1 samtools (0.1.18-2) UNRELEASED; urgency=low
3 * Work in progress, see git commits.
5 -- Charles Plessy <plessy@debian.org> Thu, 15 Sep 2011 13:26:37 +0900
7 samtools (0.1.18-1) unstable; urgency=low
9 [b990d9d3] New upstream release.
10 [d59366b9] Updated copyright statements.
11 [aa08abe5] Compress binary packages with xz.
12 [9a36c994] Added a DEP 3 header to debian/patches/no-pileup-tests.patch.
14 -- Charles Plessy <plessy@debian.org> Tue, 06 Sep 2011 16:52:04 +0900
16 samtools (0.1.17-1) unstable; urgency=low
18 * New upstream release 0.1.17 (6 July, 2011).
19 * bcftools.1 and samtools.1 merged (debian/rules, debian/samtools.manpages).
20 * Patched the example makefile to not use samtools pileup, deprecated.
21 (debian/control, debian/rules, debian/patches/series,
22 debian/patches/no-pileup-tests.patch)
24 -- Charles Plessy <plessy@debian.org> Mon, 11 Jul 2011 21:04:30 +0900
26 samtools (0.1.16-1) unstable; urgency=low
28 * New upstream release, implementing SAM Spec v1.4.
29 * Distribute sam.h and the other headers in /usr/include/samtools.
30 Closes: #625622, #626044, LP: #690997.
32 -- Charles Plessy <plessy@debian.org> Thu, 19 May 2011 13:24:25 +0900
34 samtools (0.1.15-1) unstable; urgency=low
36 * New upstream release.
37 * Incremented Standards-Version to reflect conformance with Policy 3.9.2
38 (debian/control, no changes needed).
39 * debian/watch directly interrogates and downloads froms SourceForge.
41 -- Charles Plessy <plessy@debian.org> Tue, 12 Apr 2011 19:44:41 +0900
43 samtools (0.1.14-1) unstable; urgency=low
45 * New upstream release.
47 -- Charles Plessy <plessy@debian.org> Tue, 29 Mar 2011 13:13:54 +0900
49 samtools (0.1.13-1) unstable; urgency=low
51 * New upstream release:
52 - backward incompatible with VCF/BCF generated by samtools older
53 than r921 inclusive (0.1.12a is r862);
54 - buildable with with ld --as-needed (Closes: #606004);
55 - the helper tool bcf-fix.pl was removed.
56 * Install the manual page of bcftools (debian/rules,
57 debian/samtools.manpages). Closes: #616025.
59 -- Charles Plessy <plessy@debian.org> Wed, 02 Mar 2011 13:54:34 +0900
61 samtools (0.1.12a-1) unstable; urgency=low
63 * New upstream release.
64 * Use bzip2 compression for the binary packages (debian/rules).
65 * Incremented debhelper compatibility level to 8, in case ‘--‘ is not
66 available in earlier versions (debian/compat, debian/control).
68 -- Charles Plessy <plessy@debian.org> Fri, 03 Dec 2010 13:32:21 +0900
70 samtools (0.1.10-1) unstable; urgency=low
72 * New upstream release.
74 -- Charles Plessy <plessy@debian.org> Wed, 17 Nov 2010 20:32:40 +0900
76 samtools (0.1.9-1) unstable; urgency=low
78 * New upstream release, and new program: bcftools.
79 * debian/rules, debian/samtools.install: install bcftools, its manpage,
80 and bcf-fix.pl and vcfutils.pl.
81 * debian/samtools.examples, debian/rules: install and clean new examples.
82 * Incremented Standards-Version to reflect conformance with Policy 3.9.1
83 (debian/control, no changes needed).
84 * Updated and reformatted debian/copyright according to latest DEP-5 draft.
86 -- Charles Plessy <plessy@debian.org> Mon, 01 Nov 2010 20:06:32 +0900
88 samtools (0.1.8-1) unstable; urgency=low
90 * New upstream release.
91 * Updated the VCS fields to the current Git repository (debian/control).
92 * Install python scripts in usr/share/samtools, and suggest python
93 (debian/samtools.install, debian/rules, debian/control).
94 * Incremented Standards-Version to reflect conformance with Policy 3.9.0
95 (debian/control, no changes needed).
96 * Added notes on how the package is tested (debian/README.Debian).
98 -- Charles Plessy <plessy@debian.org> Wed, 14 Jul 2010 14:08:59 +0900
100 samtools (0.1.7a~dfsg-1) unstable; urgency=low
102 * New upstream release: new script sam2vcf.pl, and many other changes.
103 * Package converted to the format ‘3.0 (quilt)’ (debian/source/format).
104 * Wrote a manual page for razip (debian/razip.1).
105 * Better clean the example directory to make the source package
106 buildable twice in a row (debian/rules).
108 -- Charles Plessy <plessy@debian.org> Tue, 17 Nov 2009 21:38:24 +0900
110 samtools (0.1.6~dfsg-1) unstable; urgency=low
112 * New upstream release.
113 * Upstream sources repackaged to remove the win32 directory:
114 - The removal was done with git-import-orig in a parallel Git repository,
115 and the corresponding debian/gbp.conf file was added to this package.
116 - Mangled the ~dfsg string of the Debian version in debian/watch.
117 - Added a debian/README.source file and explanations in debian/copyright.
119 -- Charles Plessy <plessy@debian.org> Mon, 14 Sep 2009 21:58:36 +0900
121 samtools (0.1.5c-2) unstable; urgency=low
123 * Rebuilt with -fPIC (debian/rules, README.Debian).
124 * Small corrections to the description from upstream (debian/changelog).
125 * Incremented Standards-Version to reflect conformance with Policy 3.8.3
128 -- Charles Plessy <plessy@debian.org> Thu, 03 Sep 2009 19:29:40 +0900
130 samtools (0.1.5c-1) unstable; urgency=low
132 * Initial release (Closes: #540453)
134 -- Charles Plessy <plessy@debian.org> Sun, 16 Aug 2009 14:38:20 +0900