Imported Upstream version 0.7

[pysam.git] / pysam / cvcf.c

/* Generated by Cython 0.16 on Mon Nov 19 08:44:41 2012 */

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#if defined(WIN32) || defined(MS_WINDOWS)
#define _USE_MATH_DEFINES
#endif
#include <math.h>
#define __PYX_HAVE__cvcf
#define __PYX_HAVE_API__cvcf
#include "stdlib.h"
#include "string.h"
#include "stdint.h"
#include "stdio.h"
#include "ctype.h"
#include "sys/types.h"
#include "sys/stat.h"
#include "fcntl.h"
#include "unistd.h"
#include "bgzf.h"
#include "tabix.h"
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#include <omp.h>
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static PyObject *__pyx_m;
static PyObject *__pyx_b;
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static PyObject *__pyx_empty_bytes;
static int __pyx_lineno;
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static const char *__pyx_filename;


static const char *__pyx_f[] = {
  "cvcf.pyx",
  "ctabix.pxd",
  "TabProxies.pxd",
};

/*--- Type declarations ---*/
struct __pyx_obj_6ctabix_Parser;
struct __pyx_obj_6ctabix_asVCF;
struct __pyx_obj_10TabProxies_TupleProxy;
struct __pyx_obj_10TabProxies_NamedTupleProxy;
struct __pyx_obj_10TabProxies_BedProxy;
struct __pyx_obj_6ctabix_tabix_copy_iterator;
struct __pyx_obj_4cvcf_VCFRecord;
struct __pyx_obj_10TabProxies_VCFProxy;
struct __pyx_obj_4cvcf___pyx_scope_struct_2__parse;
struct __pyx_obj_4cvcf___pyx_scope_struct__parse_data;
struct __pyx_obj_6ctabix_TabixIterator;
struct __pyx_obj_4cvcf_asVCFRecord;
struct __pyx_obj_10TabProxies_GTFProxy;
struct __pyx_obj_6ctabix_TabixIteratorParsed;
struct __pyx_obj_6ctabix_TabixHeaderIterator;
struct __pyx_obj_6ctabix_Tabixfile;
struct __pyx_obj_6ctabix_asGTF;
struct __pyx_obj_6ctabix_asBed;
struct __pyx_obj_6ctabix_tabix_inplace_iterator;
struct __pyx_obj_4cvcf___pyx_scope_struct_1_genexpr;
struct __pyx_obj_6ctabix_asTuple;
struct __pyx_defaults;
typedef struct __pyx_defaults __pyx_defaults;
struct __pyx_defaults1;
typedef struct __pyx_defaults1 __pyx_defaults1;
struct __pyx_defaults2;
typedef struct __pyx_defaults2 __pyx_defaults2;
struct __pyx_defaults3;
typedef struct __pyx_defaults3 __pyx_defaults3;
struct __pyx_defaults4;
typedef struct __pyx_defaults4 __pyx_defaults4;
struct __pyx_defaults {
  PyObject *__pyx_arg_leftalign;
};
struct __pyx_defaults1 {
  PyObject *__pyx_arg_filter;
};
struct __pyx_defaults2 {
  PyObject *__pyx_arg_filter;
};
struct __pyx_defaults3 {
  PyObject *__pyx_arg_key;
  PyObject *__pyx_arg_value;
};
struct __pyx_defaults4 {
  PyObject *__pyx_arg_lineparse;
};

/* "ctabix.pxd":190
 *     cdef tabix_t * tabixfile
 * 
 * cdef class Parser:             # <<<<<<<<<<<<<<
 *      pass
 * 
 */
struct __pyx_obj_6ctabix_Parser {
  PyObject_HEAD
};


/* "ctabix.pxd":202
 *      pass
 * 
 * cdef class asVCF(Parser):             # <<<<<<<<<<<<<<
 *      pass
 * 
 */
struct __pyx_obj_6ctabix_asVCF {
  struct __pyx_obj_6ctabix_Parser __pyx_base;
};


/* "TabProxies.pxd":41
 *   ctypedef int uint64_t
 * 
 * cdef class TupleProxy:             # <<<<<<<<<<<<<<
 * 
 *     cdef:
 */
struct __pyx_obj_10TabProxies_TupleProxy {
  PyObject_HEAD
  struct __pyx_vtabstruct_10TabProxies_TupleProxy *__pyx_vtab;
  char *data;
  char **fields;
  int nfields;
  int index;
  int nbytes;
  int offset;
  int is_modified;
};


/* "TabProxies.pxd":69
 *     cdef char * getAttributes( self )
 * 
 * cdef class NamedTupleProxy( TupleProxy) :             # <<<<<<<<<<<<<<
 *     pass
 * 
 */
struct __pyx_obj_10TabProxies_NamedTupleProxy {
  struct __pyx_obj_10TabProxies_TupleProxy __pyx_base;
};


/* "TabProxies.pxd":72
 *     pass
 * 
 * cdef class BedProxy( NamedTupleProxy) :             # <<<<<<<<<<<<<<
 * 
 *     cdef:
 */
struct __pyx_obj_10TabProxies_BedProxy {
  struct __pyx_obj_10TabProxies_NamedTupleProxy __pyx_base;
  char *contig;
  uint32_t start;
  uint32_t end;
  int bedfields;
};


/* "ctabix.pxd":218
 *     cdef __cnext__(self)
 * 
 * ctypedef class tabix_copy_iterator:             # <<<<<<<<<<<<<<
 *     cdef FILE * infile
 *     cdef Parser parser
 */
struct __pyx_obj_6ctabix_tabix_copy_iterator {
  PyObject_HEAD
  struct __pyx_vtabstruct_6ctabix_tabix_copy_iterator *__pyx_vtab;
  FILE *infile;
  struct __pyx_obj_6ctabix_Parser *parser;
};


/* "cvcf.pyx":94
 * ###########################################################################################################
 * 
 * cdef class VCFRecord( TabProxies.TupleProxy):             # <<<<<<<<<<<<<<
 *     '''vcf record.
 * 
 */
struct __pyx_obj_4cvcf_VCFRecord {
  struct __pyx_obj_10TabProxies_TupleProxy __pyx_base;
  PyObject *vcf;
  char *contig;
  uint32_t pos;
};


