woldlab.caltech.edu Git - mussa.git/shortlog

2006-10-18	Brandon King	Mussa Manual: Multiple Mussa Windows	commit \| commitdiff \| tree \| snapshot
2006-10-18	Brandon King	Mussa Manual: save on close & save motif default behavior	commit \| commitdiff \| tree \| snapshot
2006-10-17	Diane Trout	be more forging of user provided file names	commit \| commitdiff \| tree \| snapshot
2006-10-17	Diane Trout	remove old code	commit \| commitdiff \| tree \| snapshot
2006-10-17	Diane Trout	ignore eclipse settings	commit \| commitdiff \| tree \| snapshot
2006-10-17	Diane Trout	add a manually updated version number.	commit \| commitdiff \| tree \| snapshot
2006-10-17	Diane Trout	test_mussa_python also had an unecesary QtOpenGL librar...	commit \| commitdiff \| tree \| snapshot
2006-10-17	Diane Trout	attempt to make buildnum.py generate a useful header	commit \| commitdiff \| tree \| snapshot
2006-10-17	Diane Trout	motif save should have a default extension.	commit \| commitdiff \| tree \| snapshot
2006-10-17	Diane Trout	don't like QTOPENGL to python module	commit \| commitdiff \| tree \| snapshot
2006-10-17	Diane Trout	changing motifs should make the analysis dirty	commit \| commitdiff \| tree \| snapshot
2006-10-17	Brandon King	Mussa Manual: updated motif dialog section.	commit \| commitdiff \| tree \| snapshot
2006-10-17	Diane Trout	always add a blank motif	commit \| commitdiff \| tree \| snapshot
2006-10-17	Brandon King	Mussa Manual: Saving section	commit \| commitdiff \| tree \| snapshot
2006-10-17	Brandon King	Mussa Manual: create/load analysis section updated	commit \| commitdiff \| tree \| snapshot
2006-10-17	Diane Trout	more python interface to Sequence	commit \| commitdiff \| tree \| snapshot
2006-10-17	Diane Trout	force loaded sequence to uppercase	commit \| commitdiff \| tree \| snapshot
2006-10-17	Diane Trout	validate app bundle before shipping	commit \| commitdiff \| tree \| snapshot
2006-10-17	Diane Trout	don't link against X11 on OS X	commit \| commitdiff \| tree \| snapshot
2006-10-16	Brandon King	Mussa manual: Overview section update	commit \| commitdiff \| tree \| snapshot
2006-10-16	Brandon King	Mussa Manual: Link to example data in UCSC genome brows...	commit \| commitdiff \| tree \| snapshot
2006-10-14	Brandon King	Mussa Manual: Save to image	commit \| commitdiff \| tree \| snapshot
2006-10-14	Diane Trout	don't seqcomp sequences that are too small	commit \| commitdiff \| tree \| snapshot
2006-10-14	Brandon King	Fix for ticket:160	commit \| commitdiff \| tree \| snapshot
2006-10-14	Brandon King	Mussa Manual: motif list file masks	commit \| commitdiff \| tree \| snapshot
2006-10-14	Diane Trout	add operator< to ConservedPath	commit \| commitdiff \| tree \| snapshot
2006-10-13	Brandon King	Build number python script	commit \| commitdiff \| tree \| snapshot
2006-10-13	Brandon King	Save to image fix (ticket:96)	commit \| commitdiff \| tree \| snapshot
2006-10-13	Diane Trout	save motifs with the analysis	commit \| commitdiff \| tree \| snapshot
2006-10-13	Diane Trout	pass default_dir around	commit \| commitdiff \| tree \| snapshot
2006-10-13	Diane Trout	change default_dir to a QDir	commit \| commitdiff \| tree \| snapshot
2006-10-12	Diane Trout	cleanup image save dialog aesthetics	commit \| commitdiff \| tree \| snapshot
2006-10-12	Diane Trout	tabs are of the devil	commit \| commitdiff \| tree \| snapshot
2006-10-12	Brandon King	CMakeLists.txt: Added extra QT_LIBS depend to fix Qt...	commit \| commitdiff \| tree \| snapshot
