woldlab.caltech.edu Git - mussa.git/shortlog

2006-06-12	Brandon King	Manual: UCSC Genome Browser screenshot pack	commit \| commitdiff \| tree \| snapshot
2006-06-12	Brandon King	alg/glseqbrowser.cpp:127: error: jump to case label	commit \| commitdiff \| tree \| snapshot
2006-06-12	Diane Trout	remove a useless debugging message	commit \| commitdiff \| tree \| snapshot
2006-06-12	Diane Trout	Actually copy our selected sequence to the clipboard	commit \| commitdiff \| tree \| snapshot
2006-06-10	Diane Trout	partial implementation of sequence track copy	commit \| commitdiff \| tree \| snapshot
2006-06-09	Diane Trout	More robust eol handling for Sequence::load_fasta	commit \| commitdiff \| tree \| snapshot
2006-06-08	Diane Trout	improve fasta parsing	commit \| commitdiff \| tree \| snapshot
2006-06-08	Diane Trout	minor ui label tweaks	commit \| commitdiff \| tree \| snapshot
2006-06-08	Diane Trout	minor improvements to python embedding code	commit \| commitdiff \| tree \| snapshot
2006-06-08	Diane Trout	Report error when sequence couldn't be loaded	commit \| commitdiff \| tree \| snapshot
2006-06-08	Diane Trout	Turn on more doxygen features	commit \| commitdiff \| tree \| snapshot
2006-06-07	Brandon King	Manual: Progress towards retrieval data for mussa section	commit \| commitdiff \| tree \| snapshot
2006-06-07	Brandon King	Manual Image Pack: UCSC Genome Broswer data retrieval...	commit \| commitdiff \| tree \| snapshot
2006-06-06	Diane Trout	keep track of how far through a seqcomp we've gotten	commit \| commitdiff \| tree \| snapshot
2006-06-03	Diane Trout	use Qt Signals & Slots for progress tracking	commit \| commitdiff \| tree \| snapshot
2006-06-02	Brandon King	Warning dialog upon Mussa Manual (QAssistant) error.	commit \| commitdiff \| tree \| snapshot
2006-05-27	Diane Trout	add callback for tracking analysis progress	commit \| commitdiff \| tree \| snapshot
2006-05-27	Diane Trout	rename [gset_soft_thres to [gs]et_soft_threshold]	commit \| commitdiff \| tree \| snapshot
2006-05-27	Diane Trout	configure cmake to include support for QtAssistant	commit \| commitdiff \| tree \| snapshot
2006-05-26	Brandon King	Variable declared locally elsewere... not needed.	commit \| commitdiff \| tree \| snapshot
2006-05-26	Brandon King	Mussagl Manual QAssistant Profile	commit \| commitdiff \| tree \| snapshot
2006-05-26	Brandon King	Mussagl Manual QAssistant Patch	commit \| commitdiff \| tree \| snapshot
2006-05-25	Diane Trout	let the keyboard reasonably control the browser window	commit \| commitdiff \| tree \| snapshot
2006-05-25	Diane Trout	add some documentation for glseqbrowser::viewport*	commit \| commitdiff \| tree \| snapshot
2006-05-25	Diane Trout	combine a declaration and assignment	commit \| commitdiff \| tree \| snapshot
2006-05-24	Diane Trout	set all the QAction pointers to 0	commit \| commitdiff \| tree \| snapshot
2006-05-23	Brandon King	Manual: View mussa alignment section + minor fixes	commit \| commitdiff \| tree \| snapshot
2006-05-23	Brandon King	Updated Mussagl launched screenshot.	commit \| commitdiff \| tree \| snapshot
2006-05-23	Brandon King	Manual: Spelling patch	commit \| commitdiff \| tree \| snapshot
2006-05-23	Brandon King	Screenshot image pack (for manual)	commit \| commitdiff \| tree \| snapshot
2006-05-23	Brandon King	Conservation tracks + IUPAC Neucleotide Table	commit \| commitdiff \| tree \| snapshot
2006-05-23	Diane Trout	rename ExtendedConservedPath for the old fltk code	commit \| commitdiff \| tree \| snapshot
