tstate is in a consistent state when we XDECREF
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- Py_XDECREF(tmp_tb);
- return 0;
-bad:
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- Py_XDECREF(local_tb);
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-}
-
-
-static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value, PyObject **tb) {
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-
-static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb) {
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- tstate->exc_value = value;
- tstate->exc_traceback = tb;
- Py_XDECREF(tmp_type);
- Py_XDECREF(tmp_value);
- Py_XDECREF(tmp_tb);
-}
-
-static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list) {
- PyObject *py_import = 0;
- PyObject *empty_list = 0;
- PyObject *module = 0;
- PyObject *global_dict = 0;
- PyObject *empty_dict = 0;
- PyObject *list;
- py_import = __Pyx_GetAttrString(__pyx_b, "__import__");
- if (!py_import)
- goto bad;
- if (from_list)
- list = from_list;
- else {
- empty_list = PyList_New(0);
- if (!empty_list)
- goto bad;
- list = empty_list;
- }
- global_dict = PyModule_GetDict(__pyx_m);
- if (!global_dict)
- goto bad;
- empty_dict = PyDict_New();
- if (!empty_dict)
- goto bad;
- module = PyObject_CallFunctionObjArgs(py_import,
- name, global_dict, empty_dict, list, NULL);
-bad:
- Py_XDECREF(empty_list);
- Py_XDECREF(py_import);
- Py_XDECREF(empty_dict);
- return module;
-}
-
-static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) {
- PyObject *tmp_type, *tmp_value, *tmp_tb;
- PyThreadState *tstate = PyThreadState_GET();
-
- tmp_type = tstate->curexc_type;
- tmp_value = tstate->curexc_value;
- tmp_tb = tstate->curexc_traceback;
- tstate->curexc_type = type;
- tstate->curexc_value = value;
- tstate->curexc_traceback = tb;
- Py_XDECREF(tmp_type);
- Py_XDECREF(tmp_value);
- Py_XDECREF(tmp_tb);
-}
-
-static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) {
- PyThreadState *tstate = PyThreadState_GET();
- *type = tstate->curexc_type;
- *value = tstate->curexc_value;
- *tb = tstate->curexc_traceback;
-
- tstate->curexc_type = 0;
- tstate->curexc_value = 0;
- tstate->curexc_traceback = 0;
-}
-
-
-#if PY_MAJOR_VERSION < 3
-static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb) {
- Py_XINCREF(type);
- Py_XINCREF(value);
- Py_XINCREF(tb);
- /* First, check the traceback argument, replacing None with NULL. */
- if (tb == Py_None) {
- Py_DECREF(tb);
- tb = 0;
- }
- else if (tb != NULL && !PyTraceBack_Check(tb)) {
- PyErr_SetString(PyExc_TypeError,
- "raise: arg 3 must be a traceback or None");
- goto raise_error;
- }
- /* Next, replace a missing value with None */
- if (value == NULL) {
- value = Py_None;
- Py_INCREF(value);
- }
- #if PY_VERSION_HEX < 0x02050000
- if (!PyClass_Check(type))
- #else
- if (!PyType_Check(type))
- #endif
- {
- /* Raising an instance. The value should be a dummy. */
- if (value != Py_None) {
- PyErr_SetString(PyExc_TypeError,
- "instance exception may not have a separate value");
- goto raise_error;
- }
- /* Normalize to raise <class>, <instance> */
- Py_DECREF(value);
- value = type;
- #if PY_VERSION_HEX < 0x02050000
- if (PyInstance_Check(type)) {
- type = (PyObject*) ((PyInstanceObject*)type)->in_class;
- Py_INCREF(type);
- }
- else {
- type = 0;
- PyErr_SetString(PyExc_TypeError,
- "raise: exception must be an old-style class or instance");
- goto raise_error;
- }
- #else
- type = (PyObject*) Py_TYPE(type);
- Py_INCREF(type);
- if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) {
- PyErr_SetString(PyExc_TypeError,
- "raise: exception class must be a subclass of BaseException");
- goto raise_error;
