- printf "<TD BGCOLOR=#%s>%0.2fM</TD>\n",$num_align{$lanes}{'bgcolor'},$num_align{$lanes}{'num'}/1000000.0;
+ printf "<TD BGCOLOR=#%s>Total Reads: %0.2fM<BR><BR>Pass Filter Reads: %0.2fM (%0.2f%%)<BR><BR>Adapters: %0.2fM (%0.2f%%)<BR><BR><B>Aligned Reads: %0.2fM (%0.2f%%)</B></TD>\n",
+ $num_align{$lanes}{'bgcolor'},
+ $num_align{$lanes}{'all'}/1000000.0,
+ $num_align{$lanes}{'pf'}/1000000.0,
+ 100*$num_align{$lanes}{'pf'}/$num_align{$lanes}{'all'},
+ $num_align{$lanes}{'adapter'}/1000000.0,
+ 100*$num_align{$lanes}{'adapter'}/$num_align{$lanes}{'pf'},
+ $num_align{$lanes}{'align'}/1000000.0,
+ 100*$num_align{$lanes}{'align'}/($num_align{$lanes}{'pf'}-$num_align{$lanes}{'adapter'});