8 #define TI_PRESET_GENERIC 0
9 #define TI_PRESET_SAM 1
10 #define TI_PRESET_VCF 2
12 #define TI_FLAG_UCSC 0x10000
14 typedef int (*ti_fetch_f)(int l, const char *s, void *data);
17 typedef struct __ti_index_t ti_index_t;
22 int32_t meta_char, line_skip;
25 extern ti_conf_t ti_conf_gff, ti_conf_bed, ti_conf_psltbl, ti_conf_vcf, ti_conf_sam;
31 int ti_readline(BGZF *fp, kstring_t *str);
33 int ti_index_build(const char *fn, const ti_conf_t *conf);
34 ti_index_t *ti_index_load(const char *fn);
35 void ti_index_destroy(ti_index_t *idx);
36 int ti_parse_region(ti_index_t *idx, const char *str, int *tid, int *begin, int *end);
37 int ti_fetch(BGZF *fp, const ti_index_t *idx, int tid, int beg, int end, void *data, ti_fetch_f func);