2008-09-18 |
Diane Trout | Be a little more informative about how many process... |
tree | commitdiff |
2008-09-05 |
Diane Trout | extract status field out of flowcell name. |
tree | commitdiff |
2008-08-29 |
Diane Trout | Add support for converting mutli-eland files from pipel... |
tree | commitdiff |
2008-08-29 |
Diane Trout | insert stub clean_runs function to list roughly what... |
tree | commitdiff |
2008-08-14 |
Diane Trout | In trying to get scripts/srf to work I needed to set... |
tree | commitdiff |
2008-08-14 |
Diane Trout | refactor code to make a runfolder out of the UnitTest... |
tree | commitdiff |
2008-08-14 |
Diane Trout | we might as well automatically save the Summary.htm... |
tree | commitdiff |
2008-08-14 |
Diane Trout | Utility to create srf files from a bustard directory |
tree | commitdiff |
2008-08-11 |
Diane Trout | A bit of refactoring toward making the run progress... |
tree | commitdiff |
2008-07-16 |
Diane Trout | The older pipeline runs had a Phi-X control lane which... |
tree | commitdiff |
2008-07-15 |
Diane Trout | Provide cross referencing information to the libraries... |
tree | commitdiff |
2008-07-07 |
Diane Trout | Finish updating the Summary parsing file to handle... |
tree | commitdiff |
2008-07-03 |
Diane Trout | Partially handle the changed Summary.htm file from... |
tree | commitdiff |
2008-06-24 |
Diane Trout | Detect if our watch is on a mount point. |
tree | commitdiff |
2008-06-17 |
Diane Trout | Add QueueCommands, a class that allows controlling... |
tree | commitdiff |
2008-06-06 |
Diane Trout | don't use os.path.normpath when pathname is null in... |
tree | commitdiff |
2008-06-05 |
Diane Trout | add --extract-results to scripts/runfolder |
tree | commitdiff |
2008-05-29 |
Diane Trout | Some of the older flow cells used a default genome... |
tree | commitdiff |
2008-05-23 |
Diane Trout | Update pipeline.gerald to handle eland_result files... |
tree | commitdiff |
2008-05-19 |
Brandon King | Begining of consolidation with trunk/stanford variatant... |
tree | commitdiff |
2008-05-15 |
Diane Trout | add rerun_eland.py which extracts sub-sequences from... |
tree | commitdiff |
2008-05-14 |
Diane Trout | separate computing the sample/lane_id names from calcul... |
tree | commitdiff |
2008-05-14 |
Brandon King | v0.2.0 progress |
tree | commitdiff |
2008-05-13 |
Diane Trout | add additional debugging logging to retrieve_config... |
tree | commitdiff |
2008-05-13 |
Diane Trout | logging.basicConfig should only be in top level scripts. |
tree | commitdiff |
2008-05-10 |
Diane Trout | make it possible to include all alignments, not just... |
tree | commitdiff |
2008-05-10 |
Diane Trout | Keep track of sample_name and lane_id computed from... |
tree | commitdiff |
2008-05-09 |
Diane Trout | Make the runfolder splitting patch a bit more python... |
tree | commitdiff |
2008-05-09 |
Diane Trout | Move runfolder analysis classes out of scripts/runfolde... |
tree | commitdiff |
2008-04-22 |
Diane Trout | also since nothing is currently using the pipelineFinis... |
tree | commitdiff |
2008-04-22 |
Diane Trout | Extend makebed to lookup metadata out of a copy of... |
tree | commitdiff |
2008-04-21 |
Diane Trout | split the library script into a reusable database/repor... |
tree | commitdiff |
2008-04-19 |
Lorian Schaeffer | Added the same changes I made to the 1.1 branch, all... |
tree | commitdiff |
2008-03-25 |
Lorian Schaeffer | Put ten_nM_dilution field back in library table, and... |
tree | commitdiff |
2008-03-21 |
Lorian Schaeffer | Hopefully undid accidental changes to views.py and... |
tree | commitdiff |
2008-03-21 |
Lorian Schaeffer | Added a dropdown status field to flowcell table |
tree | commitdiff |
2008-03-20 |
Lorian Schaeffer | Created table Person, with required fields "name" and... |
tree | commitdiff |
2008-03-20 |
Lorian Schaeffer | Flowcell patch: |
tree | commitdiff |
2008-03-20 |
Lorian Schaeffer | Removed fields kit_#_lot from library table (they were... |
tree | commitdiff |
2008-03-19 |
Lorian Schaeffer | Library patch: |
tree | commitdiff |
2008-01-29 |
Diane Trout | DummyOptions didn't define a genome_dir member before... |
tree | commitdiff |
2008-01-23 |
Diane Trout | return most recent genome build for the pipeline config... |
tree | commitdiff |
2008-01-23 |
Brandon King | Latest genome build, eland_config file temp. solution... |
tree | commitdiff |
2008-01-17 |
Brandon King | Added a new get_cycles(recipe_xml_filepath) function in |
tree | commitdiff |
2008-01-16 |
Brandon King | Spoolwatch function for getting cycle number from Recip... |
tree | commitdiff |
2008-01-16 |