- }
- #endif
- }
-
- __Pyx_ErrRestore(type, value, tb);
- return;
-raise_error:
- Py_XDECREF(value);
- Py_XDECREF(type);
- Py_XDECREF(tb);
- return;
-}
-
-#else /* Python 3+ */
-
-static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb) {
- if (tb == Py_None) {
- tb = 0;
- } else if (tb && !PyTraceBack_Check(tb)) {
- PyErr_SetString(PyExc_TypeError,
- "raise: arg 3 must be a traceback or None");
- goto bad;
- }
- if (value == Py_None)
- value = 0;
-
- if (PyExceptionInstance_Check(type)) {
- if (value) {
- PyErr_SetString(PyExc_TypeError,
- "instance exception may not have a separate value");
- goto bad;
- }
- value = type;
- type = (PyObject*) Py_TYPE(value);
- } else if (!PyExceptionClass_Check(type)) {
- PyErr_SetString(PyExc_TypeError,
- "raise: exception class must be a subclass of BaseException");
- goto bad;
- }
-
- PyErr_SetObject(type, value);
-
- if (tb) {
- PyThreadState *tstate = PyThreadState_GET();
- PyObject* tmp_tb = tstate->curexc_traceback;
- if (tb != tmp_tb) {
- Py_INCREF(tb);
- tstate->curexc_traceback = tb;
- Py_XDECREF(tmp_tb);
- }
- }
-
-bad:
- return;
-}
-#endif
-
-static CYTHON_INLINE int32_t __Pyx_PyInt_from_py_int32_t(PyObject* x) {
- const int32_t neg_one = (int32_t)-1, const_zero = (int32_t)0;
- const int is_unsigned = const_zero < neg_one;
- if (sizeof(int32_t) == sizeof(char)) {
- if (is_unsigned)
- return (int32_t)__Pyx_PyInt_AsUnsignedChar(x);
- else
- return (int32_t)__Pyx_PyInt_AsSignedChar(x);
- } else if (sizeof(int32_t) == sizeof(short)) {
- if (is_unsigned)
- return (int32_t)__Pyx_PyInt_AsUnsignedShort(x);
- else
- return (int32_t)__Pyx_PyInt_AsSignedShort(x);
- } else if (sizeof(int32_t) == sizeof(int)) {
- if (is_unsigned)
- return (int32_t)__Pyx_PyInt_AsUnsignedInt(x);
- else
- return (int32_t)__Pyx_PyInt_AsSignedInt(x);
- } else if (sizeof(int32_t) == sizeof(long)) {
- if (is_unsigned)
- return (int32_t)__Pyx_PyInt_AsUnsignedLong(x);
- else
- return (int32_t)__Pyx_PyInt_AsSignedLong(x);
- } else if (sizeof(int32_t) == sizeof(PY_LONG_LONG)) {
- if (is_unsigned)
- return (int32_t)__Pyx_PyInt_AsUnsignedLongLong(x);
- else
- return (int32_t)__Pyx_PyInt_AsSignedLongLong(x);
- } else {
- int32_t val;
- PyObject *v = __Pyx_PyNumber_Int(x);
- #if PY_VERSION_HEX < 0x03000000
- if (likely(v) && !PyLong_Check(v)) {
- PyObject *tmp = v;
- v = PyNumber_Long(tmp);
- Py_DECREF(tmp);
- }
- #endif
- if (likely(v)) {
- int one = 1; int is_little = (int)*(unsigned char *)&one;
- unsigned char *bytes = (unsigned char *)&val;
- int ret = _PyLong_AsByteArray((PyLongObject *)v,
- bytes, sizeof(val),
- is_little, !is_unsigned);
- Py_DECREF(v);
- if (likely(!ret))
- return val;
- }
- return (int32_t)-1;
- }
-}
-
-static CYTHON_INLINE unsigned char __Pyx_PyInt_AsUnsignedChar(PyObject* x) {
- const unsigned char neg_one = (unsigned char)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(unsigned char) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(unsigned char)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to unsigned char" :
- "value too large to convert to unsigned char");
- }
- return (unsigned char)-1;
- }
- return (unsigned char)val;
- }
- return (unsigned char)__Pyx_PyInt_AsUnsignedLong(x);
-}
-
-static CYTHON_INLINE unsigned short __Pyx_PyInt_AsUnsignedShort(PyObject* x) {
- const unsigned short neg_one = (unsigned short)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(unsigned short) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(unsigned short)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to unsigned short" :
- "value too large to convert to unsigned short");
- }
- return (unsigned short)-1;
- }
- return (unsigned short)val;