/* "TabProxies.pxd":83
 *     cdef update( self, char * buffer, size_t nbytes )
 * 
 * cdef class VCFProxy( NamedTupleProxy) :             # <<<<<<<<<<<<<<
 * 
 *     cdef:
 */
struct __pyx_obj_10TabProxies_VCFProxy {
  struct __pyx_obj_10TabProxies_NamedTupleProxy __pyx_base;
  char *contig;
  uint32_t pos;
};


/* "cvcf.pyx":899
 *         return line
 * 
 *     def _parse(self, line, stream):             # <<<<<<<<<<<<<<
 *         # deal with files with header only
 *         if line.startswith("##"): return
 */
struct __pyx_obj_4cvcf___pyx_scope_struct_2__parse {
  PyObject_HEAD
  PyObject *__pyx_v_d;
  PyObject *__pyx_v_line;
  PyObject *__pyx_v_self;
  PyObject *__pyx_v_stream;
  Py_ssize_t __pyx_t_0;
  PyObject *__pyx_t_1;
  PyObject *(*__pyx_t_2)(PyObject *);
};


/* "cvcf.pyx":647
 *         return False
 * 
 *     def parse_data( self, line, lineparse=False ):             # <<<<<<<<<<<<<<
 *         cols = line.split('\t')
 *         if len(cols) != len(self._samples)+9:
 */
struct __pyx_obj_4cvcf___pyx_scope_struct__parse_data {
  PyObject_HEAD
  PyObject *__pyx_v_alt;
};


/* "ctabix.pxd":182
 *     cdef char * _filename
 * 
 * cdef class TabixIterator:             # <<<<<<<<<<<<<<
 *     cdef ti_iter_t iterator
 *     cdef tabix_t * tabixfile
 */
struct __pyx_obj_6ctabix_TabixIterator {
  PyObject_HEAD
  ti_iter_t iterator;
  tabix_t *tabixfile;
};


/* "cvcf.pyx":226
 * 
 * 
 * cdef class asVCFRecord( ctabix.Parser ):             # <<<<<<<<<<<<<<
 *     '''converts a :term:`tabix row` into a VCF record.'''
 *     cdef vcffile
 */
struct __pyx_obj_4cvcf_asVCFRecord {
  struct __pyx_obj_6ctabix_Parser __pyx_base;
  PyObject *vcffile;
};


/* "TabProxies.pxd":60
 *     cdef update( self, char * buffer, size_t nbytes )
 * 
 * cdef class GTFProxy( TupleProxy) :             # <<<<<<<<<<<<<<
 * 
 *     cdef:
 */
struct __pyx_obj_10TabProxies_GTFProxy {
  struct __pyx_obj_10TabProxies_TupleProxy __pyx_base;
  char *_attributes;
  int hasOwnAttributes;
};


/* "ctabix.pxd":205
 *      pass
 * 
 * cdef class TabixIteratorParsed:             # <<<<<<<<<<<<<<
 *     cdef ti_iter_t iterator
 *     cdef tabix_t * tabixfile
 */
struct __pyx_obj_6ctabix_TabixIteratorParsed {
  PyObject_HEAD
  ti_iter_t iterator;
  tabix_t *tabixfile;
  struct __pyx_obj_6ctabix_Parser *parser;
};


/* "ctabix.pxd":186
 *     cdef tabix_t * tabixfile
 * 
 * cdef class TabixHeaderIterator:             # <<<<<<<<<<<<<<
 *     cdef ti_iter_t iterator
 *     cdef tabix_t * tabixfile
 */
struct __pyx_obj_6ctabix_TabixHeaderIterator {
  PyObject_HEAD
  ti_iter_t iterator;
  tabix_t *tabixfile;
};


/* "ctabix.pxd":172
 *   # char *ti_iter_read(BGZF *fp, ti_iter_t iter, int *len)
 * 
 * cdef class Tabixfile:             # <<<<<<<<<<<<<<
 * 
 *     # pointer to tabixfile
 */
struct __pyx_obj_6ctabix_Tabixfile {
  PyObject_HEAD
  tabix_t *tabixfile;
  int isremote;
  char *_filename;
};


/* "ctabix.pxd":196
 *      pass
 * 
 * cdef class asGTF(Parser):             # <<<<<<<<<<<<<<
 *      pass
 * 
 */
struct __pyx_obj_6ctabix_asGTF {
  struct __pyx_obj_6ctabix_Parser __pyx_base;
};


/* "ctabix.pxd":199
 *      pass
 * 
 * cdef class asBed(Parser):             # <<<<<<<<<<<<<<
 *      pass
 * 
 */
struct __pyx_obj_6ctabix_asBed {
  struct __pyx_obj_6ctabix_Parser __pyx_base;
};


/* "ctabix.pxd":210
 *     cdef Parser parser
 * 
 * ctypedef class tabix_inplace_iterator:             # <<<<<<<<<<<<<<
 *     cdef FILE * infile
 *     cdef char * buffer
 */
struct __pyx_obj_6ctabix_tabix_inplace_iterator {
  PyObject_HEAD
  struct __pyx_vtabstruct_6ctabix_tabix_inplace_iterator *__pyx_vtab;
  FILE *infile;
  char *buffer;
  size_t size;
  struct __pyx_obj_6ctabix_Parser *parser;
};


/* "cvcf.pyx":790
 *         if alt:
 *             for i in range(1,min(len(ref),min(map(len,alt)))):
 *                 if len(set(allele[-1].upper() for allele in alt)) > 1 or ref[-1].upper() != alt[0][-1].upper():             # <<<<<<<<<<<<<<
 *                     break
 *                 ref, alt = ref[:-1], [allele[:-1] for allele in alt]
 */
struct __pyx_obj_4cvcf___pyx_scope_struct_1_genexpr {
  PyObject_HEAD
  struct __pyx_obj_4cvcf___pyx_scope_struct__parse_data *__pyx_outer_scope;
  PyObject *__pyx_v_allele;
  PyObject *__pyx_t_0;
  Py_ssize_t __pyx_t_1;
  PyObject *(*__pyx_t_2)(PyObject *);
};


