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2009-12-01	Diane Trout	Replace '.' with 'N' in the sequence from qseq files.	commit \| commitdiff \| tree
2009-12-01	Diane Trout	Fix typo in srf command	commit \| commitdiff \| tree
2009-12-01	Diane Trout	Also include the read ID in the fastq header	commit \| commitdiff \| tree
2009-12-01	Diane Trout	Add a simple utility to convert qseq to fastq files.	commit \| commitdiff \| tree
2009-11-25	Diane Trout	Watch for a list of files to indicate that the flowcell...	commit \| commitdiff \| tree
2009-11-13	Diane Trout	Override extjs's rather harsh stylesheet so the library...	commit \| commitdiff \| tree
2009-11-10	Diane Trout	Don't add the post_run_command unless the option and...	commit \| commitdiff \| tree
2009-11-10	Diane Trout	Remport that the pipeline will be done in X to Y days...	commit \| commitdiff \| tree
2009-10-27	Diane Trout	update inventory status template to use new field name...	commit \| commitdiff \| tree
2009-10-27	Diane Trout	Allow specifying which database to convert	commit \| commitdiff \| tree
2009-10-27	Diane Trout	Turn the library_id back into the primary key for samples_li...	commit \| commitdiff \| tree
2009-10-17	Diane Trout	Figure out the absolute path to the runfolder for passing...	commit \| commitdiff \| tree
2009-10-08	Diane Trout	Also use the javascript dual panel choice box for tags.	commit \| commitdiff \| tree
2009-10-08	Diane Trout	In some cases test_retrive_config will attempt to normalize...	commit \| commitdiff \| tree
2009-10-08	Diane Trout	Use raw_id_fields for the library ID in the Flowcell...	commit \| commitdiff \| tree
2009-10-08	Diane Trout	Add the ability not to build srf files.	commit \| commitdiff \| tree
2009-10-06	Diane Trout	Add an account number field to a library. (Note SCHEMA...	commit \| commitdiff \| tree
2009-10-06	Diane Trout	Add a bread crumb to the send started email page.	commit \| commitdiff \| tree
2009-10-06	Diane Trout	Remove spurious print	commit \| commitdiff \| tree
2009-10-06	Diane Trout	Test that the email notification actually generates...	commit \| commitdiff \| tree
2009-10-06	Diane Trout	Use eland_extended or eland_pair instead of eland for...	commit \| commitdiff \| tree
2009-10-06	Diane Trout	Default to sequencing if we don't have a genome for...	commit \| commitdiff \| tree
2009-10-02	Diane Trout	Test the updated version of extract results that builds...	commit \| commitdiff \| tree
2009-09-30	Diane Trout	Add building srf files to runfolder as part of --extract...	commit \| commitdiff \| tree
2009-09-28	Diane Trout	Modify hdquery to not die when being imported on non...	commit \| commitdiff \| tree
2009-09-26	Diane Trout	The config file should also set the SEQUENCE_FORMAT	commit \| commitdiff \| tree
2009-09-26	Diane Trout	HttpRequest.getcode doesn't exist in python 2.4, use...	commit \| commitdiff \| tree
2009-09-26	Diane Trout	Implement a client side config file generator.	commit \| commitdiff \| tree
2009-09-26	Diane Trout	Print library.library_id instead of the flowcell.library_id.	commit \| commitdiff \| tree
2009-09-23	Diane Trout	Return species information as part of the flowcell...	commit \| commitdiff \| tree
2009-09-19	Diane Trout	Put a stub species_json in, as I'd listed it in the...	commit \| commitdiff \| tree
2009-09-19	Diane Trout	Allow grabbing library information via json.	commit \| commitdiff \| tree
2009-09-19	Diane Trout	Add a /config/<fcid>/json url that returns information...	commit \| commitdiff \| tree
2009-09-19	Diane Trout	Django really wanted a 404 template.	commit \| commitdiff \| tree
2009-09-16	Diane Trout	Force addition of HTSUser object if someone is creating...	commit \| commitdiff \| tree
2009-09-16	Diane Trout	Replace some prints with logging.info messages and	commit \| commitdiff \| tree
2009-09-14	Diane Trout	Fix ticket:145 this patch includes the tar.bz2 extension...	commit \| commitdiff \| tree
2009-09-11	Diane Trout	Apparently I should've rendered the emails in plain...	commit \| commitdiff \| tree
2009-09-11	Diane Trout	None is better than a baddly munged string for when...	commit \| commitdiff \| tree
2009-09-10	Diane Trout	Don't crash if there are no lane result summary entries...	commit \| commitdiff \| tree
2009-09-10	Diane Trout	Report if the Summary.htm file is missing the Lane...	commit \| commitdiff \| tree
2009-09-10	Diane Trout	Remove spurious pring debugging statements as they...	commit \| commitdiff \| tree
2009-09-02	Diane Trout	remove spurious debug print statement	commit \| commitdiff \| tree
2009-09-01	Diane Trout	Report who the site managers are for the BCC	commit \| commitdiff \| tree
2009-08-22	Diane Trout	Now adding a user adds the key linking the htsuser...	commit \| commitdiff \| tree
2009-08-20	Diane Trout	Implement a send started email feature.	commit \| commitdiff \| tree
2009-08-20	Diane Trout	Reorder imports in model to make me happy.	commit \| commitdiff \| tree
2009-08-19	Diane Trout	Use hasattr instead of checking for django version...	commit \| commitdiff \| tree
2009-08-19	Diane Trout	Forgot to update one request to request.REQUEST variable...	commit \| commitdiff \| tree
2009-08-19	Diane Trout	Convert stanford/hudson alpha's updStatus to work with...	commit \| commitdiff \| tree
