load and display a motif list
authorDiane Trout <diane@caltech.edu>
Tue, 14 Mar 2006 07:57:20 +0000 (07:57 +0000)
committerDiane Trout <diane@caltech.edu>
Tue, 14 Mar 2006 07:57:20 +0000 (07:57 +0000)
commitff8d018ab5570a5744e2704a90d48acf3349c501
tree1d2d35c6c6ef86492c52ee85041518eceea923d4
parent8c90fc48379a0dad5bc86993d6e8d159e5f196b7
load and display a motif list
Mussagl can now load a motif list from a text file in the form
AAGGGCCTT 1.0 0.5 0.0
(The trailing numbers are the red, green, blue channels)
and motifs are properly displayed on the sequence tracks.

I did this by attaching an AnnotationColors color mapper to the mussa
analysis and passing it to the glsequence class for rendering.
19 files changed:
alg/annotation_colors.cpp
alg/annotation_colors.hpp
alg/glsequence.cpp
alg/glsequence.hpp
alg/mussa.cpp
alg/mussa.hpp
alg/sequence.cpp
alg/sequence.hpp
alg/test/test_annotation_color.cpp
alg/test/test_glsequence.cpp
alg/test/test_mussa.cpp
alg/test/test_sequence.cpp
examples/test_motif.txt [new file with mode: 0644]
mussa_exceptions.hpp
py/glsequence.cpp
qui/PathScene.cpp
qui/PathScene.hpp
qui/PathWindow.cpp
qui/PathWindow.hpp