/* "ctabix.pxd":193
 *      pass
 * 
 * cdef class asTuple(Parser):             # <<<<<<<<<<<<<<
 *      pass
 * 
 */
struct __pyx_obj_6ctabix_asTuple {
  struct __pyx_obj_6ctabix_Parser __pyx_base;
};



/* "ctabix.pxd":218
 *     cdef __cnext__(self)
 * 
 * ctypedef class tabix_copy_iterator:             # <<<<<<<<<<<<<<
 *     cdef FILE * infile
 *     cdef Parser parser
 */

struct __pyx_vtabstruct_6ctabix_tabix_copy_iterator {
  PyObject *(*__pyx___cnext__)(struct __pyx_obj_6ctabix_tabix_copy_iterator *);
};
static struct __pyx_vtabstruct_6ctabix_tabix_copy_iterator *__pyx_vtabptr_6ctabix_tabix_copy_iterator;


/* "TabProxies.pxd":41
 *   ctypedef int uint64_t
 * 
 * cdef class TupleProxy:             # <<<<<<<<<<<<<<
 * 
 *     cdef:
 */

struct __pyx_vtabstruct_10TabProxies_TupleProxy {
  int (*getMaxFields)(struct __pyx_obj_10TabProxies_TupleProxy *, size_t);
  PyObject *(*take)(struct __pyx_obj_10TabProxies_TupleProxy *, char *, size_t);
  PyObject *(*present)(struct __pyx_obj_10TabProxies_TupleProxy *, char *, size_t);
  PyObject *(*copy)(struct __pyx_obj_10TabProxies_TupleProxy *, char *, size_t);
  PyObject *(*update)(struct __pyx_obj_10TabProxies_TupleProxy *, char *, size_t);
};
static struct __pyx_vtabstruct_10TabProxies_TupleProxy *__pyx_vtabptr_10TabProxies_TupleProxy;


/* "TabProxies.pxd":69
 *     cdef char * getAttributes( self )
 * 
 * cdef class NamedTupleProxy( TupleProxy) :             # <<<<<<<<<<<<<<
 *     pass
 * 
 */

struct __pyx_vtabstruct_10TabProxies_NamedTupleProxy {
  struct __pyx_vtabstruct_10TabProxies_TupleProxy __pyx_base;
};
static struct __pyx_vtabstruct_10TabProxies_NamedTupleProxy *__pyx_vtabptr_10TabProxies_NamedTupleProxy;


/* "TabProxies.pxd":83
 *     cdef update( self, char * buffer, size_t nbytes )
 * 
 * cdef class VCFProxy( NamedTupleProxy) :             # <<<<<<<<<<<<<<
 * 
 *     cdef:
 */

struct __pyx_vtabstruct_10TabProxies_VCFProxy {
  struct __pyx_vtabstruct_10TabProxies_NamedTupleProxy __pyx_base;
};
static struct __pyx_vtabstruct_10TabProxies_VCFProxy *__pyx_vtabptr_10TabProxies_VCFProxy;


/* "ctabix.pxd":210
 *     cdef Parser parser
 * 
 * ctypedef class tabix_inplace_iterator:             # <<<<<<<<<<<<<<
 *     cdef FILE * infile
 *     cdef char * buffer
 */

struct __pyx_vtabstruct_6ctabix_tabix_inplace_iterator {
  PyObject *(*__pyx___cnext__)(struct __pyx_obj_6ctabix_tabix_inplace_iterator *);
};
static struct __pyx_vtabstruct_6ctabix_tabix_inplace_iterator *__pyx_vtabptr_6ctabix_tabix_inplace_iterator;


/* "TabProxies.pxd":60
 *     cdef update( self, char * buffer, size_t nbytes )
 * 
 * cdef class GTFProxy( TupleProxy) :             # <<<<<<<<<<<<<<
 * 
 *     cdef:
 */

struct __pyx_vtabstruct_10TabProxies_GTFProxy {
  struct __pyx_vtabstruct_10TabProxies_TupleProxy __pyx_base;
  char *(*getAttributes)(struct __pyx_obj_10TabProxies_GTFProxy *);
};
static struct __pyx_vtabstruct_10TabProxies_GTFProxy *__pyx_vtabptr_10TabProxies_GTFProxy;


/* "cvcf.pyx":94
 * ###########################################################################################################
 * 
 * cdef class VCFRecord( TabProxies.TupleProxy):             # <<<<<<<<<<<<<<
 *     '''vcf record.
 * 
 */

struct __pyx_vtabstruct_4cvcf_VCFRecord {
  struct __pyx_vtabstruct_10TabProxies_TupleProxy __pyx_base;
};
static struct __pyx_vtabstruct_4cvcf_VCFRecord *__pyx_vtabptr_4cvcf_VCFRecord;


/* "TabProxies.pxd":72
 *     pass
 * 
 * cdef class BedProxy( NamedTupleProxy) :             # <<<<<<<<<<<<<<
 * 
 *     cdef:
 */

struct __pyx_vtabstruct_10TabProxies_BedProxy {
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static struct __pyx_vtabstruct_10TabProxies_BedProxy *__pyx_vtabptr_10TabProxies_BedProxy;
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static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact,
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static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i) {
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static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); /*proto*/

static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb); /*proto*/
static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb); /*proto*/

static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); /*proto*/

static double __Pyx__PyObject_AsDouble(PyObject* obj); /* proto */
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static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname);

static CYTHON_INLINE void __Pyx_RaiseNoneIndexingError(void);

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static CYTHON_INLINE int __Pyx_NegateNonNeg(int b) {
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static CYTHON_INLINE PyObject* __Pyx_PyBoolOrNull_FromLong(long b) {
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static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index);

static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);

static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected); /*proto*/

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static CYTHON_INLINE PyObject* __Pyx_PyObject_Append(PyObject* L, PyObject* x) {
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static __pyx_GeneratorObject *__Pyx_Generator_New(__pyx_generator_body_t body,
                                                  PyObject *closure);
static int __pyx_Generator_init(void);

static int __Pyx_check_binary_version(void);

