1 samtools (0.1.18-2ubuntu2) quantal; urgency=low
3 * Change install location of bam.h
5 -- Diane Trout <diane@caltech.edu> Thu, 26 Jan 2012 16:00:48 -0800
7 samtools (0.1.18-2ubuntu1) oneiric; urgency=low
9 * build oneiric version
11 -- Diane Trout <diane@caltech.edu> Mon, 24 Oct 2011 16:50:37 -0700
13 samtools (0.1.18-2) UNRELEASED; urgency=low
15 * Work in progress, see git commits.
17 -- Charles Plessy <plessy@debian.org> Thu, 15 Sep 2011 13:26:37 +0900
19 samtools (0.1.18-1) unstable; urgency=low
21 [b990d9d3] New upstream release.
22 [d59366b9] Updated copyright statements.
23 [aa08abe5] Compress binary packages with xz.
24 [9a36c994] Added a DEP 3 header to debian/patches/no-pileup-tests.patch.
26 -- Charles Plessy <plessy@debian.org> Tue, 06 Sep 2011 16:52:04 +0900
28 samtools (0.1.17-1) unstable; urgency=low
30 * New upstream release 0.1.17 (6 July, 2011).
31 * bcftools.1 and samtools.1 merged (debian/rules, debian/samtools.manpages).
32 * Patched the example makefile to not use samtools pileup, deprecated.
33 (debian/control, debian/rules, debian/patches/series,
34 debian/patches/no-pileup-tests.patch)
36 -- Charles Plessy <plessy@debian.org> Mon, 11 Jul 2011 21:04:30 +0900
38 samtools (0.1.16-1) unstable; urgency=low
40 * New upstream release, implementing SAM Spec v1.4.
41 * Distribute sam.h and the other headers in /usr/include/samtools.
42 Closes: #625622, #626044, LP: #690997.
44 -- Charles Plessy <plessy@debian.org> Thu, 19 May 2011 13:24:25 +0900
46 samtools (0.1.15-1) unstable; urgency=low
48 * New upstream release.
49 * Incremented Standards-Version to reflect conformance with Policy 3.9.2
50 (debian/control, no changes needed).
51 * debian/watch directly interrogates and downloads froms SourceForge.
53 -- Charles Plessy <plessy@debian.org> Tue, 12 Apr 2011 19:44:41 +0900
55 samtools (0.1.14-1) unstable; urgency=low
57 * New upstream release.
59 -- Charles Plessy <plessy@debian.org> Tue, 29 Mar 2011 13:13:54 +0900
61 samtools (0.1.13-1) unstable; urgency=low
63 * New upstream release:
64 - backward incompatible with VCF/BCF generated by samtools older
65 than r921 inclusive (0.1.12a is r862);
66 - buildable with with ld --as-needed (Closes: #606004);
67 - the helper tool bcf-fix.pl was removed.
68 * Install the manual page of bcftools (debian/rules,
69 debian/samtools.manpages). Closes: #616025.
71 -- Charles Plessy <plessy@debian.org> Wed, 02 Mar 2011 13:54:34 +0900
73 samtools (0.1.12a-1) unstable; urgency=low
75 * New upstream release.
76 * Use bzip2 compression for the binary packages (debian/rules).
77 * Incremented debhelper compatibility level to 8, in case ‘--‘ is not
78 available in earlier versions (debian/compat, debian/control).
80 -- Charles Plessy <plessy@debian.org> Fri, 03 Dec 2010 13:32:21 +0900
82 samtools (0.1.10-1) unstable; urgency=low
84 * New upstream release.
86 -- Charles Plessy <plessy@debian.org> Wed, 17 Nov 2010 20:32:40 +0900
88 samtools (0.1.9-1) unstable; urgency=low
90 * New upstream release, and new program: bcftools.
91 * debian/rules, debian/samtools.install: install bcftools, its manpage,
92 and bcf-fix.pl and vcfutils.pl.
93 * debian/samtools.examples, debian/rules: install and clean new examples.
94 * Incremented Standards-Version to reflect conformance with Policy 3.9.1
95 (debian/control, no changes needed).
96 * Updated and reformatted debian/copyright according to latest DEP-5 draft.
98 -- Charles Plessy <plessy@debian.org> Mon, 01 Nov 2010 20:06:32 +0900
100 samtools (0.1.8-1) unstable; urgency=low
102 * New upstream release.
103 * Updated the VCS fields to the current Git repository (debian/control).
104 * Install python scripts in usr/share/samtools, and suggest python
105 (debian/samtools.install, debian/rules, debian/control).
106 * Incremented Standards-Version to reflect conformance with Policy 3.9.0
107 (debian/control, no changes needed).
108 * Added notes on how the package is tested (debian/README.Debian).
110 -- Charles Plessy <plessy@debian.org> Wed, 14 Jul 2010 14:08:59 +0900
112 samtools (0.1.7a~dfsg-1) unstable; urgency=low
114 * New upstream release: new script sam2vcf.pl, and many other changes.
115 * Package converted to the format ‘3.0 (quilt)’ (debian/source/format).
116 * Wrote a manual page for razip (debian/razip.1).
117 * Better clean the example directory to make the source package
118 buildable twice in a row (debian/rules).
120 -- Charles Plessy <plessy@debian.org> Tue, 17 Nov 2009 21:38:24 +0900
122 samtools (0.1.6~dfsg-1) unstable; urgency=low
124 * New upstream release.
125 * Upstream sources repackaged to remove the win32 directory:
126 - The removal was done with git-import-orig in a parallel Git repository,
127 and the corresponding debian/gbp.conf file was added to this package.
128 - Mangled the ~dfsg string of the Debian version in debian/watch.
129 - Added a debian/README.source file and explanations in debian/copyright.
131 -- Charles Plessy <plessy@debian.org> Mon, 14 Sep 2009 21:58:36 +0900
133 samtools (0.1.5c-2) unstable; urgency=low
135 * Rebuilt with -fPIC (debian/rules, README.Debian).
136 * Small corrections to the description from upstream (debian/changelog).
137 * Incremented Standards-Version to reflect conformance with Policy 3.8.3
140 -- Charles Plessy <plessy@debian.org> Thu, 03 Sep 2009 19:29:40 +0900
142 samtools (0.1.5c-1) unstable; urgency=low
144 * Initial release (Closes: #540453)
146 -- Charles Plessy <plessy@debian.org> Sun, 16 Aug 2009 14:38:20 +0900