2006-05-22	Diane Trout	we should be defaulting to qt 4.1.2	commit \| commitdiff \| tree \| snapshot
2006-05-22	Diane Trout	make linking python optional	commit \| commitdiff \| tree \| snapshot
2006-05-20	Diane Trout	turn color back on	commit \| commitdiff \| tree \| snapshot
2006-05-20	Diane Trout	ticket:62 fix local alignment	commit \| commitdiff \| tree \| snapshot
2006-05-20	Diane Trout	specify what version of cmake is required	commit \| commitdiff \| tree \| snapshot
2006-05-18	Brandon King	Manual: Motif/Annotation documentation	commit \| commitdiff \| tree \| snapshot
2006-05-18	Brandon King	Load Motif List png	commit \| commitdiff \| tree \| snapshot
2006-05-18	Brandon King	New version of mussagl, updated screenshot.	commit \| commitdiff \| tree \| snapshot
2006-05-18	Brandon King	Manual: Main Window section added	commit \| commitdiff \| tree \| snapshot
2006-05-18	Brandon King	Screenshots for next patch of the manual.	commit \| commitdiff \| tree \| snapshot
2006-05-17	Brandon King	Updated manual	commit \| commitdiff \| tree \| snapshot
2006-05-18	Diane Trout	rename the python extension to _mussa.so	commit \| commitdiff \| tree \| snapshot
2006-05-18	Diane Trout	expose more of the sequence class to python	commit \| commitdiff \| tree \| snapshot
2006-05-17	Diane Trout	finish implementing annotation by sequence	commit \| commitdiff \| tree \| snapshot
2006-05-17	Diane Trout	switch to a character based spirit parser	commit \| commitdiff \| tree \| snapshot
2006-05-17	Diane Trout	try to read fasta blocks in the annotation file	commit \| commitdiff \| tree \| snapshot
2006-05-17	Diane Trout	use spirit parser for reading annot file	commit \| commitdiff \| tree \| snapshot
2006-05-16	Diane Trout	add annotations by sequence string	commit \| commitdiff \| tree \| snapshot
2006-05-11	Diane Trout	try to make setup.py multiplatform	commit \| commitdiff \| tree \| snapshot
2006-05-11	Diane Trout	minor tweaks for building mussa under setup.py	commit \| commitdiff \| tree \| snapshot
2006-05-11	Diane Trout	super simple mussa gui driver	commit \| commitdiff \| tree \| snapshot
2006-05-11	Diane Trout	build all of mussagl as a python extension	commit \| commitdiff \| tree \| snapshot
2006-05-10	Diane Trout	lets try letting python build mussa	commit \| commitdiff \| tree \| snapshot
2006-05-10	Diane Trout	increase the use of python in mussa	commit \| commitdiff \| tree \| snapshot
2006-05-04	Diane Trout	allow saving aligned window browser to image	commit \| commitdiff \| tree \| snapshot
2006-05-04	Diane Trout	show the name of the analysis loaded	commit \| commitdiff \| tree \| snapshot
2006-05-04	Diane Trout	allow opening multiple MussaWindows	commit \| commitdiff \| tree \| snapshot
2006-04-19	Diane Trout	win32 paths need some conversion	commit \| commitdiff \| tree \| snapshot
2006-04-18	Diane Trout	try to get mussagl to build on win32	commit \| commitdiff \| tree \| snapshot
2006-04-18	Diane Trout	implement commandline arguments for makedmg	commit \| commitdiff \| tree \| snapshot
2006-04-13	Diane Trout	the fasta error message should include the filename	commit \| commitdiff \| tree \| snapshot
2006-04-13	Diane Trout	fix ticket:83 throw an error when we don't have a fasta...	commit \| commitdiff \| tree \| snapshot
2006-04-13	Diane Trout	create an options structure to indicate if we need...	commit \| commitdiff \| tree \| snapshot
2006-04-12	Diane Trout	ticket:85 fix, extend code crashes with 1 path	commit \| commitdiff \| tree \| snapshot