#if !defined(__Pyx_PyIdentifier_FromString)
#if PY_MAJOR_VERSION < 3
  #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s)
#else
  #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s)
#endif
#endif

static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict);  /*proto*/

static PyObject *__Pyx_ImportModule(const char *name); /*proto*/

static void* __Pyx_GetVtable(PyObject *dict); /*proto*/

static int __Pyx_SetVtable(PyObject *dict, void *vtable); /*proto*/

typedef struct {
    int code_line;
    PyCodeObject* code_object;
} __Pyx_CodeObjectCacheEntry;
struct __Pyx_CodeObjectCache {
    int count;
    int max_count;
    __Pyx_CodeObjectCacheEntry* entries;
};
static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL};
static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line);
static PyCodeObject *__pyx_find_code_object(int code_line);
static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object);

static void __Pyx_AddTraceback(const char *funcname, int c_line,
                               int py_line, const char *filename); /*proto*/

static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); /*proto*/


/* Module declarations from 'ctabix' */
static PyTypeObject *__pyx_ptype_6ctabix_Tabixfile = 0;
static PyTypeObject *__pyx_ptype_6ctabix_TabixIterator = 0;
static PyTypeObject *__pyx_ptype_6ctabix_TabixHeaderIterator = 0;
static PyTypeObject *__pyx_ptype_6ctabix_Parser = 0;
static PyTypeObject *__pyx_ptype_6ctabix_asTuple = 0;
static PyTypeObject *__pyx_ptype_6ctabix_asGTF = 0;
static PyTypeObject *__pyx_ptype_6ctabix_asBed = 0;
static PyTypeObject *__pyx_ptype_6ctabix_asVCF = 0;
static PyTypeObject *__pyx_ptype_6ctabix_TabixIteratorParsed = 0;
static PyTypeObject *__pyx_ptype_6ctabix_tabix_inplace_iterator = 0;
static PyTypeObject *__pyx_ptype_6ctabix_tabix_copy_iterator = 0;

/* Module declarations from 'TabProxies' */
static PyTypeObject *__pyx_ptype_10TabProxies_TupleProxy = 0;
static PyTypeObject *__pyx_ptype_10TabProxies_GTFProxy = 0;
static PyTypeObject *__pyx_ptype_10TabProxies_NamedTupleProxy = 0;
static PyTypeObject *__pyx_ptype_10TabProxies_BedProxy = 0;
static PyTypeObject *__pyx_ptype_10TabProxies_VCFProxy = 0;

/* Module declarations from 'cvcf' */
static PyTypeObject *__pyx_ptype_4cvcf_VCFRecord = 0;
static PyTypeObject *__pyx_ptype_4cvcf_asVCFRecord = 0;
static PyTypeObject *__pyx_ptype_4cvcf___pyx_scope_struct__parse_data = 0;
static PyTypeObject *__pyx_ptype_4cvcf___pyx_scope_struct_1_genexpr = 0;
static PyTypeObject *__pyx_ptype_4cvcf___pyx_scope_struct_2__parse = 0;
#define __Pyx_MODULE_NAME "cvcf"
int __pyx_module_is_main_cvcf = 0;

