Actually we want to capture the unanalyzed lanes if we can...

diff --git a/htsworkflow/pipelines/runfolder.py b/htsworkflow/pipelines/runfolder.py
index 67dc505f09aa878383f5ac5d3f0a6aa9de4f3f95..18a38e0ab1848cb128d987178c7c5ff4fc70e5d3 100644 (file)
--- a/htsworkflow/pipelines/runfolder.py
+++ b/htsworkflow/pipelines/runfolder.py
@@ -632,7 +632,7 @@ def save_raw_data(num_jobs, r, site, raw_format, cycle_dir):
     lanes = []
     for lane in r.gerald.lanes:
         lane_parameters = r.gerald.lanes.get(lane, None)
-        if lane_parameters is not None and lane_parameters.analysis != 'none':
+        if lane_parameters is not None:
             lanes.append(lane)
 
     run_name = srf.pathname_to_run_name(r.pathname)