- }
- return (unsigned short)__Pyx_PyInt_AsUnsignedLong(x);
-}
-
-static CYTHON_INLINE unsigned int __Pyx_PyInt_AsUnsignedInt(PyObject* x) {
- const unsigned int neg_one = (unsigned int)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(unsigned int) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(unsigned int)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to unsigned int" :
- "value too large to convert to unsigned int");
- }
- return (unsigned int)-1;
- }
- return (unsigned int)val;
- }
- return (unsigned int)__Pyx_PyInt_AsUnsignedLong(x);
-}
-
-static CYTHON_INLINE char __Pyx_PyInt_AsChar(PyObject* x) {
- const char neg_one = (char)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(char) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(char)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to char" :
- "value too large to convert to char");
- }
- return (char)-1;
- }
- return (char)val;
- }
- return (char)__Pyx_PyInt_AsLong(x);
-}
-
-static CYTHON_INLINE short __Pyx_PyInt_AsShort(PyObject* x) {
- const short neg_one = (short)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(short) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(short)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to short" :
- "value too large to convert to short");
- }
- return (short)-1;
- }
- return (short)val;
- }
- return (short)__Pyx_PyInt_AsLong(x);
-}
-
-static CYTHON_INLINE int __Pyx_PyInt_AsInt(PyObject* x) {
- const int neg_one = (int)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(int) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(int)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to int" :
- "value too large to convert to int");
- }
- return (int)-1;
- }
- return (int)val;
- }
- return (int)__Pyx_PyInt_AsLong(x);
-}
-
-static CYTHON_INLINE signed char __Pyx_PyInt_AsSignedChar(PyObject* x) {
- const signed char neg_one = (signed char)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(signed char) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(signed char)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to signed char" :
- "value too large to convert to signed char");
- }
- return (signed char)-1;
- }
- return (signed char)val;
- }
- return (signed char)__Pyx_PyInt_AsSignedLong(x);
-}
-
-static CYTHON_INLINE signed short __Pyx_PyInt_AsSignedShort(PyObject* x) {
- const signed short neg_one = (signed short)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(signed short) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(signed short)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to signed short" :
- "value too large to convert to signed short");
- }
- return (signed short)-1;
- }
- return (signed short)val;
- }
- return (signed short)__Pyx_PyInt_AsSignedLong(x);
-}
-
-static CYTHON_INLINE signed int __Pyx_PyInt_AsSignedInt(PyObject* x) {
- const signed int neg_one = (signed int)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(signed int) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(signed int)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to signed int" :
- "value too large to convert to signed int");
- }
- return (signed int)-1;
- }
- return (signed int)val;
- }
- return (signed int)__Pyx_PyInt_AsSignedLong(x);
-}
-
-static CYTHON_INLINE int __Pyx_PyInt_AsLongDouble(PyObject* x) {
- const int neg_one = (int)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (sizeof(int) < sizeof(long)) {
- long val = __Pyx_PyInt_AsLong(x);
- if (unlikely(val != (long)(int)val)) {
- if (!unlikely(val == -1 && PyErr_Occurred())) {
- PyErr_SetString(PyExc_OverflowError,
- (is_unsigned && unlikely(val < 0)) ?