/* Implementation of 'cvcf' */
static PyObject *__pyx_builtin_object;
static PyObject *__pyx_builtin_ValueError;
static PyObject *__pyx_builtin_range;
static PyObject *__pyx_builtin_enumerate;
static PyObject *__pyx_builtin_map;
static PyObject *__pyx_builtin_min;
static PyObject *__pyx_builtin_zip;
static PyObject *__pyx_builtin_StopIteration;
static PyObject *__pyx_builtin_KeyError;
static PyObject *__pyx_builtin_NotImplementedError;
static PyObject *__pyx_pf_4cvcf_get_sequence(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_chrom, PyObject *__pyx_v_start, PyObject *__pyx_v_end, PyObject *__pyx_v_fa); /* proto */
static PyObject *__pyx_pf_4cvcf_2parse_regions(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_string); /* proto */
static int __pyx_pf_4cvcf_9VCFRecord___init__(struct __pyx_obj_4cvcf_VCFRecord *__pyx_v_self, PyObject *__pyx_v_vcf); /* proto */
static int __pyx_pf_4cvcf_9VCFRecord_2__cinit__(struct __pyx_obj_4cvcf_VCFRecord *__pyx_v_self, PyObject *__pyx_v_vcf); /* proto */
static PyObject *__pyx_pf_4cvcf_9VCFRecord_4error(struct __pyx_obj_4cvcf_VCFRecord *__pyx_v_self, PyObject *__pyx_v_line, PyObject *__pyx_v_error, PyObject *__pyx_v_opt); /* proto */
static Py_ssize_t __pyx_pf_4cvcf_9VCFRecord_6__len__(struct __pyx_obj_4cvcf_VCFRecord *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_4cvcf_9VCFRecord_6contig___get__(struct __pyx_obj_4cvcf_VCFRecord *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_4cvcf_9VCFRecord_3pos___get__(struct __pyx_obj_4cvcf_VCFRecord *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_4cvcf_9VCFRecord_2id___get__(struct __pyx_obj_4cvcf_VCFRecord *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_4cvcf_9VCFRecord_3ref___get__(struct __pyx_obj_4cvcf_VCFRecord *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_4cvcf_9VCFRecord_3alt___get__(struct __pyx_obj_4cvcf_VCFRecord *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_4cvcf_9VCFRecord_4qual___get__(struct __pyx_obj_4cvcf_VCFRecord *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_4cvcf_9VCFRecord_6filter___get__(struct __pyx_obj_4cvcf_VCFRecord *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_4cvcf_9VCFRecord_4info___get__(struct __pyx_obj_4cvcf_VCFRecord *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_4cvcf_9VCFRecord_6format___get__(struct __pyx_obj_4cvcf_VCFRecord *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_4cvcf_9VCFRecord_7samples___get__(struct __pyx_obj_4cvcf_VCFRecord *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_4cvcf_9VCFRecord_8__getitem__(struct __pyx_obj_4cvcf_VCFRecord *__pyx_v_self, PyObject *__pyx_v_key); /* proto */
static int __pyx_pf_4cvcf_11asVCFRecord___init__(struct __pyx_obj_4cvcf_asVCFRecord *__pyx_v_self, PyObject *__pyx_v_vcffile); /* proto */
static PyObject *__pyx_pf_4cvcf_11asVCFRecord_2__call__(struct __pyx_obj_4cvcf_asVCFRecord *__pyx_v_self, char *__pyx_v_buffer, int __pyx_v_len); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_85__defaults__(CYTHON_UNUSED PyObject *__pyx_self); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v__copy, PyObject *__pyx_v_reference, PyObject *__pyx_v_regions, PyObject *__pyx_v_lines, PyObject *__pyx_v_leftalign); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_2error(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_line, PyObject *__pyx_v_error, PyObject *__pyx_v_opt); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_87__defaults__(CYTHON_UNUSED PyObject *__pyx_self); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_4parse_format(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_line, PyObject *__pyx_v_format, PyObject *__pyx_v_filter); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_89__defaults__(CYTHON_UNUSED PyObject *__pyx_self); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_6format_format(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_fmt, PyObject *__pyx_v_filter); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_8get_expected(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_format, PyObject *__pyx_v_formatdict, PyObject *__pyx_v_alt); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_10_add_definition(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_formatdict, PyObject *__pyx_v_key, PyObject *__pyx_v_data, PyObject *__pyx_v_line); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_91__defaults__(CYTHON_UNUSED PyObject *__pyx_self); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_12format_formatdata(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_data, PyObject *__pyx_v_format, PyObject *__pyx_v_key, PyObject *__pyx_v_value, PyObject *__pyx_v_separator); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_14enter_default_format(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_16parse_header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_line); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_18write_header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_stream); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_20parse_heading(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_line); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_22write_heading(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_stream); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_24convertGT(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_GTstring); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_26convertGTback(CYTHON_UNUSED PyObject *__pyx_self, CYTHON_UNUSED PyObject *__pyx_v_self, PyObject *__pyx_v_GTdata); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_28parse_formatdata(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_value, PyObject *__pyx_v_formatdict, PyObject *__pyx_v_line); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_30inregion(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_chrom, PyObject *__pyx_v_pos); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_93__defaults__(CYTHON_UNUSED PyObject *__pyx_self); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_10parse_data_genexpr(PyObject *__pyx_self); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_32parse_data(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_line, PyObject *__pyx_v_lineparse); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_34write_data(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_stream, PyObject *__pyx_v_data); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_36_parse_header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_stream); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_38_parse(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_line, PyObject *__pyx_v_stream); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_41getsamples(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_43setsamples(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_samples); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_45getheader(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_47setheader(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_header); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_49getinfo(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_51setinfo(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_info); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_53getformat(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_55setformat(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_format); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_57getfilter(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_59setfilter(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_filter); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_61setversion(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_version); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_63setregions(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_regions); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_65setreference(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_ref); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_67ignoreerror(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_errorstring); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_69warnerror(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_errorstring); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_71parse(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_stream); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_73write(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_stream, PyObject *__pyx_v_datagenerator); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_75writeheader(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_stream); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_77compare_calls(CYTHON_UNUSED PyObject *__pyx_self, CYTHON_UNUSED PyObject *__pyx_v_self, PyObject *__pyx_v_pos1, PyObject *__pyx_v_ref1, PyObject *__pyx_v_alt1, PyObject *__pyx_v_pos2, PyObject *__pyx_v_ref2, PyObject *__pyx_v_alt2); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_79connect(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_filename); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_81fetch(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_reference, PyObject *__pyx_v_start, PyObject *__pyx_v_end, PyObject *__pyx_v_region); /* proto */
static PyObject *__pyx_pf_4cvcf_3VCF_83validate(CYTHON_UNUSED PyObject *__pyx_self, CYTHON_UNUSED PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_record); /* proto */
static char __pyx_k_1[] = "";
static char __pyx_k_2[] = ",";
static char __pyx_k_4[] = ":";
static char __pyx_k_6[] = "-";
static char __pyx_k_8[] = "Don't understand region string '%s'";
static char __pyx_k_9[] = ".";
static char __pyx_k_11[] = ";";
static char __pyx_k_14[] = "=";
static char __pyx_k_18[] = "BAD_NUMBER_OF_VALUES";
static char __pyx_k_19[] = "(found %s values in element %s; expected %s)";
static char __pyx_k_20[] = "BAD_NUMBER_OF_PARAMETERS";
static char __pyx_k_21[] = "id=%s, expected %s parameters, got %s";
static char __pyx_k_24[] = " in line %s: '%s'\n%s %s: %s\n";
static char __pyx_k_25[] = "<";
static char __pyx_k_27[] = "V40_MISSING_ANGLE_BRACKETS";
static char __pyx_k_28[] = ">";
static char __pyx_k_32[] = "\"";
static char __pyx_k_36[] = "V40_FORMAT_MUST_HAVE_NAMED_FIELDS";
static char __pyx_k_37[] = "BADLY_FORMATTED_FORMAT_STRING";
static char __pyx_k_38[] = "ID=";
static char __pyx_k_39[] = "Number=";
static char __pyx_k_40[] = "Type=";
static char __pyx_k_41[] = "Description=";
static char __pyx_k_50[] = "FORMAT_MISSING_QUOTES";
static char __pyx_k_53[] = "#alleles";
static char __pyx_k_54[] = "#nonref_alleles";
static char __pyx_k_55[] = "#genotypes";
static char __pyx_k_56[] = "#phased_genotypes";
static char __pyx_k_57[] = "ZERO_FOR_NON_FLAG_FIELD";
static char __pyx_k_58[] = "Unknown number type encountered: %s";
static char __pyx_k_59[] = "%s=%s";
static char __pyx_k_60[] = "(Undefined tag)";
static char __pyx_k_61[] = "(output)";
static char __pyx_k_64[] = "Read depth at this position for this sample";
static char __pyx_k_65[] = "Sample Genotype Filter";
static char __pyx_k_66[] = "Genotype likelihoods";
static char __pyx_k_67[] = "Genotype Quality";
static char __pyx_k_68[] = "Phred-scaled genotype likelihoods";
static char __pyx_k_69[] = "Genotype posterior probabilities";
static char __pyx_k_70[] = "Conditional genotype quality";
static char __pyx_k_71[] = "Haplotype Quality";
static char __pyx_k_72[] = "Phase set";
static char __pyx_k_73[] = "Phasing quality";
static char __pyx_k_74[] = "Expected alternate allel counts";
static char __pyx_k_75[] = "RMS mapping quality";
static char __pyx_k_76[] = "##";
static char __pyx_k_79[] = "VCFv3.3";
static char __pyx_k_80[] = "VCFv4.0";
static char __pyx_k_81[] = "VCFv4.1";
static char __pyx_k_82[] = "UNKNOWN_FORMAT_STRING";
static char __pyx_k_83[] = "##fileformat=VCFv%s.%s\n";
static char __pyx_k_84[] = "##%s=%s\n";
static char __pyx_k_85[] = "#";
static char __pyx_k_88[] = "\t";
static char __pyx_k_90[] = "HEADING_NOT_SEPARATED_BY_TABS";
static char __pyx_k_91[] = "(%sth entry not found)";
static char __pyx_k_92[] = "(found %s, expected %s)";
static char __pyx_k_93[] = "BADLY_FORMATTED_HEADING";
static char __pyx_k_94[] = "\n";
static char __pyx_k_95[] = "|";
static char __pyx_k_96[] = "ERROR_FLAG_HAS_VALUE";
static char __pyx_k__0[] = "0";
static char __pyx_k__A[] = "A";
static char __pyx_k__D[] = "D";
static char __pyx_k__G[] = "G";
static char __pyx_k__I[] = "I";
static char __pyx_k__N[] = "N";
static char __pyx_k__a[] = "a";
static char __pyx_k__c[] = "c";
static char __pyx_k__d[] = "d";
static char __pyx_k__f[] = "f";
static char __pyx_k__i[] = "i";
static char __pyx_k__k[] = "k";
static char __pyx_k__l[] = "l";
static char __pyx_k__n[] = "n";
static char __pyx_k__r[] = "r";
static char __pyx_k__s[] = "s";
static char __pyx_k__t[] = "t";
static char __pyx_k__v[] = "v";
static char __pyx_k__x[] = "x";
static char __pyx_k__y[] = "y";
static char __pyx_k_100[] = "ERROR_FORMAT_NOT_INTEGER";
static char __pyx_k_101[] = "ERROR_FORMAT_NOT_CHAR";
