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Update mussa to build on ubuntu 10.04 with qt 4.6.2 +boost 1.40.0.1
[mussa.git]
/
alg
/
sequence.hpp
2009-11-24
Diane Trout
Remove prototype boost serialiation code.
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2009-11-10
Diane Trout
Update mussa build scripts to work with Boost 1.40...
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2007-06-21
Diane Trout
test annotating a sequence with fasta records in a...
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2007-04-18
Brandon King
Load N sequences in Mussa::load
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2007-04-11
Diane Trout
show where the Ns are
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2007-04-09
Diane Trout
add function for marking 'N' regions
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2007-04-06
Diane Trout
remove annot class in favor of SeqSpan
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2007-04-03
Diane Trout
fix problems with motif changes not showing up in seque...
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2007-03-30
Diane Trout
incorporate drawable and annotations
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2007-03-24
Diane Trout
move strand into seqspan
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2007-03-21
Diane Trout
Move alphabet type into SeqString
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2007-03-20
Diane Trout
Store Sequence sequence location in a shared_ptr class
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2007-01-04
Diane Trout
paircomp used the string find_first_not_of
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2006-10-19
Diane Trout
Sequence::rev_comp works on subsequences
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2006-10-11
Diane Trout
throw errors when spirit parsing fails
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2006-10-10
Diane Trout
implement alphabet for sequence
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2006-09-15
Diane Trout
keep track of a subsequences parent
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2006-09-15
Diane Trout
report our "start/stop" location on a subsequence
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2006-09-15
Diane Trout
use an enum instead of a bool for strandedness
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2006-09-12
Diane Trout
add seq_forward
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2006-09-07
Diane Trout
remove commented out string conversion
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2006-09-07
Diane Trout
Figured out how to serialize a shared_ptr<string>
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2006-09-07
Diane Trout
go back to using const char * in seqcomp
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2006-08-30
Diane Trout
use shared_ptr to store the sequence string
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2006-08-29
Diane Trout
put basepair alphabets into the Sequence class
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2006-08-29
Diane Trout
go back to sequence being its own class
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2006-08-24
Diane Trout
update sequence serialization to support the xml archive
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2006-08-22
Diane Trout
catch the other spurious class decoration
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2006-08-22
Diane Trout
remove unnecessary class member decoration
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2006-08-10
Diane Trout
Let the annotation parser skip html tags
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2006-08-09
Diane Trout
Implement serialize for sequence
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2006-07-27
Diane Trout
add annot and motif classes to python interface
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2006-07-01
Diane Trout
Implement UI for subanalysis mode
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2006-06-30
Diane Trout
fix boost::python sequence interface
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2006-06-30
Diane Trout
store motifs as sequences instead of strings
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2006-06-29
Diane Trout
allow specifying a name for a sequence
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2006-06-21
Diane Trout
More progress toward subanalysis
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2006-06-17
Diane Trout
make Sequence a subclass of std::string
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2006-06-16
Diane Trout
ticket:104 fix some pointer problems with MussaAlignedW...
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2006-06-10
Diane Trout
partial implementation of sequence track copy
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2006-06-09
Diane Trout
More robust eol handling for Sequence::load_fasta
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2006-06-08
Diane Trout
improve fasta parsing
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2006-05-18
Diane Trout
expose more of the sequence class to python
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2006-05-17
Diane Trout
try to read fasta blocks in the annotation file
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2006-05-17
Diane Trout
use spirit parser for reading annot file
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2006-05-16
Diane Trout
add annotations by sequence string
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2006-04-07
Diane Trout
switch to using boost::filesystem
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2006-03-23
Diane Trout
better sidebar rendering
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2006-03-19
Diane Trout
draw alignment lines
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2006-03-15
Diane Trout
make the path view independent of type of connection
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2006-03-14
Diane Trout
load and display a motif list
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2006-03-14
Diane Trout
attach motifs to a sequence object
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2006-03-12
Diane Trout
There can be only one (filename convention)
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