- "can't convert negative value to int" :
- "value too large to convert to int");
- }
- return (int)-1;
- }
- return (int)val;
- }
- return (int)__Pyx_PyInt_AsLong(x);
-}
-
-static CYTHON_INLINE unsigned long __Pyx_PyInt_AsUnsignedLong(PyObject* x) {
- const unsigned long neg_one = (unsigned long)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
-#if PY_VERSION_HEX < 0x03000000
- if (likely(PyInt_Check(x))) {
- long val = PyInt_AS_LONG(x);
- if (is_unsigned && unlikely(val < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to unsigned long");
- return (unsigned long)-1;
- }
- return (unsigned long)val;
- } else
-#endif
- if (likely(PyLong_Check(x))) {
- if (is_unsigned) {
- if (unlikely(Py_SIZE(x) < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to unsigned long");
- return (unsigned long)-1;
- }
- return PyLong_AsUnsignedLong(x);
- } else {
- return PyLong_AsLong(x);
- }
- } else {
- unsigned long val;
- PyObject *tmp = __Pyx_PyNumber_Int(x);
- if (!tmp) return (unsigned long)-1;
- val = __Pyx_PyInt_AsUnsignedLong(tmp);
- Py_DECREF(tmp);
- return val;
- }
-}
-
-static CYTHON_INLINE unsigned PY_LONG_LONG __Pyx_PyInt_AsUnsignedLongLong(PyObject* x) {
- const unsigned PY_LONG_LONG neg_one = (unsigned PY_LONG_LONG)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
-#if PY_VERSION_HEX < 0x03000000
- if (likely(PyInt_Check(x))) {
- long val = PyInt_AS_LONG(x);
- if (is_unsigned && unlikely(val < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to unsigned PY_LONG_LONG");
- return (unsigned PY_LONG_LONG)-1;
- }
- return (unsigned PY_LONG_LONG)val;
- } else
-#endif
- if (likely(PyLong_Check(x))) {
- if (is_unsigned) {
- if (unlikely(Py_SIZE(x) < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to unsigned PY_LONG_LONG");
- return (unsigned PY_LONG_LONG)-1;
- }
- return PyLong_AsUnsignedLongLong(x);
- } else {
- return PyLong_AsLongLong(x);
- }
- } else {
- unsigned PY_LONG_LONG val;
- PyObject *tmp = __Pyx_PyNumber_Int(x);
- if (!tmp) return (unsigned PY_LONG_LONG)-1;
- val = __Pyx_PyInt_AsUnsignedLongLong(tmp);
- Py_DECREF(tmp);
- return val;
- }
-}
-
-static CYTHON_INLINE long __Pyx_PyInt_AsLong(PyObject* x) {
- const long neg_one = (long)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
-#if PY_VERSION_HEX < 0x03000000
- if (likely(PyInt_Check(x))) {
- long val = PyInt_AS_LONG(x);
- if (is_unsigned && unlikely(val < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to long");
- return (long)-1;
- }
- return (long)val;
- } else
-#endif
- if (likely(PyLong_Check(x))) {
- if (is_unsigned) {
- if (unlikely(Py_SIZE(x) < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to long");
- return (long)-1;
- }
- return PyLong_AsUnsignedLong(x);
- } else {
- return PyLong_AsLong(x);
- }
- } else {
- long val;
- PyObject *tmp = __Pyx_PyNumber_Int(x);
- if (!tmp) return (long)-1;
- val = __Pyx_PyInt_AsLong(tmp);
- Py_DECREF(tmp);
- return val;
- }
-}
-
-static CYTHON_INLINE PY_LONG_LONG __Pyx_PyInt_AsLongLong(PyObject* x) {
- const PY_LONG_LONG neg_one = (PY_LONG_LONG)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
-#if PY_VERSION_HEX < 0x03000000
- if (likely(PyInt_Check(x))) {
- long val = PyInt_AS_LONG(x);
- if (is_unsigned && unlikely(val < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to PY_LONG_LONG");
