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Since srf2named_fastq detects what type of srf file I can remove
[htsworkflow.git]
/
htsworkflow
/
2010-07-07
Diane Trout
This still isn't ideal as the RESULTS_HOME_DIR is still...
tree
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commitdiff
2010-06-15
Diane Trout
Update the 'flowcell started' email message to include...
tree
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commitdiff
2010-06-14
Diane Trout
Rename avg_lib_size to gel_cut_size, and add insert_size
tree
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commitdiff
2010-06-14
Diane Trout
Update internal copy of the django admin/templates...
tree
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commitdiff
2010-06-10
Diane Trout
Extend htsworkflow.pipelines.sequences to also try...
tree
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commitdiff
2010-06-10
Diane Trout
Move the code to scan the sequence file archive to...
tree
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commitdiff
2010-06-10
Diane Trout
new api module actually needed logging.
tree
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commitdiff
2010-06-10
Diane Trout
Move the knowledge of the urls for the REST API to...
tree
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commitdiff
2010-05-29
Diane Trout
Add in extra fields lorian asked for to library detail...
tree
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commitdiff
2010-05-14
Brandon King
A patch that allows printing more than 11 labels at...
tree
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commitdiff
2010-05-13
Brandon King
Default to pointing to the Ubuntu python location for...
tree
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commitdiff
2010-05-08
Diane Trout
Matches can have trailing AGCT in addition to a number
tree
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commitdiff
2010-05-07
Brandon King
Disabling 'delete selected'.
tree
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commitdiff
2010-04-29
Brandon King
Added a 'Print Labels' action to the Library Admin...
tree
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commitdiff
2010-04-23
Diane Trout
Update summary script to read from the GERALD Summary...
tree
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commitdiff
2010-04-10
Brandon King
WARNING: Django 1.0.2 to Django 1.1.1 compatibility...
tree
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commitdiff
2010-03-05
Diane Trout
Report hidden field in the library API
tree
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commitdiff
2010-03-05
Diane Trout
Use the HTS workflow API to figure out the library...
tree
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commitdiff
2010-02-22
Diane Trout
there is no such thing as sequence_extended. I was...
tree
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commitdiff
2010-02-04
Diane Trout
Return affiliation, library name, and comment in the...
tree
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commitdiff
2010-01-30
Diane Trout
Update the inventory tracker code for the split from...
tree
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commitdiff
2010-01-28
Diane Trout
Adds a json api 'lanes_for' feature
tree
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commitdiff
2010-01-28
Diane Trout
Force auth_backend error messages to sys stderr, as
tree
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commitdiff
2010-01-27
Diane Trout
Remove debugging code that breaks mod_wsgi
tree
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commitdiff
2010-01-26
Diane Trout
Added 'lanes_for' which will show recent flowcell lanes...
tree
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commitdiff
2010-01-22
Diane Trout
Refine user handling.
tree
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commitdiff
2010-01-21
Diane Trout
Update test code to deal with the switch to storing...
tree
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commitdiff
2010-01-21
Diane Trout
Don't throw an error if library.cell_line is None.
tree
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commitdiff
2009-12-15
Diane Trout
Add flowcell/lane information for a library to the...
tree
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commitdiff
2009-12-15
Diane Trout
Define the unicode() function for HTSUser to also repor...
tree
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commitdiff
2009-12-15
Diane Trout
Include information about the flowcell run date on...
tree
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commitdiff
2009-12-15
Diane Trout
Make the basic library page show up when javascript...
tree
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commitdiff
2009-12-15
Diane Trout
Tell people to use the https address so it'll work...
tree
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commitdiff
2009-12-11
Diane Trout
Modify the srf utility to tar.bz2 the qseq files instea...
tree
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commitdiff
2009-11-25
Diane Trout
Watch for a list of files to indicate that the flowcell...
tree
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commitdiff
2009-11-13
Diane Trout
Override extjs's rather harsh stylesheet so the library...
tree
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commitdiff
2009-11-10
Diane Trout
Don't add the post_run_command unless the option and...
tree
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commitdiff
2009-11-10
Diane Trout
Remport that the pipeline will be done in X to Y days...
tree
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commitdiff
2009-10-27
Diane Trout
update inventory status template to use new field name...
tree
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commitdiff
2009-10-27
Diane Trout
Turn the library_id back into the primary key for sampl...
tree
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commitdiff
2009-10-17
Diane Trout
Figure out the absolute path to the runfolder for passi...
tree
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commitdiff
2009-10-08
Diane Trout
Also use the javascript dual panel choice box for tags.
tree
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commitdiff
2009-10-08
Diane Trout
In some cases test_retrive_config will attempt to norma...
tree
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commitdiff
2009-10-08
Diane Trout
Use raw_id_fields for the library ID in the Flowcell...
tree
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commitdiff
2009-10-08
Diane Trout
Add the ability not to build srf files.
tree
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commitdiff
2009-10-06
Diane Trout
Add an account number field to a library. (Note SCHEMA...
tree
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commitdiff
2009-10-06
Diane Trout
Add a bread crumb to the send started email page.
tree
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commitdiff
2009-10-06
Diane Trout
Remove spurious print
tree
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commitdiff
2009-10-06
Diane Trout
Test that the email notification actually generates...