static char __pyx_k_102[] = "ERROR_FORMAT_NOT_NUMERICAL";
static char __pyx_k_104[] = "BAD_NUMBER_OF_COLUMNS";
static char __pyx_k_105[] = "expected %s for %s samples (%s), got %s";
static char __pyx_k_106[] = "(reference is %s, VCF says %s)";
static char __pyx_k_114[] = "V33_UNMATCHED_DELETION";
static char __pyx_k_115[] = "(deletion is %s, reference is %s)";
static char __pyx_k_116[] = "MISSING_INDEL_ALLELE_REF_BASE";
static char __pyx_k_118[] = "Required key %s not found in data";
static char __pyx_k_121[] = "enter_default_format";
static char __pyx_k_123[] = "Can only handle v3.3 and v4.0 VCF files";
static char __pyx_k_125[] = "Invalid error string: %s";
static char __pyx_k_126[] = "needs to be checked";
static char __pyx_k_128[] = "[|/\\\\]";
static char __pyx_k_130[] = "^[ACGTN]+$";
static char __pyx_k_134[] = "/ifs/devel/pysam/pysam/cvcf.pyx";
static char __pyx_k_137[] = "id numbertype number type description missingvalue";
static char __pyx_k_139[] = "UNKNOWN_FORMAT_STRING:Unknown file format identifier";
static char __pyx_k_140[] = "BADLY_FORMATTED_FORMAT_STRING:Formatting error in the format string";
static char __pyx_k_141[] = "BADLY_FORMATTED_HEADING:Did not find 9 required headings (CHROM, POS, ..., FORMAT) %s";
static char __pyx_k_142[] = "BAD_NUMBER_OF_COLUMNS:Wrong number of columns found (%s)";
static char __pyx_k_143[] = "POS_NOT_NUMERICAL:Position column is not numerical";
static char __pyx_k_144[] = "UNKNOWN_CHAR_IN_REF:Unknown character in reference field";
static char __pyx_k_145[] = "V33_BAD_REF:Reference should be single-character in v3.3 VCF";
static char __pyx_k_146[] = "V33_BAD_ALLELE:Cannot interpret allele for v3.3 VCF";
static char __pyx_k_147[] = "POS_NOT_POSITIVE:Position field must be >0";
static char __pyx_k_148[] = "QUAL_NOT_NUMERICAL:Quality field must be numerical, or '.'";
static char __pyx_k_149[] = "ERROR_INFO_STRING:Error while parsing info field";
static char __pyx_k_150[] = "ERROR_UNKNOWN_KEY:Unknown key (%s) found in formatted field (info; format; or filter)";
static char __pyx_k_151[] = "ERROR_FORMAT_NOT_NUMERICAL:Expected integer or float in formatted field; got %s";
static char __pyx_k_152[] = "ERROR_FORMAT_NOT_CHAR:Eexpected character in formatted field; got string";
static char __pyx_k_153[] = "FILTER_NOT_DEFINED:Identifier (%s) in filter found which was not defined in header";
static char __pyx_k_154[] = "FORMAT_NOT_DEFINED:Identifier (%s) in format found which was not defined in header";
static char __pyx_k_155[] = "BAD_NUMBER_OF_VALUES:Found too many of values in sample column (%s)";
static char __pyx_k_156[] = "BAD_NUMBER_OF_PARAMETERS:Found unexpected number of parameters (%s)";
static char __pyx_k_157[] = "BAD_GENOTYPE:Cannot parse genotype (%s)";
static char __pyx_k_158[] = "V40_BAD_ALLELE:Bad allele found for v4.0 VCF (%s)";
static char __pyx_k_159[] = "MISSING_REF:Reference allele missing";
static char __pyx_k_160[] = "V33_UNMATCHED_DELETION:Deleted sequence does not match reference (%s)";
static char __pyx_k_161[] = "V40_MISSING_ANGLE_BRACKETS:Format definition is not deliminted by angular brackets";
static char __pyx_k_162[] = "FORMAT_MISSING_QUOTES:Description field in format definition is not surrounded by quotes";
static char __pyx_k_163[] = "V40_FORMAT_MUST_HAVE_NAMED_FIELDS:Fields in v4.0 VCF format definition must have named fields";
static char __pyx_k_164[] = "HEADING_NOT_SEPARATED_BY_TABS:Heading line appears separated by spaces, not tabs";
static char __pyx_k_165[] = "WRONG_REF:Wrong reference %s";
static char __pyx_k_166[] = "ERROR_TRAILING_DATA:Numerical field ('%s') has semicolon-separated trailing data";
static char __pyx_k_167[] = "BAD_CHR_TAG:Error calculating chr tag for %s";
static char __pyx_k_168[] = "ZERO_LENGTH_ALLELE:Found zero-length allele";
static char __pyx_k_169[] = "MISSING_INDEL_ALLELE_REF_BASE:Indel alleles must begin with single reference base";
static char __pyx_k_170[] = "ZERO_FOR_NON_FLAG_FIELD: number set to 0, but type is not 'FLAG'";
static char __pyx_k_171[] = "ERROR_FORMAT_NOT_INTEGER:Expected integer in formatted field; got %s";
static char __pyx_k_172[] = "ERROR_FLAG_HAS_VALUE:Flag fields should not have a value";
static char __pyx_k__DP[] = "DP";
static char __pyx_k__EC[] = "EC";
static char __pyx_k__FT[] = "FT";
static char __pyx_k__GL[] = "GL";
static char __pyx_k__GP[] = "GP";
static char __pyx_k__GQ[] = "GQ";
static char __pyx_k__GT[] = "GT";
static char __pyx_k__HQ[] = "HQ";
static char __pyx_k__ID[] = "ID";
static char __pyx_k__MQ[] = "MQ";
static char __pyx_k__PL[] = "PL";
static char __pyx_k__PQ[] = "PQ";
static char __pyx_k__PS[] = "PS";
static char __pyx_k__fa[] = "fa";
static char __pyx_k__id[] = "id";
static char __pyx_k__na[] = "na";
static char __pyx_k__re[] = "re";
static char __pyx_k__ALT[] = "ALT";
static char __pyx_k__GLE[] = "GLE";
static char __pyx_k__POS[] = "POS";
static char __pyx_k__REF[] = "REF";
static char __pyx_k__VCF[] = "VCF";
static char __pyx_k__add[] = "add";
static char __pyx_k__alt[] = "alt";
static char __pyx_k__end[] = "end";
static char __pyx_k__err[] = "err";
static char __pyx_k__fmt[] = "fmt";
static char __pyx_k__get[] = "get";
static char __pyx_k__gts[] = "gts";
static char __pyx_k__idx[] = "idx";
static char __pyx_k__key[] = "key";
static char __pyx_k__len[] = "len";
static char __pyx_k__map[] = "map";
static char __pyx_k__min[] = "min";
static char __pyx_k__nmb[] = "nmb";
static char __pyx_k__opt[] = "opt";
static char __pyx_k__pos[] = "pos";
static char __pyx_k__ref[] = "ref";
static char __pyx_k__sys[] = "sys";
static char __pyx_k__var[] = "var";
static char __pyx_k__vcf[] = "vcf";
static char __pyx_k__zip[] = "zip";
static char __pyx_k__Flag[] = "Flag";
static char __pyx_k__INFO[] = "INFO";
static char __pyx_k__PASS[] = "PASS";
static char __pyx_k__QUAL[] = "QUAL";
static char __pyx_k__Type[] = "Type";
static char __pyx_k__addn[] = "addn";
static char __pyx_k__alt1[] = "alt1";
static char __pyx_k__alt2[] = "alt2";
static char __pyx_k__cols[] = "cols";
static char __pyx_k__copy[] = "copy";
static char __pyx_k__cvcf[] = "cvcf";
static char __pyx_k__data[] = "data";
static char __pyx_k__dict[] = "dict";
static char __pyx_k__elts[] = "elts";
static char __pyx_k__find[] = "find";
static char __pyx_k__info[] = "info";
static char __pyx_k__join[] = "join";
static char __pyx_k__keys[] = "keys";
static char __pyx_k__last[] = "last";
static char __pyx_k__left[] = "left";
static char __pyx_k__line[] = "line";
static char __pyx_k__pos1[] = "pos1";
static char __pyx_k__pos2[] = "pos2";
static char __pyx_k__qual[] = "qual";
