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make the mupa parser more robust
2007-08-03 Diane Troutmake the mupa parser more robust
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2007-08-03 Diane Troutadd threshold/window flag getter/setters
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2007-08-03 Diane Troutminor updates to mussa setup widget
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2007-08-03 Diane Troutupdate to 4.2.3
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2007-06-29 Diane TroutUse the right return type
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2007-01-05 Diane Trouttest paircomp::NwayComparison
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2007-06-23 Diane TroutCatch annotation sequences that don't end with newline
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2007-06-21 Diane Trouttest annotating a sequence with fasta records in a...
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2007-05-22 Diane Trouttry to update for boost 1.34
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2007-05-02 Diane Troutfactor out viewport to display scaling functions
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2007-04-26 Diane Troutsimplify zoom code
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2007-04-26 Diane Troutaccept and ignore events
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2007-04-21 Diane Troutdont draw sequence box when we can see sequence text
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2007-04-19 Diane Troutimprove mupa comment character parsing
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2007-04-19 Diane Troutmake mupa file loading eol-style insensitive
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2007-04-16 Diane Troutescape clears a sequence browser selection
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2007-04-14 Diane Troutdraw a grey background to a track
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2007-04-14 Diane Troutstore default colors
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2007-04-13 Diane Troutset annotation draw function by type
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2007-04-13 Diane TroutMark real sequence instead of Ns
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2007-04-11 Diane Troutmake the N whiteout a bit bigger
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2007-04-11 Diane Troutshow where the Ns are
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2007-04-09 Diane Troutremove unncessary class qualifier
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2007-04-09 Diane Troutadd function for marking 'N' regions
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2007-04-09 Diane Troutadd draw function pointer to drawable
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2007-04-06 Diane Troutremove annot class in favor of SeqSpan
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2007-04-06 Diane TroutAdd getdefault to Annotations
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2007-04-04 Diane Troutfix uninitialized pointer
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2007-04-03 Diane Troutfix problems with motif changes not showing up in sequencebr...
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2007-04-03 Diane Troutdelete default layout in MotifEditor
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2007-04-02 Diane Trouttest motif editor pointers
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2007-03-31 Diane Trouttest motif editor
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2007-03-31 Diane Trouttest MotifModel and MotifElement
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2007-03-30 Diane Troutseperate qt unittests into subdirectories
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2007-03-30 Diane Troutincorporate drawable and annotations
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2007-03-30 Diane Troutcreate class to hold drawing information
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2007-03-30 Diane Troutcreate a metadata holding class
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2007-03-27 Diane TroutHandle subseq when the parent is on the minus strand
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2007-03-24 Diane Troutmove strand into seqspan
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2007-03-21 Diane TroutMissed part of "Store Sequence sequence location in...
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2007-03-21 Diane TroutMove alphabet type into SeqString
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2007-03-20 Diane TroutStore Sequence sequence location in a shared_ptr class
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2007-03-08 Diane Troutmake sure paths continue to start with a /
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2007-03-08 Diane Troutadd a useful comment
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2007-02-26 Diane Troutmupa for test case
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2007-02-23 Diane Troutcmake was trying to link -loptimized
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2007-02-21 Diane Troutkeep motifs after closing window
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2007-02-20 Diane Troutmore error messages for loading an annotation.
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2007-02-15 Diane Troutignore paircomp
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2007-02-13 Diane TroutIsFileValidator doesn't use signal/slots
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2007-02-03 Diane Troutdetect 64bit processors and add -fPIC
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2007-01-05 Diane Troutadd some newlines at the end of some of our files
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2007-01-04 Diane Troutconditionally build the paircomp tests
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2007-01-04 Diane Troutpaircomp used the string find_first_not_of
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2007-01-04 Diane Troutsplit unittests into seperate executables
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2006-12-21 Diane Troutbuild paircomp if available
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2006-12-14 Diane Troutlen(mussa.paths()) should equal the number of found...
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2006-12-13 Diane Troutbe resistent to not creating the browser
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2006-12-13 Diane Troutmake mussawindow initialize icons
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2006-12-13 Diane Trouttry to reduce number of moveToThread warnings
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2006-12-12 Diane Troutfix infinite loop for absolute pathnames
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2006-12-07 Diane Troutprovide get_py and get_py_ptr
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2006-12-07 Diane Troutcut down on unnecessary linking to the python library
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2006-12-07 Diane TroutAllocating objects in the constructor causes problems
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2006-12-05 Diane Troutmake compiled in python extension initialization more...
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2006-12-05 Diane Troutdirectly build the python extension modules
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2006-12-05 Diane Troutprovide python interpreter for mussa qui via a seperate...
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2006-11-30 Diane Troutallow adding and viewing sequences to an analysis from...
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2006-11-29 Diane Troutadd python interface to seqcomp
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2006-11-22 Diane TroutFinish off setting sequence offset user interface
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2006-11-21 Diane Troutquick option to show sequence properties window
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2006-11-21 Diane Troutrename ok/cancel to okButton/cancelButton
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2006-11-21 Diane Troutfix bad #ifdef names
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2006-11-17 Diane Troutmore fs::native for user supplied paths
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2006-11-02 Diane Troutinclude sequence property editor source files
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2006-11-01 Diane Troutallow copying files into a dmg
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2006-10-31 Diane Troutupdate CMakeLists.txt to build new SequencePropertiesWindow
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2006-10-31 Diane Troutupdate osxdist for qt4.2.1
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2006-10-30 Diane Troutmove SubanalysisWindow code to a subdirectory
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2006-10-30 Diane Troutinclude filename in unparsable annotation error message
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2006-10-30 Diane Troutreport filename for invalid fasta files
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2006-10-28 Diane Troutdon't use staticly allocated widgets
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2006-10-28 Diane Troutadd include QCloseEvent to MussaWindow.hpp
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2006-10-28 Diane Troutallow verticle scrollbar for sequence browser widget
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2006-10-28 Diane Troutcompute the correct starting window size
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2006-10-27 Diane Troutuse pointers for zoom spinbox in ZoomWidget
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2006-10-27 Diane TroutUse Qt4.2 openUrl to show manual
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2006-10-27 Diane Troutimplement set window state
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2006-10-26 Diane Troutinclude icon extension for os x bundle information
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2006-10-26 Diane Troutadd copy sequence as string option
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2006-10-26 Diane Troutdisplay number of basepairs copied
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2006-10-24 Diane Trouttagged release_1.0_rc3
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2006-10-24 Diane Troutcall set_soft_threshold after subanalysis
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2006-10-23 Diane TroutEnable Qt4 tests
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2006-10-20 Diane Troutadd nl to end of 3 files
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2006-10-20 Diane Troutavoid multiple calls to setSoftThreshold
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2006-10-20 Diane Troutcopy motifs to a new subanalysis
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2006-10-19 Diane Troutfix motif loader under release build
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2006-10-19 Diane TroutSequence::rev_comp works on subsequences
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2006-10-18 Diane Troutadd to_upper_case to some sequence unittests
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MUSSA multi-species alignment tool