tree
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commitdiff
2009-10-06
Diane Trout
Use eland_extended or eland_pair instead of eland for...
tree
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commitdiff
2009-10-06
Diane Trout
Default to sequencing if we don't have a genome for...
tree
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commitdiff
2009-10-02
Diane Trout
Test the updated version of extract results that builds...
tree
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commitdiff
2009-09-30
Diane Trout
Add building srf files to runfolder as part of --extrac...
tree
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commitdiff
2009-09-28
Diane Trout
Modify hdquery to not die when being imported on non...
tree
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commitdiff
2009-09-26
Diane Trout
The config file should also set the SEQUENCE_FORMAT
tree
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commitdiff
2009-09-26
Diane Trout
HttpRequest.getcode doesn't exist in python 2.4, use...
tree
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commitdiff
2009-09-26
Diane Trout
Implement a client side config file generator.
tree
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commitdiff
2009-09-26
Diane Trout
Print library.library_id instead of the flowcell.librar...
tree
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commitdiff
2009-09-23
Diane Trout
Return species information as part of the flowcell...
tree
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commitdiff
2009-09-19
Diane Trout
Put a stub species_json in, as I'd listed it in the...
tree
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commitdiff
2009-09-19
Diane Trout
Allow grabbing library information via json.
tree
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commitdiff
2009-09-19
Diane Trout
Add a /config/<fcid>/json url that returns information...
tree
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commitdiff
2009-09-19
Diane Trout
Django really wanted a 404 template.
tree
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commitdiff
2009-09-16
Diane Trout
Force addition of HTSUser object if someone is creating...
tree
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commitdiff
2009-09-16
Diane Trout
Replace some prints with logging.info messages and
tree
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commitdiff
2009-09-14
Diane Trout
Fix ticket:145 this patch includes the tar.bz2 extensio...
tree
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commitdiff
2009-09-11
Diane Trout
Apparently I should've rendered the emails in plain...
tree
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commitdiff
2009-09-11
Diane Trout
None is better than a baddly munged string for when...
tree
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commitdiff
2009-09-10
Diane Trout
Don't crash if there are no lane result summary entries...
tree
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commitdiff
2009-09-10
Diane Trout
Report if the Summary.htm file is missing the Lane...
tree
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commitdiff
2009-09-10
Diane Trout
Remove spurious pring debugging statements as they...
tree
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commitdiff
2009-09-03
Brandon King
wsgi print error fixed.
tree
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commitdiff
2009-09-02
Diane Trout
remove spurious debug print statement
tree
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commitdiff
2009-09-01
Diane Trout
Report who the site managers are for the BCC
tree
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commitdiff
2009-08-25
Brandon King
Added control_lane column to Flowcell.
tree
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commitdiff
2009-08-22
Brandon King
No printing allowed; fixed.
tree
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commitdiff
2009-08-22
Diane Trout
Now adding a user adds the key linking the htsuser...
tree
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commitdiff
2009-08-22
Brandon King
Implemented custom templates by inventory type using...
tree
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commitdiff
2009-08-20
Diane Trout
Implement a send started email feature.
tree
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commitdiff
2009-08-20
Diane Trout
Reorder imports in model to make me happy.
tree
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commitdiff
2009-08-19
Diane Trout
Use hasattr instead of checking for django version...
tree
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commitdiff
2009-08-19
Brandon King
Finished removing bcprinter module by moving what littl...
tree
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commitdiff
2009-08-19
Brandon King
Moved bcprinter.util to bcmagic.util.
tree
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commitdiff
2009-08-19
Brandon King
Moved bcprinter/util.py to bcmagic/util.py
tree
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commitdiff
2009-08-19
Brandon King
Hard Drive Shell label made by Lorian; templatized...
tree
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commitdiff
2009-08-19
Brandon King
Admin compatibility for changes in Django >= 1.1.
tree
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commitdiff
2009-08-19
Diane Trout
Forgot to update one request to request.REQUEST variabl...
tree
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commitdiff
2009-08-19
Diane Trout
Convert stanford/hudson alpha's updStatus to work with...
tree
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commitdiff
2009-08-18
Diane Trout
Update hudson alpha's eland config file generator to...
tree
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commitdiff
2009-08-18
Diane Trout
Update eland_config generator to work with the new...
tree
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commitdiff
2009-08-18
Diane Trout
Update Rami's flowcell report to work with our new...
tree
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commitdiff
2009-08-18
Diane Trout
Add a custom (inherited) user object named HTSUser...
tree
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commitdiff
2009-08-18
Diane Trout
Fix code where the python str() function had been overr...
tree
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commitdiff
2009-08-14
Brandon King
Lorian's request for a thin comment field implemented.
tree
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commitdiff
2009-08-14
Brandon King
Lorian's requested filter by status; requires at least...
tree
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commitdiff
2009-08-13
Brandon King
New way of accessing pM for a lane in _summary_stats
tree
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commitdiff
2009-08-13
Brandon King
Lane number fix for _summary_stats function and library...
tree
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commitdiff
2009-08-13
Brandon King
New lane model patch for library_to_flowcells view.
tree
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commitdiff
2009-08-11
Brandon King
Script for conversion of db; start of fixes brought...
tree
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commitdiff
2009-08-10
Brandon King
print killing wsgi; minor fix.
tree
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commitdiff
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