2006-04-12	Diane Trout	use a custom target for python extension	commit \| commitdiff \| tree \| snapshot
2006-04-12	Diane Trout	record cmake commands to deal with some dependency...	commit \| commitdiff \| tree \| snapshot
2006-04-12	Diane Trout	default to building a debug version	commit \| commitdiff \| tree \| snapshot
2006-04-12	Diane Trout	put qt gui launching code into a function	commit \| commitdiff \| tree \| snapshot
2006-04-12	Diane Trout	AMD64 needs -fPIC for mussa_core	commit \| commitdiff \| tree \| snapshot
2006-04-12	Diane Trout	put spaces instead of <TAB> on gui/module.mk	commit \| commitdiff \| tree \| snapshot
2006-04-12	Diane Trout	ln -s is not that reliable	commit \| commitdiff \| tree \| snapshot
2006-04-12	Diane Trout	build the python interface	commit \| commitdiff \| tree \| snapshot
2006-04-11	Diane Trout	minor fixes for older buildsystems	commit \| commitdiff \| tree \| snapshot
2006-04-08	Diane Trout	rename _LIB to _LIBRARY to be more consistent with...	commit \| commitdiff \| tree \| snapshot
2006-04-07	Diane Trout	build fltk version and deal with debian qt4 weirdness	commit \| commitdiff \| tree \| snapshot
2006-04-07	Diane Trout	make include gl.h multiplatform	commit \| commitdiff \| tree \| snapshot
2006-04-07	Diane Trout	switch to using boost::filesystem	commit \| commitdiff \| tree \| snapshot
2006-04-07	Diane Trout	put build environment support tools in makelib	commit \| commitdiff \| tree \| snapshot
2006-04-06	Diane Trout	cmake setupfiles	commit \| commitdiff \| tree \| snapshot
2006-04-04	Diane Trout	QSplitter has rendering problems on os x	commit \| commitdiff \| tree \| snapshot
2006-04-04	Diane Trout	an int signal doesn't connect to a size_t slot	commit \| commitdiff \| tree \| snapshot
2006-04-04	Diane Trout	allow making dmgs for things other than mussa	commit \| commitdiff \| tree \| snapshot
2006-03-30	Diane Trout	allow running without using the gui	commit \| commitdiff \| tree \| snapshot
2006-03-30	Diane Trout	better setup dialog label names	commit \| commitdiff \| tree \| snapshot
2006-03-29	Diane Trout	keep the sequence view at higher zoom level	commit \| commitdiff \| tree \| snapshot
2006-03-29	Diane Trout	motifs should render on top of annotations	commit \| commitdiff \| tree \| snapshot
2006-03-29	Diane Trout	make annotations big enough to show up	commit \| commitdiff \| tree \| snapshot
2006-03-29	Diane Trout	View sequence alignment at non default thresholds	commit \| commitdiff \| tree \| snapshot
2006-03-29	Diane Trout	choose alignment needs to force the sequences to redraw	commit \| commitdiff \| tree \| snapshot
2006-03-29	Diane Trout	Provide a zoom widget in MussaAlignedWindow	commit \| commitdiff \| tree \| snapshot
2006-03-29	Diane Trout	Move zoom spinbox into its own widget	commit \| commitdiff \| tree \| snapshot
2006-03-29	Diane Trout	setAlignment, as a target of a qt signal, needs to...	commit \| commitdiff \| tree \| snapshot
2006-03-29	Diane Trout	ignore some generated product	commit \| commitdiff \| tree \| snapshot
2006-03-28	Diane Trout	fix more warnings	commit \| commitdiff \| tree \| snapshot
2006-03-28	Diane Trout	threshold widget shows both base pair and percents	commit \| commitdiff \| tree \| snapshot
2006-03-28	Diane Trout	recover threshold and window size	commit \| commitdiff \| tree \| snapshot
2006-03-28	Diane Trout	improve os x makefiles	commit \| commitdiff \| tree \| snapshot
2006-03-28	Diane Trout	use qt resources for icons	commit \| commitdiff \| tree \| snapshot
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