Brandon King | Attempt to support case insensitive config file names. |
tree | commitdiff |
2008-01-16 |
Brandon King | Fix for tickets #45 & #47 |
tree | commitdiff |
2008-01-15 |
Diane Trout | Oops, forgot to provide a null body to my the stub... |
tree | commitdiff |
2008-01-15 |
Diane Trout | pyinotify rm_watch takes a list, not a dictionary. |
tree | commitdiff |
2008-01-15 |
Diane Trout | move the autotmation scripts into gaworkflow.automation |
tree | commitdiff |
2008-01-09 |
Diane Trout | always trigger a copy when we receive the sequencingFin... |
tree | commitdiff |
2008-01-08 |
Diane Trout | make sequencingFinished return something instead of... |
tree | commitdiff |
2008-01-08 |
Diane Trout | Remove unnecessary code from the runner.py module |
tree | commitdiff |
2008-01-04 |
Diane Trout | use \w for alphanumeric flow cell IDs |
tree | commitdiff |
2008-01-04 |
Brandon King | Runner now reports status when user sends status request! |
tree | commitdiff |
2008-01-04 |
Brandon King | Runner now notifies users about success or failure... |
tree | commitdiff |
2008-01-04 |
Brandon King | Runner seems to work with running the pipeline when... |
tree | commitdiff |
2008-01-04 |
Brandon King | Work towards getting runner to work properly. |
tree | commitdiff |
2008-01-04 |
Brandon King | Ok, one more option required. |
tree | commitdiff |
2008-01-04 |
Brandon King | Forgot an option in the DummyOptions object. |
tree | commitdiff |
2008-01-03 |
Brandon King | Work towards disabling command-line parsing outside... |
tree | commitdiff |
2008-01-02 |
Brandon King | Updated regexs to support new and "improved" flow cell... |
tree | commitdiff |
2007-12-30 |
Diane Trout | direntry parser wasn't eating a trailing newline |
tree | commitdiff |
2007-12-30 |
Diane Trout | forgot to rename the caller and called when refactoring... |
tree | commitdiff |
2007-12-30 |
Diane Trout | split rsync directory listing correctly |
tree | commitdiff |
2007-12-22 |
Diane Trout | add a , to make customizing list of template dirs easier |
tree | commitdiff |
2007-12-21 |
Brandon King | Work towards a working runner bot... still needs a... |
tree | commitdiff |
2007-12-14 |
Brandon King | [project @ gaworkflow.runner progress] |
tree | commitdiff |
2007-12-11 |
Diane Trout | [project @ add skeleton for runner] |
tree | commitdiff |
2007-12-11 |
Diane Trout | [project @ send messages to notify_runner not self... |
tree | commitdiff |
2007-12-11 |
Brandon King | [project @ Bypass pipe lock mystery bug for configure... |
tree | commitdiff |
2007-12-11 |
Diane Trout | [project @ add a parser to spoolwatcher] |
tree | commitdiff |
2007-12-04 |
Brandon King | [project @ Config Step: Detect missing cycles patch] |
tree | commitdiff |
2007-12-10 |
Diane Trout | [project @ rename runFinished to sequencingFinished] |
tree | commitdiff |
2007-12-10 |
Diane Trout | [project @ make spoolwatcher a benderjab bot] |
tree | commitdiff |
2007-12-10 |
Diane Trout | [project @ use XmlRpcBot.rpc_send] |
tree | commitdiff |
2007-12-10 |
Diane Trout | [project @ Require a resource for JIDs that are used... |
tree | commitdiff |
2007-12-10 |
Diane Trout | [project @ moved check_option into benderjab] |
tree | commitdiff |
2007-12-08 |
Diane Trout | [project @ update CopierBot to new logging daemonizable... |
tree | commitdiff |
2007-11-30 |
Brandon King | [project @ Small documentation fix for retrieve_config.] |
tree | commitdiff |
2007-11-30 |
Brandon King | [project @ Scientific name is no longer a unique field.] |
tree | commitdiff |
2007-11-27 |
Brandon King | [project @ Missing __init__.py file in pipeline subpack... |
tree | commitdiff |
2007-11-26 |
Brandon King | [project @ run_status gerald correction (over estimated... |
tree | commitdiff |
2007-11-26 |
Brandon King | [project @ run_status correct firecrest expected file... |
tree | commitdiff |
2007-11-22 |
Brandon King | [project @ Run default changed to full run] |
tree | commitdiff |
2007-11-22 |
Brandon King | [project @ Shortend the s_generating regex; minor bug... |
tree | commitdiff |
2007-11-21 |
Brandon King | [project @ Monitor status implementation + config_pipel... |
tree | commitdiff |
2007-11-20 |
Brandon King | [project @ Added GARunStatus class for tracking percent... |
tree | commitdiff |
2007-11-20 |
Brandon King | [project @ Moved ga_frontend to gaworkflow.frontend... |
tree | commitdiff |
2007-11-20 |
Diane Trout | [project @ move brandon's pipeline handling code into... |
tree | commitdiff |
2007-11-20 |
Diane Trout | [project @ rename python module to gaworkflow from... |
tree | commitdiff |
|