2006-10-12	Diane Trout	Fix initialization of QtAssistant	commit \| commitdiff \| tree \| snapshot
2006-10-12	Diane Trout	better glyph offset computation	commit \| commitdiff \| tree \| snapshot
2006-10-12	Brandon King	Windows installer script: updated to work in makelib...	commit \| commitdiff \| tree \| snapshot
2006-10-12	Diane Trout	does createLocalAlignment work for a 3 way?	commit \| commitdiff \| tree \| snapshot
2006-10-12	Diane Trout	add implementation for save motif menu item	commit \| commitdiff \| tree \| snapshot
2006-10-12	Diane Trout	Make help a bit more reliable	commit \| commitdiff \| tree \| snapshot
2006-10-11	Diane Trout	lookup python code with c++	commit \| commitdiff \| tree \| snapshot
2006-10-11	Diane Trout	Validate motif input	commit \| commitdiff \| tree \| snapshot
2006-10-11	Diane Trout	add Mussa::save_motif()	commit \| commitdiff \| tree \| snapshot
2006-10-11	Diane Trout	throw errors when spirit parsing fails	commit \| commitdiff \| tree \| snapshot
2006-10-11	Diane Trout	use spinboxes for the setup analysis dialog	commit \| commitdiff \| tree \| snapshot
2006-10-11	Diane Trout	a title of path("/my/silly/path") doesn't work on windows	commit \| commitdiff \| tree \| snapshot
2006-10-11	Diane Trout	use lines if a quad would be smaller than a pixel	commit \| commitdiff \| tree \| snapshot
2006-10-10	Diane Trout	initialize the motif_editor with analysis motifs	commit \| commitdiff \| tree \| snapshot
2006-10-10	Diane Trout	implement alphabet for sequence	commit \| commitdiff \| tree \| snapshot
2006-10-05	Diane Trout	length 1 segments should be drawn as lines	commit \| commitdiff \| tree \| snapshot
2006-10-05	Diane Trout	draw link lines with a width	commit \| commitdiff \| tree \| snapshot
2006-10-04	Diane Trout	add --motifs	commit \| commitdiff \| tree \| snapshot
2006-10-04	Diane Trout	trigger motif update from loadMotifList	commit \| commitdiff \| tree \| snapshot
2006-10-04	Diane Trout	fixes for Mussa::load_motif	commit \| commitdiff \| tree \| snapshot
2006-10-04	Diane Trout	colors should default to being visible	commit \| commitdiff \| tree \| snapshot
2006-10-03	Diane Trout	Add window titles	commit \| commitdiff \| tree \| snapshot
2006-06-15	Diane Trout	fix wrong parent for scrollable_browser	commit \| commitdiff \| tree \| snapshot
2006-10-03	Diane Trout	Add ReadOnly ThresholdWidget to MussaAlignedWindow	commit \| commitdiff \| tree \| snapshot
2006-10-03	Diane Trout	Use pointers in ThresholdWidget	commit \| commitdiff \| tree \| snapshot
2006-10-03	Diane Trout	Allow MussaAlignedWindows to create subanalyses	commit \| commitdiff \| tree \| snapshot
2006-10-03	Diane Trout	Death to stupid mussa pointers	commit \| commitdiff \| tree \| snapshot
2006-10-02	Diane Trout	add updateTitle	commit \| commitdiff \| tree \| snapshot
2006-10-02	Diane Trout	Make MussaWindow UI objects pointers	commit \| commitdiff \| tree \| snapshot
2006-09-29	Diane Trout	better motif editor	commit \| commitdiff \| tree \| snapshot
2006-09-26	Brandon King	Tool for inserting changelog into rst documents (i...	commit \| commitdiff \| tree \| snapshot
2006-09-25	Brandon King	Mussagl Manual: Status Section	commit \| commitdiff \| tree \| snapshot
2006-09-22	Brandon King	Win32 SaveAs Patch	commit \| commitdiff \| tree \| snapshot
2006-09-21	Diane Trout	If we don't need any python link libraries don't produc...	commit \| commitdiff \| tree \| snapshot
