1 samtools (0.1.18-2ubuntu1~lucid) lucid; urgency=low
3 * Make a branch for woldlab-lucid
5 -- Diane Trout <diane@caltech.edu> Mon, 24 Oct 2011 14:58:35 -0700
7 samtools (0.1.18-2) UNRELEASED; urgency=low
9 * Work in progress, see git commits.
11 -- Charles Plessy <plessy@debian.org> Thu, 15 Sep 2011 13:26:37 +0900
13 samtools (0.1.18-1) unstable; urgency=low
15 [b990d9d3] New upstream release.
16 [d59366b9] Updated copyright statements.
17 [aa08abe5] Compress binary packages with xz.
18 [9a36c994] Added a DEP 3 header to debian/patches/no-pileup-tests.patch.
20 -- Charles Plessy <plessy@debian.org> Tue, 06 Sep 2011 16:52:04 +0900
22 samtools (0.1.17-1) unstable; urgency=low
24 * New upstream release 0.1.17 (6 July, 2011).
25 * bcftools.1 and samtools.1 merged (debian/rules, debian/samtools.manpages).
26 * Patched the example makefile to not use samtools pileup, deprecated.
27 (debian/control, debian/rules, debian/patches/series,
28 debian/patches/no-pileup-tests.patch)
30 -- Charles Plessy <plessy@debian.org> Mon, 11 Jul 2011 21:04:30 +0900
32 samtools (0.1.16-1) unstable; urgency=low
34 * New upstream release, implementing SAM Spec v1.4.
35 * Distribute sam.h and the other headers in /usr/include/samtools.
36 Closes: #625622, #626044, LP: #690997.
38 -- Charles Plessy <plessy@debian.org> Thu, 19 May 2011 13:24:25 +0900
40 samtools (0.1.15-1) unstable; urgency=low
42 * New upstream release.
43 * Incremented Standards-Version to reflect conformance with Policy 3.9.2
44 (debian/control, no changes needed).
45 * debian/watch directly interrogates and downloads froms SourceForge.
47 -- Charles Plessy <plessy@debian.org> Tue, 12 Apr 2011 19:44:41 +0900
49 samtools (0.1.14-1) unstable; urgency=low
51 * New upstream release.
53 -- Charles Plessy <plessy@debian.org> Tue, 29 Mar 2011 13:13:54 +0900
55 samtools (0.1.13-1) unstable; urgency=low
57 * New upstream release:
58 - backward incompatible with VCF/BCF generated by samtools older
59 than r921 inclusive (0.1.12a is r862);
60 - buildable with with ld --as-needed (Closes: #606004);
61 - the helper tool bcf-fix.pl was removed.
62 * Install the manual page of bcftools (debian/rules,
63 debian/samtools.manpages). Closes: #616025.
65 -- Charles Plessy <plessy@debian.org> Wed, 02 Mar 2011 13:54:34 +0900
67 samtools (0.1.12a-1) unstable; urgency=low
69 * New upstream release.
70 * Use bzip2 compression for the binary packages (debian/rules).
71 * Incremented debhelper compatibility level to 8, in case ‘--‘ is not
72 available in earlier versions (debian/compat, debian/control).
74 -- Charles Plessy <plessy@debian.org> Fri, 03 Dec 2010 13:32:21 +0900
76 samtools (0.1.10-1) unstable; urgency=low
78 * New upstream release.
80 -- Charles Plessy <plessy@debian.org> Wed, 17 Nov 2010 20:32:40 +0900
82 samtools (0.1.9-1) unstable; urgency=low
84 * New upstream release, and new program: bcftools.
85 * debian/rules, debian/samtools.install: install bcftools, its manpage,
86 and bcf-fix.pl and vcfutils.pl.
87 * debian/samtools.examples, debian/rules: install and clean new examples.
88 * Incremented Standards-Version to reflect conformance with Policy 3.9.1
89 (debian/control, no changes needed).
90 * Updated and reformatted debian/copyright according to latest DEP-5 draft.
92 -- Charles Plessy <plessy@debian.org> Mon, 01 Nov 2010 20:06:32 +0900
94 samtools (0.1.8-1) unstable; urgency=low
96 * New upstream release.
97 * Updated the VCS fields to the current Git repository (debian/control).
98 * Install python scripts in usr/share/samtools, and suggest python
99 (debian/samtools.install, debian/rules, debian/control).
100 * Incremented Standards-Version to reflect conformance with Policy 3.9.0
101 (debian/control, no changes needed).
102 * Added notes on how the package is tested (debian/README.Debian).
104 -- Charles Plessy <plessy@debian.org> Wed, 14 Jul 2010 14:08:59 +0900
106 samtools (0.1.7a~dfsg-1) unstable; urgency=low
108 * New upstream release: new script sam2vcf.pl, and many other changes.
109 * Package converted to the format ‘3.0 (quilt)’ (debian/source/format).
110 * Wrote a manual page for razip (debian/razip.1).
111 * Better clean the example directory to make the source package
112 buildable twice in a row (debian/rules).
114 -- Charles Plessy <plessy@debian.org> Tue, 17 Nov 2009 21:38:24 +0900
116 samtools (0.1.6~dfsg-1) unstable; urgency=low
118 * New upstream release.
119 * Upstream sources repackaged to remove the win32 directory:
120 - The removal was done with git-import-orig in a parallel Git repository,
121 and the corresponding debian/gbp.conf file was added to this package.
122 - Mangled the ~dfsg string of the Debian version in debian/watch.
123 - Added a debian/README.source file and explanations in debian/copyright.
125 -- Charles Plessy <plessy@debian.org> Mon, 14 Sep 2009 21:58:36 +0900
127 samtools (0.1.5c-2) unstable; urgency=low
129 * Rebuilt with -fPIC (debian/rules, README.Debian).
130 * Small corrections to the description from upstream (debian/changelog).
131 * Incremented Standards-Version to reflect conformance with Policy 3.8.3
134 -- Charles Plessy <plessy@debian.org> Thu, 03 Sep 2009 19:29:40 +0900
136 samtools (0.1.5c-1) unstable; urgency=low
138 * Initial release (Closes: #540453)
140 -- Charles Plessy <plessy@debian.org> Sun, 16 Aug 2009 14:38:20 +0900