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Use lane 1s matrix when pipeline was set to build matrix from all.
[htsworkflow.git]
/
htsworkflow
/
util
/
2012-06-27
Diane Trout
Auto-generate a secret key for django and store in...
tree
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commitdiff
2012-06-21
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-05-23
Diane Trout
Generate html reports when doing sparql queries with...
tree
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commitdiff
2012-05-16
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-05-16
Diane Trout
Tweak some test code to work with librdf 1.0.10
tree
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commitdiff
2012-05-12
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-05-12
Diane Trout
Prepare for submitting data to geo by:
tree
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commitdiff
2012-05-04
Diane Trout
100% test coverage for alphanum.py
tree
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commitdiff
2012-04-13
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-03-06
Diane Trout
Add module to convert multiple fastq files into a singl...
tree
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commitdiff
2012-03-06
Diane Trout
Add ability to print out json structures returned by...
tree
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commitdiff
2012-01-30
Diane Trout
Add ability to refresh library data from our htsw server
tree
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commitdiff
2012-01-25
Diane Trout
split a function into two. (A query execute function...
tree
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commitdiff
2011-12-20
Diane Trout
Handle dateTime timestamps in RDF.Nodes
tree
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commitdiff
2011-12-20
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-12-20
Diane Trout
Remove eXecute bit from modules
tree
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commitdiff
2011-12-20
Diane Trout
Try to figure out where UCSC is hosting our submitted...
tree
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commitdiff
2011-11-07
Diane Trout
Merge in removal of queuecommand sleep.
tree
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commitdiff
2011-11-05
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-11-04
Diane Trout
Use a logger initialized to the module name much more...
tree
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commitdiff
2011-07-29
Diane Trout
Construct unit tests for inventory/hard disk long term...
tree
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commitdiff
2011-07-20
Diane Trout
Remove spurious debugging print statement
tree
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commitdiff
2011-07-13
Diane Trout
Make sure we can roundtrip unicode characters via conve...
tree
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commitdiff
2011-07-07
Diane Trout
Don't use xsd:string for string data types in toTypedNode
tree
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commitdiff
2011-07-07
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-07-06
Diane Trout
Add some additional logging to util/rdflib.py to help...
tree
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commitdiff
2011-06-30
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-29
Diane Trout
Further clean up ddf generation.
tree
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commitdiff
2011-06-23
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-22
Diane Trout
Move parse_flowcell_id out of frontend.samples.results
tree
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commitdiff
2011-06-21
Diane Trout
Finish new RDF based ddf construction.
tree
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commitdiff
2011-06-18
Diane Trout
Rework ucsc gather to use RDF models for gathering...
tree
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commitdiff
2011-06-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-17
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-15
Diane Trout
Start to move all the RDF namespace definitions into...
tree
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commitdiff
2011-06-15
Diane Trout
Add module to parse UCSC DAF file.
tree
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commitdiff
2011-06-15
Diane Trout
Remove some uneeded linefeeds
tree
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commitdiff
2011-05-26
Diane Trout
Merge branch 'add-condition'
tree
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commitdiff
2011-05-09
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-05-09
Diane Trout
Validate fastq files in both phred33 & phred64 versions
tree
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commitdiff
2011-02-17
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-02-17
Diane Trout
Major updateds to encode_find for extracting encode...
tree
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commitdiff
2011-01-25
root
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-01-21
Diane Trout
Merge branch 'master' of gitosis@mus.cacr.caltech.edu...
tree
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commitdiff
2011-01-08
Diane Trout
Add validation script
0.5.0
tree
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commitdiff
2010-07-12
Diane Trout
Under some conditions urlerror doesn't have a code,
tree
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commitdiff
2010-06-10
Diane Trout
new api module actually needed logging.
tree
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commitdiff
2010-06-10
Diane Trout
Move the knowledge of the urls for the REST API to...
tree
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commitdiff
2010-05-08
Diane Trout
Matches can have trailing AGCT in addition to a number
tree
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commitdiff
2010-01-21
Diane Trout
Don't throw an error if library.cell_line is None.
tree
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commitdiff
2009-10-08
Diane Trout
In some cases test_retrive_config will attempt to norma...
tree
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commitdiff
2009-09-28
Diane Trout
Modify hdquery to not die when being imported on non...
tree
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commitdiff
2009-09-26
Diane Trout
Implement a client side config file generator.
tree
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commitdiff
2009-07-02
Brandon King
Made Diane's suggest json problem fix for python 2...
tree
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commitdiff
2009-06-30
Brandon King
two json modules... one for 2.5, one for 2.6... util...
tree
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commitdiff
2009-06-16
Diane Trout
Fixed a couple of problems.
tree
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commitdiff
2009-06-04
Brandon King
A simple command to request the hard drive serial numbe...
tree
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commitdiff
2009-05-30
Diane Trout
Don't print the discovered mount point.
tree
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commitdiff
2009-05-06
Diane Trout
Update htsworkflow.util.fctracker module to work with...
tree
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commitdiff
2009-05-05
Diane Trout
Allow overriding the queued commands environment.
tree
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commitdiff
2009-03-20
Diane Trout
Consume output form the subprocesses
tree
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commitdiff
2009-03-18
Diane Trout
only report cwd when starting the queue monitor, not...
tree
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commitdiff
2009-02-13
Diane Trout
Merge in the library list, detail, and results download...
tree
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commitdiff
2009-02-05
Diane Trout
Drop 'using %s as cwd' down to just debug level.
tree
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commitdiff
2008-12-24
Diane Trout
Add test cases for alphanum sort
tree
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commitdiff
2008-12-24
Diane Trout
Support sorting numbers along with the alphanumeric...
tree
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commitdiff
2008-12-22
Diane Trout
fix the multi-eland parser to strip off extensions...
tree
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commitdiff
2008-10-30
Diane Trout
Add "_slow" to the end of the queuecommand test functions
tree
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commitdiff
2008-10-15
Diane Trout
Rename trunk from gaworkflow to htsworkflow (and update...
tree
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commitdiff