- return (PY_LONG_LONG)-1;
- }
- return (PY_LONG_LONG)val;
- } else
-#endif
- if (likely(PyLong_Check(x))) {
- if (is_unsigned) {
- if (unlikely(Py_SIZE(x) < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to PY_LONG_LONG");
- return (PY_LONG_LONG)-1;
- }
- return PyLong_AsUnsignedLongLong(x);
- } else {
- return PyLong_AsLongLong(x);
- }
- } else {
- PY_LONG_LONG val;
- PyObject *tmp = __Pyx_PyNumber_Int(x);
- if (!tmp) return (PY_LONG_LONG)-1;
- val = __Pyx_PyInt_AsLongLong(tmp);
- Py_DECREF(tmp);
- return val;
- }
-}
-
-static CYTHON_INLINE signed long __Pyx_PyInt_AsSignedLong(PyObject* x) {
- const signed long neg_one = (signed long)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
-#if PY_VERSION_HEX < 0x03000000
- if (likely(PyInt_Check(x))) {
- long val = PyInt_AS_LONG(x);
- if (is_unsigned && unlikely(val < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to signed long");
- return (signed long)-1;
- }
- return (signed long)val;
- } else
-#endif
- if (likely(PyLong_Check(x))) {
- if (is_unsigned) {
- if (unlikely(Py_SIZE(x) < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to signed long");
- return (signed long)-1;
- }
- return PyLong_AsUnsignedLong(x);
- } else {
- return PyLong_AsLong(x);
- }
- } else {
- signed long val;
- PyObject *tmp = __Pyx_PyNumber_Int(x);
- if (!tmp) return (signed long)-1;
- val = __Pyx_PyInt_AsSignedLong(tmp);
- Py_DECREF(tmp);
- return val;
- }
-}
-
-static CYTHON_INLINE signed PY_LONG_LONG __Pyx_PyInt_AsSignedLongLong(PyObject* x) {
- const signed PY_LONG_LONG neg_one = (signed PY_LONG_LONG)-1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
-#if PY_VERSION_HEX < 0x03000000
- if (likely(PyInt_Check(x))) {
- long val = PyInt_AS_LONG(x);
- if (is_unsigned && unlikely(val < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to signed PY_LONG_LONG");
- return (signed PY_LONG_LONG)-1;
- }
- return (signed PY_LONG_LONG)val;
- } else
-#endif
- if (likely(PyLong_Check(x))) {
- if (is_unsigned) {
- if (unlikely(Py_SIZE(x) < 0)) {
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to signed PY_LONG_LONG");
- return (signed PY_LONG_LONG)-1;
- }
- return PyLong_AsUnsignedLongLong(x);
- } else {
- return PyLong_AsLongLong(x);
- }
- } else {
- signed PY_LONG_LONG val;
- PyObject *tmp = __Pyx_PyNumber_Int(x);
- if (!tmp) return (signed PY_LONG_LONG)-1;
- val = __Pyx_PyInt_AsSignedLongLong(tmp);
- Py_DECREF(tmp);
- return val;
- }
-}
-
-#ifndef __PYX_HAVE_RT_ImportType
-#define __PYX_HAVE_RT_ImportType
-static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name,
- long size, int strict)
-{
- PyObject *py_module = 0;
- PyObject *result = 0;
- PyObject *py_name = 0;
- char warning[200];
-
- py_module = __Pyx_ImportModule(module_name);
- if (!py_module)
- goto bad;
- #if PY_MAJOR_VERSION < 3
- py_name = PyString_FromString(class_name);
- #else
- py_name = PyUnicode_FromString(class_name);
- #endif
- if (!py_name)
- goto bad;
- result = PyObject_GetAttr(py_module, py_name);
- Py_DECREF(py_name);
- py_name = 0;
- Py_DECREF(py_module);
- py_module = 0;
- if (!result)
- goto bad;
- if (!PyType_Check(result)) {
- PyErr_Format(PyExc_TypeError,
- "%s.%s is not a type object",
- module_name, class_name);
- goto bad;
- }