2009-08-18	Diane Trout	Update hudson alpha's eland config file generator to...	commit \| commitdiff \| tree
2009-08-18	Diane Trout	Update eland_config generator to work with the new...	commit \| commitdiff \| tree
2009-08-18	Diane Trout	Update Rami's flowcell report to work with our new...	commit \| commitdiff \| tree
2009-08-18	Diane Trout	Add a custom (inherited) user object named HTSUser...	commit \| commitdiff \| tree
2009-08-18	Diane Trout	Fix code where the python str() function had been overridden...	commit \| commitdiff \| tree
2009-08-12	Diane Trout	Converted Brandon's scripts into a single python script...	commit \| commitdiff \| tree
2009-08-12	Diane Trout	Move Brandon's upgrade script in with all the other...	commit \| commitdiff \| tree
2009-07-23	Diane Trout	ReadPreps can also use the netcopy complete flags which...	commit \| commitdiff \| tree
2009-07-21	Diane Trout	Allow specifying the we're finished sequencing file...	commit \| commitdiff \| tree
2009-07-01	Diane Trout	Add LibraryType option, (this will probably require...	commit \| commitdiff \| tree
2009-07-01	Diane Trout	Change the cluster station default to the current working...	commit \| commitdiff \| tree
2009-06-30	Diane Trout	Allow cellline and conditition to be blank [ticket...	commit \| commitdiff \| tree
2009-06-30	Diane Trout	Provide a dummy eland result lane class if there's...	commit \| commitdiff \| tree
2009-06-23	Diane Trout	The url validation code wasn't working on python2.4	commit \| commitdiff \| tree
2009-06-20	Diane Trout	Send the specific directory that needs to be copied...	commit \| commitdiff \| tree
2009-06-19	Diane Trout	I started using ResultLane, so stop treating it like...	commit \| commitdiff \| tree
2009-06-17	Diane Trout	Add support for extracting data out of Illumina's new...	commit \| commitdiff \| tree
2009-06-17	Diane Trout	Add a hack to add a frontend section if not present	commit \| commitdiff \| tree
2009-06-17	Diane Trout	Loading really old run xml files caused the website...	commit \| commitdiff \| tree
2009-06-17	Diane Trout	Ignore *.py[co~] files to make svn status happier	commit \| commitdiff \| tree
2009-06-17	Diane Trout	Add stub uuid function to make this module import when...	commit \| commitdiff \| tree
2009-06-17	Diane Trout	remove spurious debug print statements	commit \| commitdiff \| tree
2009-06-16	Diane Trout	The error being thrown by benderjab changed slightly.	commit \| commitdiff \| tree
2009-06-16	Diane Trout	Split rsync initialization out of run so we can test	commit \| commitdiff \| tree
2009-06-16	Diane Trout	Fixed a couple of problems.	commit \| commitdiff \| tree
2009-06-16	Diane Trout	Update test copier code for the changes in the copier...	commit \| commitdiff \| tree
2009-06-15	Diane Trout	Allow searching by library name on the experiments...	commit \| commitdiff \| tree
2009-06-10	Diane Trout	Scan more than one rsync repository for directory trees...	commit \| commitdiff \| tree
2009-06-09	Diane Trout	Add code to construct a copy url using a mapping in...	commit \| commitdiff \| tree
2009-06-05	Diane Trout	Pyinotify behaves oddly when the stdio file descriptors...	commit \| commitdiff \| tree
2009-06-01	Diane Trout	Consistently use 'watchdir' instead of 'watch_dir'...	commit \| commitdiff \| tree
2009-05-30	Diane Trout	Watch more than one directory tree for modification.	commit \| commitdiff \| tree
2009-05-30	Diane Trout	Don't print the discovered mount point.	commit \| commitdiff \| tree
2009-05-27	Diane Trout	Add a minimal test case to test a small bit of the...	commit \| commitdiff \| tree
2009-05-11	Diane Trout	More consistently split the flowcell id and status...	commit \| commitdiff \| tree
2009-05-11	Diane Trout	Fix parameter list for base class.	commit \| commitdiff \| tree
2009-05-06	Diane Trout	Update htsworkflow.util.fctracker module to work with...	commit \| commitdiff \| tree
2009-05-05	Diane Trout	Update the django app to report "raw reads" for a sequence...	commit \| commitdiff \| tree
2009-05-05	Diane Trout	Handle lanes that were only sequenced.	commit \| commitdiff \| tree
2009-05-05	Diane Trout	Return NaN, NaN if a mean +/- deviation value was undefined...	commit \| commitdiff \| tree
2009-05-05	Diane Trout	Allow overriding the queued commands environment.	commit \| commitdiff \| tree
2009-05-01	Diane Trout	Add wait_for_ipar option to the spool watcher config...	commit \| commitdiff \| tree
2009-04-30	Diane Trout	Allow mapping library IDs to the library primary key	commit \| commitdiff \| tree
2009-04-24	Diane Trout	add --clean option to runfolder	commit \| commitdiff \| tree
2009-04-24	Diane Trout	Allow picking runfolder variant we should be trying...	commit \| commitdiff \| tree
2009-04-08	Diane Trout	Stop assuming that library_id == pk.	commit \| commitdiff \| tree
2009-04-04	Diane Trout	Don't crash if we can't find the flowcell run xml file	commit \| commitdiff \| tree
2009-04-04	Diane Trout	Display the affiliations on the public library detail...	commit \| commitdiff \| tree
2009-04-01	Diane Trout	Show the "Amplified from sample" as the parent library...	commit \| commitdiff \| tree
2009-03-31	Diane Trout	Use the image directory name to detect what type of...	commit \| commitdiff \| tree
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