2006-09-21	Brandon King	Mussagl Manual: Spelling and Grammar Fixes	commit \| commitdiff \| tree \| snapshot
2006-09-19	Diane Trout	catch possible segfault with get_sequence()	commit \| commitdiff \| tree \| snapshot
2006-09-18	Diane Trout	need a cassert	commit \| commitdiff \| tree \| snapshot
2006-09-18	Diane Trout	Remember to include Platform to get PYTHON_LINK_LIBARIES	commit \| commitdiff \| tree \| snapshot
2006-09-18	Diane Trout	ask python what libraries we need to link with	commit \| commitdiff \| tree \| snapshot
2006-09-16	Diane Trout	Load saved analysis can open new windows	commit \| commitdiff \| tree \| snapshot
2006-09-15	Diane Trout	if you need to do a save as, you really don't need...	commit \| commitdiff \| tree \| snapshot
2006-09-15	Diane Trout	remember the last directory we were did something in	commit \| commitdiff \| tree \| snapshot
2006-09-15	Diane Trout	remove reporting the current path from the about box	commit \| commitdiff \| tree \| snapshot
2006-09-15	Diane Trout	use the loaded analysis path as the default save path	commit \| commitdiff \| tree \| snapshot
2006-09-15	Diane Trout	always save	commit \| commitdiff \| tree \| snapshot
2006-09-15	Diane Trout	keep track of a subsequences parent	commit \| commitdiff \| tree \| snapshot
2006-09-15	Diane Trout	report our "start/stop" location on a subsequence	commit \| commitdiff \| tree \| snapshot
2006-09-15	Diane Trout	use an enum instead of a bool for strandedness	commit \| commitdiff \| tree \| snapshot
2006-09-15	Diane Trout	make our Color class serializable	commit \| commitdiff \| tree \| snapshot
2006-09-14	Diane Trout	do a better job of erasing the browser sidebars	commit \| commitdiff \| tree \| snapshot
2006-09-14	Diane Trout	make sure we show the start of our sequence name	commit \| commitdiff \| tree \| snapshot
2006-09-14	Diane Trout	Implement an optional name in the motif parser	commit \| commitdiff \| tree \| snapshot
2006-09-13	Brandon King	Mussa Manual: Todo comments	commit \| commitdiff \| tree \| snapshot
2006-09-13	Diane Trout	MussaSetupDialog remembers previous load directory	commit \| commitdiff \| tree \| snapshot
2006-09-13	Diane Trout	default saveAnalysisAs to users home directory	commit \| commitdiff \| tree \| snapshot
2006-09-12	Diane Trout	warn the user if we're going to replace an analysis	commit \| commitdiff \| tree \| snapshot
2006-09-12	Diane Trout	implement "typical" save and close conventions.	commit \| commitdiff \| tree \| snapshot
2006-09-12	Diane Trout	track where our analysis is saved and if the analysis...	commit \| commitdiff \| tree \| snapshot
2006-09-12	Diane Trout	implement analysis save as dialog	commit \| commitdiff \| tree \| snapshot
2006-09-12	Diane Trout	add seq_forward	commit \| commitdiff \| tree \| snapshot
2006-09-09	Diane Trout	make really sure load_mupa has a file to parse.	commit \| commitdiff \| tree \| snapshot
2006-09-08	Diane Trout	subsequences now use offsets into the shared_ptr seq_string	commit \| commitdiff \| tree \| snapshot
2006-09-08	Diane Trout	catch a few more potential unchecked shared_ptr derefer...	commit \| commitdiff \| tree \| snapshot
2006-09-07	Diane Trout	remove commented out string conversion	commit \| commitdiff \| tree \| snapshot
2006-09-07	Diane Trout	Figured out how to serialize a shared_ptr<string>	commit \| commitdiff \| tree \| snapshot
2006-09-07	Diane Trout	go back to using const char * in seqcomp	commit \| commitdiff \| tree \| snapshot
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