- if (!strict && ((PyTypeObject *)result)->tp_basicsize > size) {
- PyOS_snprintf(warning, sizeof(warning),
- "%s.%s size changed, may indicate binary incompatibility",
- module_name, class_name);
- #if PY_VERSION_HEX < 0x02050000
- PyErr_Warn(NULL, warning);
- #else
- PyErr_WarnEx(NULL, warning, 0);
- #endif
- }
- else if (((PyTypeObject *)result)->tp_basicsize != size) {
- PyErr_Format(PyExc_ValueError,
- "%s.%s has the wrong size, try recompiling",
- module_name, class_name);
- goto bad;
- }
- return (PyTypeObject *)result;
-bad:
- Py_XDECREF(py_module);
- Py_XDECREF(result);
- return 0;
-}
-#endif
-
-#ifndef __PYX_HAVE_RT_ImportModule
-#define __PYX_HAVE_RT_ImportModule
-static PyObject *__Pyx_ImportModule(const char *name) {
- PyObject *py_name = 0;
- PyObject *py_module = 0;
-
- #if PY_MAJOR_VERSION < 3
- py_name = PyString_FromString(name);
- #else
- py_name = PyUnicode_FromString(name);
- #endif
- if (!py_name)
- goto bad;
- py_module = PyImport_Import(py_name);
- Py_DECREF(py_name);
- return py_module;
-bad:
- Py_XDECREF(py_name);
- return 0;
-}
-#endif
-
-static int __Pyx_GetVtable(PyObject *dict, void *vtabptr) {
- PyObject *ob = PyMapping_GetItemString(dict, (char *)"__pyx_vtable__");
- if (!ob)
- goto bad;
-#if PY_VERSION_HEX >= 0x02070000 && !(PY_MAJOR_VERSION==3&&PY_MINOR_VERSION==0)
- *(void **)vtabptr = PyCapsule_GetPointer(ob, 0);
-#else
- *(void **)vtabptr = PyCObject_AsVoidPtr(ob);
-#endif
- if (!*(void **)vtabptr)
- goto bad;
- Py_DECREF(ob);
- return 0;
-bad:
- Py_XDECREF(ob);
- return -1;
-}
-
-#include "compile.h"
-#include "frameobject.h"
-#include "traceback.h"
-
-static void __Pyx_AddTraceback(const char *funcname) {
- PyObject *py_srcfile = 0;
- PyObject *py_funcname = 0;
- PyObject *py_globals = 0;
- PyCodeObject *py_code = 0;
- PyFrameObject *py_frame = 0;
-
- #if PY_MAJOR_VERSION < 3
- py_srcfile = PyString_FromString(__pyx_filename);
- #else
- py_srcfile = PyUnicode_FromString(__pyx_filename);
- #endif
- if (!py_srcfile) goto bad;
- if (__pyx_clineno) {
- #if PY_MAJOR_VERSION < 3
- py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, __pyx_clineno);
- #else
- py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, __pyx_clineno);
- #endif
- }
- else {
- #if PY_MAJOR_VERSION < 3
- py_funcname = PyString_FromString(funcname);
- #else
- py_funcname = PyUnicode_FromString(funcname);
- #endif
- }
- if (!py_funcname) goto bad;
- py_globals = PyModule_GetDict(__pyx_m);
- if (!py_globals) goto bad;
- py_code = PyCode_New(
- 0, /*int argcount,*/
- #if PY_MAJOR_VERSION >= 3
- 0, /*int kwonlyargcount,*/
- #endif
- 0, /*int nlocals,*/
- 0, /*int stacksize,*/
- 0, /*int flags,*/
- __pyx_empty_bytes, /*PyObject *code,*/
- __pyx_empty_tuple, /*PyObject *consts,*/
- __pyx_empty_tuple, /*PyObject *names,*/
- __pyx_empty_tuple, /*PyObject *varnames,*/
- __pyx_empty_tuple, /*PyObject *freevars,*/
- __pyx_empty_tuple, /*PyObject *cellvars,*/
- py_srcfile, /*PyObject *filename,*/
- py_funcname, /*PyObject *name,*/
- __pyx_lineno, /*int firstlineno,*/
- __pyx_empty_bytes /*PyObject *lnotab*/
- );
- if (!py_code) goto bad;
- py_frame = PyFrame_New(
- PyThreadState_GET(), /*PyThreadState *tstate,*/
- py_code, /*PyCodeObject *code,*/
- py_globals, /*PyObject *globals,*/
- 0 /*PyObject *locals*/
- );
