1 // This file is part of the Mussa source distribution.
2 // http://mussa.caltech.edu/
3 // Contact author: Tristan De Buysscher, tristan@caltech.edu
5 // This program and all associated source code files are Copyright (C) 2005
6 // the California Institute of Technology, Pasadena, CA, 91125 USA. It is
7 // under the GNU Public License; please see the included LICENSE.txt
8 // file for more information, or contact Tristan directly.
11 #include "mussa_gui_seq.hh"
20 set_align_cb(Fl_Widget* widg, void* the_data)
22 menu_align_data_bundle * blah = (menu_align_data_bundle *) the_data;
23 SeqWindow* T= blah->swm_ptr;
24 T->real_set_align_cb(blah->which_align);
29 SeqWindow::real_set_align_cb(int which_align)
36 window_length = a_path[0];
37 cout << window_length << endl;
40 seq_box->align_offsets(which_align);
46 show_align_cb(Fl_Widget* widg, void* the_data)
48 menu_align_data_bundle * blah = (menu_align_data_bundle *) the_data;
49 SeqWindow* T= blah->swm_ptr;
50 T->real_show_align_cb(blah->which_align);
55 SeqWindow::real_show_align_cb(int which_align)
62 seq_box->toggle_align(which_align);
68 toggle_bars_cb(Fl_Button* o, void* v)
70 SeqWindow* T=(SeqWindow*)v;
71 T->real_toggle_bars_cb();
76 SeqWindow::real_toggle_bars_cb()
78 seq_box->toggle_bars();
83 toggle_motifs_cb(Fl_Button* o, void* v)
85 SeqWindow* T=(SeqWindow*)v;
86 T->real_toggle_motifs_cb();
91 SeqWindow::real_toggle_motifs_cb()
93 seq_box->toggle_motifs();
97 // main code, window creation
99 SeqWindow::SeqWindow(int w, int h, const char* title, int sq_num,
100 vector<Sequence> *some_seqs,
101 list<vector<int> > some_paths,
102 vector<int> some_lens,
103 vector<motif> *some_motifs):
104 Fl_Double_Window(w,h,title)
106 menu_align_data_bundle * some_menu_data;
108 int window_length, align_number;
110 ostringstream align_id_ostr;
111 string align_id_string;
112 list<vector<int> >::iterator align_iter;
116 // most of this stuff is here just to pass to SeqView object
117 // some is needed to setup the window menus
121 seq_lens = some_lens;
122 the_motifs = some_motifs;
129 // make the menu that allows alignment selection
130 choose_align_menu = new Fl_Menu_Button(5, 2, 180, 30, "Choose Alignment");
131 choose_align_menu->color(FL_WHITE,FL_BLUE);
132 choose_align_menu->box(FL_BORDER_BOX);
133 choose_align_menu->clear();
135 // make the menu that allows alignment selection
136 show_align_menu = new Fl_Menu_Button(190, 2, 180, 30, "Show Alignment");
137 show_align_menu->color(FL_WHITE,FL_BLUE);
138 show_align_menu->box(FL_BORDER_BOX);
139 show_align_menu->clear();
142 // adds menu items for each path
143 align_iter = P.begin();
145 while(align_iter != P.end())
147 some_menu_data = new menu_align_data_bundle;
148 some_menu_data->swm_ptr = this;
149 some_menu_data->which_align = align_number;
150 align_id_ostr << (*align_iter)[0] << ": ";
151 for(i = 1; i <= seq_num; i++)
152 align_id_ostr << (*align_iter)[i] << ", ";
153 align_id_string = align_id_ostr.str();
154 choose_align_menu->add((const char*)align_id_string.c_str(), 0,
155 (Fl_Callback *) set_align_cb,
156 (void*) some_menu_data);
157 show_align_menu->add((const char*)align_id_string.c_str(), 0,
158 (Fl_Callback *) show_align_cb,
159 (void*) some_menu_data, FL_MENU_TOGGLE|FL_MENU_VALUE);
161 align_id_ostr.str("");
167 show_align_menu->add("f&ee");
168 show_align_menu->add("f&ie");
169 show_align_menu->add("f&oe");
170 show_align_menu->add("f&um");
173 Fl_Button *test_but = new Fl_Button(375, 2, 150, 30, "Toggle Motifs");
174 test_but->color(FL_WHITE,FL_BLUE);
175 test_but->box(FL_BORDER_BOX);
176 test_but->callback((Fl_Callback*) toggle_motifs_cb, this);
178 toggle_bars = new Fl_Button(530, 2, 150, 30, "Toggle 10bp bars");
179 toggle_bars->color(FL_WHITE,FL_BLUE);
180 toggle_bars->box(FL_BORDER_BOX);
181 toggle_bars->callback((Fl_Callback*) toggle_bars_cb, this);
184 // make the view of the sequence
185 seq_box = new SeqView(0, 34, w, h-34);
186 seq_box->setup(ana_name, seq_num, S, P, seq_lens, the_motifs);
187 //real_set_align_cb(2);
190 Fl::visual(FL_DOUBLE|FL_INDEX);
197 some_menu_data = new menu_align_data_bundle;
198 some_menu_data->swm_ptr = this;
199 some_menu_data->which_align = 2;
200 choose_align_menu->add("f&ie", FL_ALT+'i', (Fl_Callback *) set_align_cb,
201 (void*) some_menu_data);
203 some_menu_data = new menu_align_data_bundle;
204 some_menu_data->swm_ptr = this;
205 some_menu_data->which_align = 3;
206 choose_align_menu->add("f&oe", FL_ALT+'o', (Fl_Callback *) set_align_cb,
207 (void*) some_menu_data);
209 some_menu_data = new menu_align_data_bundle;
210 some_menu_data->swm_ptr = this;
211 some_menu_data->which_align = 4;
212 choose_align_menu->add("f&um", FL_ALT+'u', (Fl_Callback *) set_align_cb,
213 (void*) some_menu_data);