woldlab.caltech.edu Git - mussa.git/history

2007-06-21	Diane Trout	test annotating a sequence with fasta records in a...	blob \| commitdiff \| raw
2007-04-18	Brandon King	Load N sequences in Mussa::load	blob \| commitdiff \| raw \| diff to current
2007-04-11	Diane Trout	show where the Ns are	blob \| commitdiff \| raw \| diff to current
2007-04-09	Diane Trout	add function for marking 'N' regions	blob \| commitdiff \| raw \| diff to current
2007-04-06	Diane Trout	remove annot class in favor of SeqSpan	blob \| commitdiff \| raw \| diff to current
2007-04-03	Diane Trout	fix problems with motif changes not showing up in seque...	blob \| commitdiff \| raw \| diff to current
2007-03-30	Diane Trout	incorporate drawable and annotations	blob \| commitdiff \| raw \| diff to current
2007-03-24	Diane Trout	move strand into seqspan	blob \| commitdiff \| raw \| diff to current
2007-03-21	Diane Trout	Move alphabet type into SeqString	blob \| commitdiff \| raw \| diff to current
2007-03-20	Diane Trout	Store Sequence sequence location in a shared_ptr class	blob \| commitdiff \| raw \| diff to current
2007-01-04	Diane Trout	paircomp used the string find_first_not_of	blob \| commitdiff \| raw \| diff to current
2006-10-19	Diane Trout	Sequence::rev_comp works on subsequences	blob \| commitdiff \| raw \| diff to current
2006-10-11	Diane Trout	throw errors when spirit parsing fails	blob \| commitdiff \| raw \| diff to current
2006-10-10	Diane Trout	implement alphabet for sequence	blob \| commitdiff \| raw \| diff to current
2006-09-15	Diane Trout	keep track of a subsequences parent	blob \| commitdiff \| raw \| diff to current
2006-09-15	Diane Trout	report our "start/stop" location on a subsequence	blob \| commitdiff \| raw \| diff to current
2006-09-15	Diane Trout	use an enum instead of a bool for strandedness	blob \| commitdiff \| raw \| diff to current
2006-09-12	Diane Trout	add seq_forward	blob \| commitdiff \| raw \| diff to current
2006-09-07	Diane Trout	remove commented out string conversion	blob \| commitdiff \| raw \| diff to current
2006-09-07	Diane Trout	Figured out how to serialize a shared_ptr<string>	blob \| commitdiff \| raw \| diff to current
2006-09-07	Diane Trout	go back to using const char * in seqcomp	blob \| commitdiff \| raw \| diff to current
2006-08-30	Diane Trout	use shared_ptr to store the sequence string	blob \| commitdiff \| raw \| diff to current
2006-08-29	Diane Trout	put basepair alphabets into the Sequence class	blob \| commitdiff \| raw \| diff to current
2006-08-29	Diane Trout	go back to sequence being its own class	blob \| commitdiff \| raw \| diff to current
2006-08-24	Diane Trout	update sequence serialization to support the xml archive	blob \| commitdiff \| raw \| diff to current
2006-08-22	Diane Trout	catch the other spurious class decoration	blob \| commitdiff \| raw \| diff to current
2006-08-22	Diane Trout	remove unnecessary class member decoration	blob \| commitdiff \| raw \| diff to current
2006-08-10	Diane Trout	Let the annotation parser skip html tags	blob \| commitdiff \| raw \| diff to current
2006-08-09	Diane Trout	Implement serialize for sequence	blob \| commitdiff \| raw \| diff to current
2006-07-27	Diane Trout	add annot and motif classes to python interface	blob \| commitdiff \| raw \| diff to current
2006-07-01	Diane Trout	Implement UI for subanalysis mode	blob \| commitdiff \| raw \| diff to current
2006-06-30	Diane Trout	fix boost::python sequence interface	blob \| commitdiff \| raw \| diff to current
2006-06-30	Diane Trout	store motifs as sequences instead of strings	blob \| commitdiff \| raw \| diff to current
2006-06-29	Diane Trout	allow specifying a name for a sequence	blob \| commitdiff \| raw \| diff to current
2006-06-21	Diane Trout	More progress toward subanalysis	blob \| commitdiff \| raw \| diff to current
2006-06-17	Diane Trout	make Sequence a subclass of std::string	blob \| commitdiff \| raw \| diff to current
2006-06-16	Diane Trout	ticket:104 fix some pointer problems with MussaAlignedW...	blob \| commitdiff \| raw \| diff to current
2006-06-10	Diane Trout	partial implementation of sequence track copy	blob \| commitdiff \| raw \| diff to current
2006-06-09	Diane Trout	More robust eol handling for Sequence::load_fasta	blob \| commitdiff \| raw \| diff to current
2006-06-08	Diane Trout	improve fasta parsing	blob \| commitdiff \| raw \| diff to current
2006-05-18	Diane Trout	expose more of the sequence class to python	blob \| commitdiff \| raw \| diff to current
2006-05-17	Diane Trout	try to read fasta blocks in the annotation file	blob \| commitdiff \| raw \| diff to current
2006-05-17	Diane Trout	use spirit parser for reading annot file	blob \| commitdiff \| raw \| diff to current
2006-05-16	Diane Trout	add annotations by sequence string	blob \| commitdiff \| raw \| diff to current
2006-04-07	Diane Trout	switch to using boost::filesystem	blob \| commitdiff \| raw \| diff to current
2006-03-23	Diane Trout	better sidebar rendering	blob \| commitdiff \| raw \| diff to current
2006-03-19	Diane Trout	draw alignment lines	blob \| commitdiff \| raw \| diff to current
2006-03-15	Diane Trout	make the path view independent of type of connection	blob \| commitdiff \| raw \| diff to current
2006-03-14	Diane Trout	load and display a motif list	blob \| commitdiff \| raw \| diff to current
2006-03-14	Diane Trout	attach motifs to a sequence object	blob \| commitdiff \| raw \| diff to current
2006-03-12	Diane Trout	There can be only one (filename convention)	blob \| commitdiff \| raw \| diff to current

MUSSA multi-species alignment tool

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