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add knowledge about file links
[htsworkflow.git] / htsworkflow / submission /
2015-10-20 Diane Troutadd knowledge about file links tree | commitdiff
2015-10-20 Diane Troutupdates to deal with encoded 33 path changes tree | commitdiff
2015-10-20 Diane TroutMerge branch 'django1.7' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2015-10-20 Diane Troutmove run_aws_cp command out of class to make it easier... tree | commitdiff
2015-09-24 Diane TroutReturn read_length for file properties tree | commitdiff
2015-09-23 Diane TroutUse a re.split so we can accept both ', ' and ',' betwe... tree | commitdiff
2015-07-20 Diane Troutpython3 byte vs str compatibility for constructing... tree | commitdiff
2015-04-06 Diane Troutconvert several not covered by unit-test modules to... tree | commitdiff
2015-04-06 Diane TroutBe more careful looking up keys when the fastqname... tree | commitdiff
2015-03-31 Diane Troutadd post_spreadsheet to create encoded objects from... tree | commitdiff
2015-03-31 Diane Troutalso validate documents before creating them tree | commitdiff
2015-03-31 Diane Troutactually complain if we get the wrong type tree | commitdiff
2015-03-31 Diane Troutadd a docstring to validate tree | commitdiff
2015-03-31 Diane TroutAdd get_accession_name to use collection name to find... tree | commitdiff
2015-03-31 Diane Troutsupport trying to figure out object type based on what... tree | commitdiff
2015-03-27 Diane TroutMerge branch 'django1.7' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2015-03-27 Diane TroutSwitch encode3 submitter to use aws. tree | commitdiff
2015-03-27 Diane TroutImport flowcell details into the triple store from... tree | commitdiff
2015-03-27 Diane Troutstore flowcell name in the triple store if its known tree | commitdiff
2015-03-27 Diane Troutrecord file size information for a file in the triple... tree | commitdiff
2015-03-27 Diane Troutgetitem should only return the key tree | commitdiff
2015-03-20 Diane TroutDrop library id encoding tree | commitdiff
2015-03-20 Diane TroutUse regex to make sure scripts end with the right command tree | commitdiff
2015-03-20 Diane Troutuse relative import for submission_test_common tree | commitdiff
2015-03-20 Diane Troutreplace xrange with enumerate tree | commitdiff
2015-03-20 Diane Troutadapt to python2 returning lists and python3 iterators tree | commitdiff
2015-03-20 Diane TroutUse isinstance(object, (types)) pattern instead of... tree | commitdiff
2015-03-20 Diane TroutSpecify text vs binary mode for opening files. tree | commitdiff
2015-03-19 Diane TroutUse django.utils.encode smart_text or smart_str for... tree | commitdiff
2015-02-02 Diane Trouttake advantage of absolute_import to simplify import... tree | commitdiff
2015-01-29 Diane Troutuse six.moves to work around urllib / urllib2 / urlpars... tree | commitdiff
2015-01-29 Diane Troutremove some commented out code tree | commitdiff
2015-01-29 Diane Troutmore use six.moves to import StringIO tree | commitdiff
2015-01-29 Diane TroutConvert old style except blocks to except Exception... tree | commitdiff
2015-01-28 Diane Troutmake the search tool more flexible tree | commitdiff
2015-01-13 Diane TroutDon't pass null authentication information to ENCODED. tree | commitdiff
2015-01-13 Diane Troutuse absolute_import and print_function tree | commitdiff
2015-01-10 Diane Troutget_schema_url only works on object types now, so chang... tree | commitdiff
2015-01-10 Diane Troutat some point I added code that used base64, hashlib... tree | commitdiff
2014-12-13 Diane TroutMerge branch 'django1.7' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2014-12-13 Diane TroutAdd document registration class. tree | commitdiff
2014-12-13 Diane Troutadd more type checking for parsing object type from... tree | commitdiff
2014-12-13 Diane Troutadd some helpful log messages tree | commitdiff
2014-11-07 Diane TroutAdd some code to help read metadata out of spreadsheets. tree | commitdiff
2014-09-12 Diane Troutmake it easier to override variables in ENCODED class tree | commitdiff
2014-07-24 Diane TroutDCC example code sets both content-type and accept... tree | commitdiff
2014-07-24 Diane Troutpep8 whitespace cleanup. tree | commitdiff
2014-06-19 Diane TroutChange unittest2 back into unittest. tree | commitdiff
