1 samtools (0.1.18-1) UNRELEASED; urgency=low
3 * New upstream release.
5 -- Charles Plessy <plessy@debian.org> Tue, 06 Sep 2011 15:54:07 +0900
7 samtools (0.1.17-1) unstable; urgency=low
9 * New upstream release 0.1.17 (6 July, 2011).
10 * bcftools.1 and samtools.1 merged (debian/rules, debian/samtools.manpages).
11 * Patched the example makefile to not use samtools pileup, deprecated.
12 (debian/control, debian/rules, debian/patches/series,
13 debian/patches/no-pileup-tests.patch)
15 -- Charles Plessy <plessy@debian.org> Mon, 11 Jul 2011 21:04:30 +0900
17 samtools (0.1.16-1) unstable; urgency=low
19 * New upstream release, implementing SAM Spec v1.4.
20 * Distribute sam.h and the other headers in /usr/include/samtools.
21 Closes: #625622, #626044, LP: #690997.
23 -- Charles Plessy <plessy@debian.org> Thu, 19 May 2011 13:24:25 +0900
25 samtools (0.1.15-1) unstable; urgency=low
27 * New upstream release.
28 * Incremented Standards-Version to reflect conformance with Policy 3.9.2
29 (debian/control, no changes needed).
30 * debian/watch directly interrogates and downloads froms SourceForge.
32 -- Charles Plessy <plessy@debian.org> Tue, 12 Apr 2011 19:44:41 +0900
34 samtools (0.1.14-1) unstable; urgency=low
36 * New upstream release.
38 -- Charles Plessy <plessy@debian.org> Tue, 29 Mar 2011 13:13:54 +0900
40 samtools (0.1.13-1) unstable; urgency=low
42 * New upstream release:
43 - backward incompatible with VCF/BCF generated by samtools older
44 than r921 inclusive (0.1.12a is r862);
45 - buildable with with ld --as-needed (Closes: #606004);
46 - the helper tool bcf-fix.pl was removed.
47 * Install the manual page of bcftools (debian/rules,
48 debian/samtools.manpages). Closes: #616025.
50 -- Charles Plessy <plessy@debian.org> Wed, 02 Mar 2011 13:54:34 +0900
52 samtools (0.1.12a-1) unstable; urgency=low
54 * New upstream release.
55 * Use bzip2 compression for the binary packages (debian/rules).
56 * Incremented debhelper compatibility level to 8, in case ‘--‘ is not
57 available in earlier versions (debian/compat, debian/control).
59 -- Charles Plessy <plessy@debian.org> Fri, 03 Dec 2010 13:32:21 +0900
61 samtools (0.1.10-1) unstable; urgency=low
63 * New upstream release.
65 -- Charles Plessy <plessy@debian.org> Wed, 17 Nov 2010 20:32:40 +0900
67 samtools (0.1.9-1) unstable; urgency=low
69 * New upstream release, and new program: bcftools.
70 * debian/rules, debian/samtools.install: install bcftools, its manpage,
71 and bcf-fix.pl and vcfutils.pl.
72 * debian/samtools.examples, debian/rules: install and clean new examples.
73 * Incremented Standards-Version to reflect conformance with Policy 3.9.1
74 (debian/control, no changes needed).
75 * Updated and reformatted debian/copyright according to latest DEP-5 draft.
77 -- Charles Plessy <plessy@debian.org> Mon, 01 Nov 2010 20:06:32 +0900
79 samtools (0.1.8-1) unstable; urgency=low
81 * New upstream release.
82 * Updated the VCS fields to the current Git repository (debian/control).
83 * Install python scripts in usr/share/samtools, and suggest python
84 (debian/samtools.install, debian/rules, debian/control).
85 * Incremented Standards-Version to reflect conformance with Policy 3.9.0
86 (debian/control, no changes needed).
87 * Added notes on how the package is tested (debian/README.Debian).
89 -- Charles Plessy <plessy@debian.org> Wed, 14 Jul 2010 14:08:59 +0900
91 samtools (0.1.7a~dfsg-1) unstable; urgency=low
93 * New upstream release: new script sam2vcf.pl, and many other changes.
94 * Package converted to the format ‘3.0 (quilt)’ (debian/source/format).
95 * Wrote a manual page for razip (debian/razip.1).
96 * Better clean the example directory to make the source package
97 buildable twice in a row (debian/rules).
99 -- Charles Plessy <plessy@debian.org> Tue, 17 Nov 2009 21:38:24 +0900
101 samtools (0.1.6~dfsg-1) unstable; urgency=low
103 * New upstream release.
104 * Upstream sources repackaged to remove the win32 directory:
105 - The removal was done with git-import-orig in a parallel Git repository,
106 and the corresponding debian/gbp.conf file was added to this package.
107 - Mangled the ~dfsg string of the Debian version in debian/watch.
108 - Added a debian/README.source file and explanations in debian/copyright.
110 -- Charles Plessy <plessy@debian.org> Mon, 14 Sep 2009 21:58:36 +0900
112 samtools (0.1.5c-2) unstable; urgency=low
114 * Rebuilt with -fPIC (debian/rules, README.Debian).
115 * Small corrections to the description from upstream (debian/changelog).
116 * Incremented Standards-Version to reflect conformance with Policy 3.8.3
119 -- Charles Plessy <plessy@debian.org> Thu, 03 Sep 2009 19:29:40 +0900
121 samtools (0.1.5c-1) unstable; urgency=low
123 * Initial release (Closes: #540453)
125 -- Charles Plessy <plessy@debian.org> Sun, 16 Aug 2009 14:38:20 +0900