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2014-01-08	Diane Trout	Rename stripNamespace strip_namespace	commit \| commitdiff \| tree
2013-12-23	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2013-12-23	Diane Trout	update settings for new location of WSGI_APPLICATION...	commit \| commitdiff \| tree
2013-12-23	Diane Trout	fix quote typos with the {% static %} template tag	commit \| commitdiff \| tree
2013-12-23	Diane Trout	Move wsgi into the actual project root.	commit \| commitdiff \| tree
2013-12-17	Diane Trout	remove some test code debugging print statements	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Update WSGI_APPLICATION to point to the updated location...	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Inventory works, even though its was hidden between...	commit \| commitdiff \| tree
2013-12-17	Diane Trout	move an example result directory into git and use it...	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Merge branch 'django1.4'	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Update requirements to require diango 1.6	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Start simplyfing settings by using from settings_local...	commit \| commitdiff \| tree
2013-12-17	Diane Trout	add new wsgi.py driver	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Update templates to consistently use {% static %} instead...	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Move loading DTD into a function as the call caused...	commit \| commitdiff \| tree
2013-12-17	Diane Trout	move django imports around, change one function call...	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Update exception caught for newer django?	commit \| commitdiff \| tree
2013-12-17	Diane Trout	use url function call for url definition instead of...	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Move use of settings default into the function instead...	commit \| commitdiff \| tree
2013-12-10	Diane Trout	Update manage script to django 1.6	commit \| commitdiff \| tree
2013-12-10	Diane Trout	Being able to filter on paired end runs might be useful	commit \| commitdiff \| tree
2013-12-10	Diane Trout	remove deprecated module django.contrib.databrowse	commit \| commitdiff \| tree
2013-12-10	Diane Trout	With 1.6 boolean field changed to default Null, so...	commit \| commitdiff \| tree
2013-12-10	Diane Trout	Django 1.6 is pickier about enforcing referential integrity	commit \| commitdiff \| tree
2013-12-10	Diane Trout	Fix urls patterns import to be compatible with django 1.6	commit \| commitdiff \| tree
2013-12-10	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-12-10	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-12-09	Diane Trout	Add new paired library types to our hackish list for...	commit \| commitdiff \| tree
2013-12-06	Diane Trout	Attempt to be robust to not having an alignment in...	commit \| commitdiff \| tree
2013-12-06	Diane Trout	Attempt to be robust to not having an alignment in...	commit \| commitdiff \| tree
2013-12-06	Diane Trout	After implementing proper tests get a working implementation...	commit \| commitdiff \| tree
2013-12-06	Diane Trout	After implementing proper tests get a working implementation...	commit \| commitdiff \| tree
2013-12-05	Diane Trout	fix typo	commit \| commitdiff \| tree
2013-12-05	Diane Trout	fix typo	commit \| commitdiff \| tree
2013-12-05	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-12-05	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-12-05	Diane Trout	Recent IPAR xml config blocks include the runfolder...	commit \| commitdiff \| tree
2013-12-05	Diane Trout	Update for UCSC's validate manifest 1.7	commit \| commitdiff \| tree
2013-12-05	Diane Trout	Provide reporting of what command failed when bigWigInfo...	commit \| commitdiff \| tree
2013-12-05	Diane Trout	Recent IPAR xml config blocks include the runfolder...	commit \| commitdiff \| tree
2013-12-05	Diane Trout	Add a way to report what url was failing	commit \| commitdiff \| tree
2013-12-02	Diane Trout	Catch and report another class of exception	commit \| commitdiff \| tree
2013-10-21	Diane Trout	Merge remote-tracking branch 'brisby/django1.4' into...	commit \| commitdiff \| tree
2013-10-21	Diane Trout	Pass additional information to the trackhub.	commit \| commitdiff \| tree
2013-10-21	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-10-17	Diane Trout	Merge branch 'master' into django1.4	commit \| commitdiff \| tree
2013-10-17	Diane Trout	Add command line feature to srf command	commit \| commitdiff \| tree
2013-10-17	Diane Trout	Dynamically respond to the number of lanes.	commit \| commitdiff \| tree
2013-10-17	Diane Trout	Fix typo.	commit \| commitdiff \| tree
2013-10-17	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-10-17	Diane Trout	Implement a wrapper around bigWigInfo to report bigWig...	commit \| commitdiff \| tree