2014-06-10 Diane TroutAdd post_json as some DCC objects are created with... tree | commitdiff
2014-06-10 Diane TroutRename headers to json_headers for requests (seemed... tree | commitdiff
2014-06-10 Diane TroutUpdates to jsonld context for the DCC schemas. tree | commitdiff
2014-06-10 Diane TroutUpdate test_encoded test cases due to https now being... tree | commitdiff
2014-06-10 Diane TroutDCC switched to https tree | commitdiff
2014-06-10 Diane TroutUpdate fastqname code & test code to better support... tree | commitdiff
2014-06-10 Diane TroutDirectly generate compressed fastq files from HiSeq... tree | commitdiff
2014-06-10 Diane Troutthe filename templates were moved from condorfastq... tree | commitdiff
2014-06-10 Diane TroutJust use the python 2 url parsers instead of trying... tree | commitdiff
2014-01-22 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2014-01-17 Diane TroutRemove django test environment setup code. tree | commitdiff
2014-01-17 Diane TroutImplement a encoded search to json-ld wrapper. tree | commitdiff
2014-01-17 Diane Troutmake sure @vocab url has a trailing #. Its needed to... tree | commitdiff
2014-01-17 Diane TroutUse new context creation functions to attach context... tree | commitdiff
2014-01-17 Diane TroutAdd functions to create a json-ld context and add names... tree | commitdiff
2014-01-15 Diane TroutUtility class for accessing ENCODE3's submit / data... tree | commitdiff
2014-01-15 Diane Troutremove some trailing whitespace tree | commitdiff
2014-01-15 Diane Troutremove some trailing whitespace tree | commitdiff
2014-01-08 Diane TroutRename stripNamespace strip_namespace tree | commitdiff
2013-12-23 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2013-12-17 Diane Troutremove some test code debugging print statements tree | commitdiff
2013-12-17 Diane TroutMerge branch 'django1.4' tree | commitdiff
2013-12-10 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-12-10 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-12-09 Diane TroutAdd new paired library types to our hackish list for... tree | commitdiff
2013-12-05 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-10-21 Diane TroutMerge remote-tracking branch 'brisby/django1.4' into... tree | commitdiff
2013-10-21 Diane TroutPass additional information to the trackhub. tree | commitdiff
2013-10-21 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-10-17 Diane TroutMerge branch 'master' into django1.4 tree | commitdiff
2013-10-17 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-10-11 Diane TroutMake it possible to set a label on a track. tree | commitdiff
2013-10-09 Diane Troutremove spurious newline tree | commitdiff
2013-09-24 Diane TroutShare more code to generate result tree. tree | commitdiff
2013-08-12 Diane TroutUpdate test data for renamed library type. tree | commitdiff
2013-08-10 Diane TroutAdd sortOrder and filtering parameters to the trackhub. tree | commitdiff
2013-07-22 Diane TroutTest changes to submission code. tree | commitdiff
2013-07-22 Diane TroutGenerate manifest.txt files for submitting to ENCODE3. tree | commitdiff
2013-07-22 Diane TroutAdd a generator that returns analysis nodes from a... tree | commitdiff
2013-07-18 Diane TroutAdd function to list the names for submissions from... tree | commitdiff
2013-07-08 Diane TroutUpdate test to work with species -> species_name rename. tree | commitdiff
2013-07-03 Diane TroutGenerate manifest files for ENCODE3 tree | commitdiff
2013-07-01 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-07-01 Diane TroutAdd the option to copy tree in addition to making a... tree | commitdiff
2013-07-01 Diane TroutInitial attempt to start generating trackHubs and manif... tree | commitdiff
2013-06-28 Diane TroutAdd option to copy source files for a submission. tree | commitdiff
2013-06-18 Diane TroutFurther improve reliability of make_tree_from. tree | commitdiff
2013-06-18 Diane Troutcopy_tree_from wasn't actually making any symlinks. tree | commitdiff
2013-02-01 Diane TroutPreliminary implementation of trackDb generation. tree | commitdiff
2013-02-01 Diane TroutForgot to import an exception I used tree | commitdiff
2012-12-13 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkfl... tree | commitdiff
2012-12-12 Diane TroutSimplify linking fastq files to their library id. tree | commitdiff
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htsworkflow sequencing LIMS software