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mark the example submission rule files as being raw, so the escapes dont get confused
[htsworkflow.git] / extra / ucsc_encode_submission / ucsc_gather.py
2011-12-20 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff
2011-12-20 Diane TroutMove ucsc_encode_submission code out of extra so nose... commit | commitdiff
2011-12-20 Diane TroutRemove eXecute bit from modules commit | commitdiff
2011-11-05 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff
2011-11-04 Diane TroutUse a logger initialized to the module name much more... commit | commitdiff
2011-09-30 Diane TroutConfigure daf variables in only one place. (daf.py) commit | commitdiff
2011-09-02 Diane TroutAdd error message for requesting link-daf but no daf... commit | commitdiff
2011-07-28 Diane TroutExamine the DAF to determine if the DDF needs to includ... commit | commitdiff
2011-07-20 Diane TroutStop copying attributes from library to a submission... commit | commitdiff
2011-07-07 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff
2011-06-30 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff
2011-06-30 Diane TroutThe proper DDF variable name for files to be submitted... commit | commitdiff
2011-06-30 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff
2011-06-29 Diane TroutFurther clean up ddf generation. commit | commitdiff
2011-06-23 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff
2011-06-22 Diane Troutallow running ucsc_gather --fastq without specifying... commit | commitdiff
2011-06-21 Diane TroutFinish new RDF based ddf construction. commit | commitdiff
2011-06-18 Diane TroutRework ucsc gather to use RDF models for gathering... commit | commitdiff
2011-06-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff
2011-06-17 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff
2011-06-15 Diane TroutMove code to make srf and qseq to fastq condor scripts... commit | commitdiff
2011-05-26 Diane TroutMerge branch 'add-condition' commit | commitdiff
2011-04-02 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff
2011-03-30 Diane TroutUpdate single vs paired guessing code commit | commitdiff
2011-02-17 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff
2011-02-17 Diane TroutMajor updateds to encode_find for extracting encode... commit | commitdiff
2011-02-17 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff
2011-02-16 Diane TroutAdd in patterns for Encode Elements submission commit | commitdiff
2011-02-15 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff
2011-02-15 Diane TroutMake plus/minus bigwig filename extension a bit more... commit | commitdiff
2011-02-14 Diane TroutAdd in support for generating md5sums for files commit | commitdiff
2011-01-25 rootMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff
2011-01-25 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff
2011-01-21 Diane TroutUpdate view names as per Cricket for the Jan 21st encod... commit | commitdiff
2011-01-21 Diane TroutMerge branch 'master' of gitosis@mus.cacr.caltech.edu... commit | commitdiff
2011-01-21 Diane TroutAdd function to ucsc submission tool to make symlink... commit | commitdiff
2010-11-17 Diane TroutCache the attributes for each type of fastq file. commit | commitdiff
2010-11-16 Diane TroutMap junctions.bed to the Junctions view. commit | commitdiff
2010-11-16 Diane TroutAutodetect location of *2fastq scripts commit | commitdiff
2010-11-15 Diane TroutDon't count failed flowcells when guessing if a library... commit | commitdiff
2010-11-07 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff
2010-11-05 Diane TroutUpdate to the new UCSC DAF file. commit | commitdiff
2010-11-03 Diane TroutCreate a class to handle mapping extension to ucsc... commit | commitdiff
2010-11-02 Diane TroutTwo lines between functions (trivial change) commit | commitdiff
2010-10-22 Diane TroutReport version number derived from git tag. commit | commitdiff
2010-08-24 Diane TroutSplit parts of build_fastqs into a seperate function. commit | commitdiff
2010-07-14 Diane TroutGeorgi used slightly different extensions for the secon... commit | commitdiff
2010-07-12 Diane TroutUse the htsworkflow API to determine if a flowcell... commit | commitdiff
2010-07-09 Diane TroutSince srf2named_fastq detects what type of srf file... commit | commitdiff
2010-07-08 Diane TroutAdd option to force overwriting old fastqs. commit | commitdiff
2010-06-22 Diane TroutSave changes needed to submit to UCSC in Jun 2010. commit | commitdiff
2010-06-11 Diane TroutCollect fastqs by read and add them to the configuratio... commit | commitdiff
2010-06-11 Diane TroutPut partial support back in for srf files. commit | commitdiff
2010-06-10 Diane TroutAdd script to try and build submissions to the UCSC... commit | commitdiff
htsworkflow sequencing LIMS software