2013-10-11	Diane Trout	Make it possible to set a label on a track.	commit \| commitdiff \| tree
2013-10-09	Diane Trout	add replaces / replace_reason generation to trackhub...	commit \| commitdiff \| tree
2013-10-09	Diane Trout	remove spurious newline	commit \| commitdiff \| tree
2013-10-08	Diane Trout	Be more forgiving about the md5sum filename path	commit \| commitdiff \| tree
2013-10-08	Diane Trout	Add helpful logging information to explain missing...	commit \| commitdiff \| tree
2013-09-24	Diane Trout	Share more code to generate result tree.	commit \| commitdiff \| tree
2013-08-12	Diane Trout	Update test data for renamed library type.	commit \| commitdiff \| tree
2013-08-10	Diane Trout	Add sortOrder and filtering parameters to the trackhub.	commit \| commitdiff \| tree
2013-07-22	Diane Trout	Move version finding code into the util directory.	commit \| commitdiff \| tree
2013-07-22	Diane Trout	Test changes to submission code.	commit \| commitdiff \| tree
2013-07-22	Diane Trout	Generate manifest.txt files for submitting to ENCODE3.	commit \| commitdiff \| tree
2013-07-22	Diane Trout	turtle writing improvements.	commit \| commitdiff \| tree
2013-07-22	Diane Trout	Add a generator that returns analysis nodes from a...	commit \| commitdiff \| tree
2013-07-20	Diane Trout	Add python namespace for encode3 RDF namespace	commit \| commitdiff \| tree
2013-07-18	Diane Trout	Add function to list the names for submissions from...	commit \| commitdiff \| tree
2013-07-17	Diane Trout	Add function to parse scp / ssh style URLs.	commit \| commitdiff \| tree
2013-07-16	Diane Trout	Deleting commented out code.	commit \| commitdiff \| tree
2013-07-08	Diane Trout	Update test to work with species -> species_name rename.	commit \| commitdiff \| tree
2013-07-03	Diane Trout	Generate manifest files for ENCODE3	commit \| commitdiff \| tree
2013-07-01	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-07-01	Diane Trout	Add the option to copy tree in addition to making a...	commit \| commitdiff \| tree
2013-07-01	Diane Trout	Initial attempt to start generating trackHubs and manifest...	commit \| commitdiff \| tree
2013-07-01	Diane Trout	type checking more detailed than Literal doesn't work...	commit \| commitdiff \| tree
2013-06-28	Diane Trout	Add option to copy source files for a submission.	commit \| commitdiff \| tree
2013-06-18	Diane Trout	Further improve reliability of make_tree_from.	commit \| commitdiff \| tree
2013-06-18	Diane Trout	copy_tree_from wasn't actually making any symlinks.	commit \| commitdiff \| tree
2013-06-18	Diane Trout	Update tests for new version of redland rdf lib.	commit \| commitdiff \| tree
2013-06-18	Diane Trout	Remove deprecated adminmedia template tag from loader.	commit \| commitdiff \| tree
2013-06-18	Diane Trout	Replace deprecated django.contrib adminmedia with staticfiles.	commit \| commitdiff \| tree
2013-06-18	Diane Trout	Use proper User model import.	commit \| commitdiff \| tree
2013-02-01	Diane Trout	Preliminary implementation of trackDb generation.	commit \| commitdiff \| tree
2013-02-01	Diane Trout	Forgot to import an exception I used	commit \| commitdiff \| tree
2013-02-01	Diane Trout	Make a sample key list to go along with our lane list	commit \| commitdiff \| tree
2013-01-16	Diane Trout	Support scanning HiSeq runs with multiple analyses.	commit \| commitdiff \| tree
2013-01-16	Diane Trout	Thrown an exception if we can't parse base calling...	commit \| commitdiff \| tree
2013-01-15	Diane Trout	Start making documentation for htsworkflow.	commit \| commitdiff \| tree
2013-01-09	Diane Trout	A better resolution to a possible circular dependency.	commit \| commitdiff \| tree
2013-01-09	Diane Trout	Don't accidentally transform an object into a tuple.	commit \| commitdiff \| tree
2013-01-08	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-01-08	Diane Trout	Try to make Aligned result directories optional in...	commit \| commitdiff \| tree
2013-01-08	Diane Trout	Add unaligned stats files to hiseq test case	commit \| commitdiff \| tree
2013-01-08	Diane Trout	Tweak timestamp format.	commit \| commitdiff \| tree
2012-12-14	Diane Trout	Gerald's time-stamp format was inconsistent.	commit \| commitdiff \| tree
2012-12-14	Diane Trout	Make my ChangeList sub-class compatibile with Django 1.3	commit \| commitdiff \| tree
2012-12-13	Diane Trout	Make the inventory pages work with the new HTSChangeList.	commit \| commitdiff \| tree
2012-12-13	Diane Trout	Django 1.4 requires the csrf token for posts.	commit \| commitdiff \| tree
2012-12-13	Diane Trout	Use specific time formatting instead of locale '%c'	commit \| commitdiff \| tree
2012-12-13	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2012-12-12	Diane Trout	Simplify linking fastq files to their library id.	commit \| commitdiff \| tree
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