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allow running ucsc_gather --fastq without specifying an analysis name or model
2011-06-22 Diane Troutallow running ucsc_gather --fastq without specifying...
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2011-06-18 Diane TroutRework ucsc gather to use RDF models for gathering...
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2011-06-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-06-18 Diane TroutInclude the library_id in addition to the RDFa library uri
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2011-06-17 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-06-17 Diane TroutMinor RDFa fixes.
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2011-06-15 Diane TroutStart to move all the RDF namespace definitions into...
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2011-06-15 Diane TroutAdd module to parse UCSC DAF file.
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2011-06-15 Diane TroutMove code to make srf and qseq to fastq condor scripts...
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2011-06-15 Diane TroutSample Test RDFA needed the flowcell id field
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2011-06-15 Diane TroutRemove some uneeded linefeeds
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2011-06-14 Diane TroutFix a template typo
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2011-06-13 Diane TroutSupprose IVC plot table rows if we don't have data...
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2011-06-13 Diane TroutFollow the flowcell link from the library page.
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2011-06-13 Diane TroutThe get_permanent_link function on the flowcell model...
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2011-06-13 Diane TroutRemove some now unnecessary coments and reformat some...
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2011-06-11 Diane Troutpython's 2.6 uuid function doesn't cast to a string...
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2011-06-11 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-06-11 Diane TroutConvert Rami's DataRun feature to something useful...
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2011-06-09 Diane TroutMove test srf files to testdata directory so I can...
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2011-06-09 Diane TroutAdd a method to return the runfolder name.
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2011-05-27 Diane TroutAdd in test code to verify RDF data being added to...
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2011-05-27 Diane TroutTrivial change, add human to common name of "homo sapiens"
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2011-05-26 Diane TroutMerge branch 'add-condition'
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2011-05-25 Diane TroutMake antibody & condition visible.
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2011-05-18 Diane TroutWrite the librdf model database somewhere other than...
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2011-05-16 Diane TroutPretty print the json files to help debugging
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2011-05-16 Diane TroutAllow configuring additional database settings so we...
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2011-05-09 Diane TroutAdd fake settings.py file point to the real htsworkflow...
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2011-05-09 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-05-09 Diane TroutMove default_pm setting to a little more predictable...
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2011-05-09 Diane TroutKeep moving settings around until I can find a place...
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2011-05-09 Diane TroutAdd utility program to help find what exists in georgi...
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2011-05-09 Diane TroutReport missing directory names to help diagnose sequence...
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2011-05-09 Diane TroutValidate fastq files in both phred33 & phred64 versions
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2011-04-06 Diane Troutdjango-nose didn't work with django 1.1, so I went...
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2011-04-05 Diane TroutAdjust django driver script to test the whole package.
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2011-04-05 Diane TroutRevert a bad change. Apparently past me knew what I...
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2011-04-05 Diane Troutremove spurious debugging print
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2011-04-02 Diane TroutRemove spurious debug print statements
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2011-04-02 Diane TroutFix a typo inserted into the template.
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2011-04-02 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-04-02 Diane TroutAdd pages to show information about a particular flowcell.
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2011-03-30 Diane TroutUpdate single vs paired guessing code
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2011-03-09 Diane TroutUpdate spoolwatcher to 0.2 benderjab's logging api
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2011-03-07 Diane TroutMove some common runfolder path management code into...
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2011-03-07 Diane TroutAdd a place for "breadcrumbs" back into the base.html...
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2011-02-26 Diane TroutIgnore emacs backup files for things other than python...
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2011-02-26 Diane TroutSave the overrides to the RDF model.
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2011-02-26 Diane TroutOnly pull web data when its missing from the rdf model.
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2011-02-17 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-02-17 Diane TroutMajor updateds to encode_find for extracting encode...
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2011-02-17 Diane TroutOnly use one name for dates on the page.
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2011-02-17 Diane TroutMinor RDFa cleanups
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2011-02-17 Diane TroutChange default font size to 14pt
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2011-02-17 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-02-17 Diane TroutAdd RDFa data to our library pages.
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2011-02-17 Diane TroutAdd a small comment defining "results_dir"
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2011-02-16 Diane TroutAdd in patterns for Encode Elements submission
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2011-02-15 Diane TroutStarting component to try and figure out what we've...
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2011-02-15 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-02-15 Diane TroutMake plus/minus bigwig filename extension a bit more...
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2011-02-14 Diane TroutAdd in support for generating md5sums for files
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2011-02-07 Diane TroutAdd in a little bit of qseq2fastq testing code. More...
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2011-02-07 Diane TroutAdd documentation about which Phred format we're generating
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2011-02-03 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-02-03 Diane TroutFirst cycle can be 2 digit.
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2011-01-25 Diane TroutFix typo in a function name.
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2011-01-25 Diane TroutAdd in 12x / 18x PCR protocol end points from Lorian
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2011-01-25 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-01-25 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-01-21 Diane TroutUpdate view names as per Cricket for the Jan 21st encode...
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2011-01-21 Diane TroutMerge branch 'master' of gitosis@mus.cacr.caltech.edu...
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2011-01-21 Diane TroutAdd function to ucsc submission tool to make symlink...
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2011-01-12 Diane TroutInclude version.py in source distribution for setup.py
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2011-01-08 Diane TroutAdd validation script
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2011-01-04 Diane TroutRename all the scripts to start with htsw-
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2010-12-21 Diane TroutAdd utility to fix the off-by-3 error in the amplified...
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2010-12-02 Diane TroutMake the inventory login page look a bit nicer.
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2010-12-02 Diane TroutAdjust some whitespace
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2010-12-01 Diane TroutThis mildly adjusts the css to be a bit prettier
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2010-12-01 Diane TroutAdd a new ini-file option to point to the flowcell...
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2010-11-30 Diane TroutAdd config option notification_bcc for always attaching...
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2010-11-17 Diane TroutCache the attributes for each type of fastq file.
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2010-11-16 Diane TroutMap junctions.bed to the Junctions view.
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2010-11-16 Diane TroutAutodetect location of *2fastq scripts
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2010-11-15 Diane TroutDon't count failed flowcells when guessing if a library...
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2010-11-07 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2010-11-07 Diane TroutVery basic non-ExtJS version of the inventory page
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2010-11-07 Diane TroutRemove another ExtJS panel reference.
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2010-11-05 Diane TroutUpdate to the new UCSC DAF file.
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2010-11-03 Diane TroutCreate a class to handle mapping extension to ucsc...
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2010-11-02 Diane TroutTwo lines between functions (trivial change)
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2010-11-01 Diane TroutOnly complane about missing genomes if we _wanted_...
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2010-11-01 Diane TroutCheck for s_${lane}_02_matrix.txt as well as s_${lane...
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2010-10-28 Diane TroutRemove dependency on ExtJS for library & lanes_for...
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2010-10-27 Diane TroutThe WITH_SEQUENCE flag needs to be lower-case "true".
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2010-10-22 Diane TroutReport version number derived from git tag.
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2010-10-19 Diane TroutSet WITH_SEQUENCE as both a per-lane AND global parameter
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2010-10-08 Diane TroutWITH_SEQUENCE is actually a global GERALD option, remove...
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htsworkflow sequencing LIMS software