- if (!py_frame) goto bad;
- py_frame->f_lineno = __pyx_lineno;
- PyTraceBack_Here(py_frame);
-bad:
- Py_XDECREF(py_srcfile);
- Py_XDECREF(py_funcname);
- Py_XDECREF(py_code);
- Py_XDECREF(py_frame);
-}
-
-static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) {
- while (t->p) {
- #if PY_MAJOR_VERSION < 3
- if (t->is_unicode) {
- *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL);
- } else if (t->intern) {
- *t->p = PyString_InternFromString(t->s);
- } else {
- *t->p = PyString_FromStringAndSize(t->s, t->n - 1);
- }
- #else /* Python 3+ has unicode identifiers */
- if (t->is_unicode | t->is_str) {
- if (t->intern) {
- *t->p = PyUnicode_InternFromString(t->s);
- } else if (t->encoding) {
- *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL);
- } else {
- *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1);
- }
- } else {
- *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1);
- }
- #endif
- if (!*t->p)
- return -1;
- ++t;
- }
- return 0;
-}
-
-/* Type Conversion Functions */
-
-static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) {
- int is_true = x == Py_True;
- if (is_true | (x == Py_False) | (x == Py_None)) return is_true;
- else return PyObject_IsTrue(x);
-}
-
-static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) {
- PyNumberMethods *m;
- const char *name = NULL;
- PyObject *res = NULL;
-#if PY_VERSION_HEX < 0x03000000
- if (PyInt_Check(x) || PyLong_Check(x))
-#else
- if (PyLong_Check(x))
-#endif
- return Py_INCREF(x), x;
- m = Py_TYPE(x)->tp_as_number;
-#if PY_VERSION_HEX < 0x03000000
- if (m && m->nb_int) {
- name = "int";
- res = PyNumber_Int(x);
- }
- else if (m && m->nb_long) {
- name = "long";
- res = PyNumber_Long(x);
- }
-#else
- if (m && m->nb_int) {
- name = "int";
- res = PyNumber_Long(x);
- }
-#endif
- if (res) {
-#if PY_VERSION_HEX < 0x03000000
- if (!PyInt_Check(res) && !PyLong_Check(res)) {
-#else
- if (!PyLong_Check(res)) {
-#endif
- PyErr_Format(PyExc_TypeError,
- "__%s__ returned non-%s (type %.200s)",
- name, name, Py_TYPE(res)->tp_name);
- Py_DECREF(res);
- return NULL;
- }
- }
- else if (!PyErr_Occurred()) {
- PyErr_SetString(PyExc_TypeError,
- "an integer is required");
- }
- return res;
-}
-
-static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
- Py_ssize_t ival;
- PyObject* x = PyNumber_Index(b);
- if (!x) return -1;
- ival = PyInt_AsSsize_t(x);
- Py_DECREF(x);
- return ival;
-}
-
-static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
-#if PY_VERSION_HEX < 0x02050000
- if (ival <= LONG_MAX)
- return PyInt_FromLong((long)ival);
- else {
- unsigned char *bytes = (unsigned char *) &ival;
- int one = 1; int little = (int)*(unsigned char*)&one;
- return _PyLong_FromByteArray(bytes, sizeof(size_t), little, 0);
- }
-#else
- return PyInt_FromSize_t(ival);
-#endif
-}
-
-static CYTHON_INLINE size_t __Pyx_PyInt_AsSize_t(PyObject* x) {
- unsigned PY_LONG_LONG val = __Pyx_PyInt_AsUnsignedLongLong(x);
- if (unlikely(val == (unsigned PY_LONG_LONG)-1 && PyErr_Occurred())) {
- return (size_t)-1;
- } else if (unlikely(val != (unsigned PY_LONG_LONG)(size_t)val)) {
- PyErr_SetString(PyExc_OverflowError,
- "value too large to convert to size_t");
- return (size_t)-1;
- }
- return (size_t)val;
-}
-
-
-#endif /* Py_PYTHON_H */
projects / pysam.git / blobdiff