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allow running ucsc_gather --fastq without specifying an analysis name or model
[htsworkflow.git]
/
extra
/
ucsc_encode_submission
/
ucsc_gather.py
2011-06-22
Diane Trout
allow running ucsc_gather --fastq without specifying...
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2011-06-18
Diane Trout
Rework ucsc gather to use RDF models for gathering...
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2011-06-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-06-17
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-06-15
Diane Trout
Move code to make srf and qseq to fastq condor scripts...
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2011-05-26
Diane Trout
Merge branch 'add-condition'
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2011-04-02
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-03-30
Diane Trout
Update single vs paired guessing code
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2011-02-17
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-02-17
Diane Trout
Major updateds to encode_find for extracting encode...
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2011-02-17
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-02-16
Diane Trout
Add in patterns for Encode Elements submission
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2011-02-15
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-02-15
Diane Trout
Make plus/minus bigwig filename extension a bit more...
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2011-02-14
Diane Trout
Add in support for generating md5sums for files
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2011-01-25
root
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-01-25
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-01-21
Diane Trout
Update view names as per Cricket for the Jan 21st encod...
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2011-01-21
Diane Trout
Merge branch 'master' of gitosis@mus.cacr.caltech.edu...
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2011-01-21
Diane Trout
Add function to ucsc submission tool to make symlink...
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2010-11-17
Diane Trout
Cache the attributes for each type of fastq file.
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2010-11-16
Diane Trout
Map junctions.bed to the Junctions view.
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2010-11-16
Diane Trout
Autodetect location of *2fastq scripts
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2010-11-15
Diane Trout
Don't count failed flowcells when guessing if a library...
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2010-11-07
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2010-11-05
Diane Trout
Update to the new UCSC DAF file.
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2010-11-03
Diane Trout
Create a class to handle mapping extension to ucsc...
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2010-11-02
Diane Trout
Two lines between functions (trivial change)
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2010-10-22
Diane Trout
Report version number derived from git tag.
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2010-08-24
Diane Trout
Split parts of build_fastqs into a seperate function.
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2010-07-14
Diane Trout
Georgi used slightly different extensions for the secon...
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2010-07-12
Diane Trout
Use the htsworkflow API to determine if a flowcell...
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2010-07-09
Diane Trout
Since srf2named_fastq detects what type of srf file...
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2010-07-08
Diane Trout
Add option to force overwriting old fastqs.
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2010-06-22
Diane Trout
Save changes needed to submit to UCSC in Jun 2010.
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2010-06-11
Diane Trout
Collect fastqs by read and add them to the configuratio...
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2010-06-11
Diane Trout
Put partial support back in for srf files.
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2010-06-10
Diane Trout
Add script to try and build submissions to the UCSC...
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