static char __pyx_k__ref1[] = "ref1";
static char __pyx_k__ref2[] = "ref2";
static char __pyx_k__rest[] = "rest";
static char __pyx_k__self[] = "self";
static char __pyx_k__type[] = "type";
static char __pyx_k__ACGTN[] = "ACGTN";
static char __pyx_k__CHROM[] = "CHROM";
static char __pyx_k__Error[] = "Error";
static char __pyx_k__Float[] = "Float";
static char __pyx_k___copy[] = "_copy";
static char __pyx_k___info[] = "_info";
static char __pyx_k___line[] = "_line";
static char __pyx_k__addns[] = "addns";
static char __pyx_k__blurp[] = "blurp";
static char __pyx_k__chrom[] = "chrom";
static char __pyx_k__descr[] = "descr";
static char __pyx_k__error[] = "error";
static char __pyx_k__faref[] = "faref";
static char __pyx_k__fetch[] = "fetch";
static char __pyx_k__first[] = "first";
static char __pyx_k__ielts[] = "ielts";
static char __pyx_k__label[] = "label";
static char __pyx_k__lines[] = "lines";
static char __pyx_k__match[] = "match";
static char __pyx_k__parse[] = "parse";
static char __pyx_k__pysam[] = "pysam";
static char __pyx_k__range[] = "range";
static char __pyx_k__sdata[] = "sdata";
static char __pyx_k__split[] = "split";
static char __pyx_k__start[] = "start";
static char __pyx_k__strip[] = "strip";
static char __pyx_k__upper[] = "upper";
static char __pyx_k__value[] = "value";
static char __pyx_k__write[] = "write";
static char __pyx_k__FILTER[] = "FILTER";
static char __pyx_k__FORMAT[] = "FORMAT";
static char __pyx_k__GTdata[] = "GTdata";
static char __pyx_k__Number[] = "Number";
static char __pyx_k__String[] = "String";
static char __pyx_k___lines[] = "_lines";
static char __pyx_k___parse[] = "_parse";
static char __pyx_k__allele[] = "allele";
static char __pyx_k__bisect[] = "bisect";
static char __pyx_k__buffer[] = "buffer";
static char __pyx_k__filter[] = "filter";
static char __pyx_k__format[] = "format";
static char __pyx_k__header[] = "header";
static char __pyx_k__number[] = "number";
static char __pyx_k__object[] = "object";
static char __pyx_k__output[] = "output";
static char __pyx_k__parser[] = "parser";
static char __pyx_k__record[] = "record";
static char __pyx_k__region[] = "region";
static char __pyx_k__result[] = "result";
static char __pyx_k__sample[] = "sample";
static char __pyx_k__stream[] = "stream";
static char __pyx_k__string[] = "string";
static char __pyx_k__values[] = "values";
static char __pyx_k__Integer[] = "Integer";
static char __pyx_k__Warning[] = "Warning";
static char __pyx_k____all__[] = "__all__";
static char __pyx_k___errors[] = "_errors";
static char __pyx_k___filter[] = "_filter";
static char __pyx_k___format[] = "_format";
static char __pyx_k___header[] = "_header";
static char __pyx_k___lineno[] = "_lineno";
static char __pyx_k__compile[] = "compile";
static char __pyx_k__connect[] = "connect";
static char __pyx_k__errwarn[] = "errwarn";
static char __pyx_k__genexpr[] = "genexpr";
static char __pyx_k__getinfo[] = "getinfo";
static char __pyx_k__longest[] = "longest";
static char __pyx_k__missing[] = "missing";
static char __pyx_k__movable[] = "movable";
static char __pyx_k__newalts[] = "newalts";
static char __pyx_k__regions[] = "regions";
static char __pyx_k__replace[] = "replace";
static char __pyx_k__samples[] = "samples";
static char __pyx_k__setinfo[] = "setinfo";
static char __pyx_k__vcffile[] = "vcffile";
static char __pyx_k__version[] = "version";
static char __pyx_k__GTstring[] = "GTstring";
static char __pyx_k__Genotype[] = "Genotype";
static char __pyx_k__KeyError[] = "KeyError";
static char __pyx_k____dict__[] = "__dict__";
static char __pyx_k____init__[] = "__init__";
static char __pyx_k____main__[] = "__main__";
static char __pyx_k____test__[] = "__test__";
static char __pyx_k___regions[] = "_regions";
static char __pyx_k___samples[] = "_samples";
static char __pyx_k___version[] = "_version";
static char __pyx_k__deepcopy[] = "deepcopy";
static char __pyx_k__endswith[] = "endswith";
static char __pyx_k__expected[] = "expected";
static char __pyx_k__filename[] = "filename";
static char __pyx_k__gtsRegEx[] = "gtsRegEx";
static char __pyx_k__headings[] = "headings";
static char __pyx_k__inregion[] = "inregion";
static char __pyx_k__operator[] = "operator";
static char __pyx_k__required[] = "required";
static char __pyx_k__sequence[] = "sequence";
static char __pyx_k__shortest[] = "shortest";
static char __pyx_k__validate[] = "validate";
static char __pyx_k__Character[] = "Character";
static char __pyx_k__NT_NUMBER[] = "NT_NUMBER";
static char __pyx_k__Tabixfile[] = "Tabixfile";
static char __pyx_k__VCFRecord[] = "VCFRecord";
static char __pyx_k__WRONG_REF[] = "WRONG_REF";
static char __pyx_k___required[] = "_required";
static char __pyx_k__convertGT[] = "convertGT";
static char __pyx_k__enumerate[] = "enumerate";
static char __pyx_k__getfilter[] = "getfilter";
static char __pyx_k__getformat[] = "getformat";
static char __pyx_k__getheader[] = "getheader";
static char __pyx_k__last_line[] = "last_line";
static char __pyx_k__leftalign[] = "leftalign";
static char __pyx_k__lineparse[] = "lineparse";
static char __pyx_k__reference[] = "reference";
static char __pyx_k__separator[] = "separator";
static char __pyx_k__setfilter[] = "setfilter";
static char __pyx_k__setformat[] = "setformat";
static char __pyx_k__setheader[] = "setheader";
static char __pyx_k__tabixfile[] = "tabixfile";
static char __pyx_k__warnerror[] = "warnerror";
static char __pyx_k__NT_ALLELES[] = "NT_ALLELES";
static char __pyx_k__NT_UNKNOWN[] = "NT_UNKNOWN";
static char __pyx_k__ValueError[] = "ValueError";
static char __pyx_k___leftalign[] = "_leftalign";
static char __pyx_k___reference[] = "_reference";
static char __pyx_k__errorlabel[] = "errorlabel";
static char __pyx_k__fileformat[] = "fileformat";
static char __pyx_k__formatdict[] = "formatdict";
static char __pyx_k__getsamples[] = "getsamples";
static char __pyx_k__itemgetter[] = "itemgetter";
static char __pyx_k__itervalues[] = "itervalues";
static char __pyx_k__namedtuple[] = "namedtuple";
static char __pyx_k__numbertype[] = "numbertype";
static char __pyx_k__parse_data[] = "parse_data";
static char __pyx_k__setregions[] = "setregions";
static char __pyx_k__setsamples[] = "setsamples";
static char __pyx_k__setversion[] = "setversion";
static char __pyx_k__startswith[] = "startswith";
static char __pyx_k__write_data[] = "write_data";
static char __pyx_k__Description[] = "Description";
static char __pyx_k__MISSING_REF[] = "MISSING_REF";
static char __pyx_k__V33_BAD_REF[] = "V33_BAD_REF";
static char __pyx_k__alleleRegEx[] = "alleleRegEx";
static char __pyx_k__collections[] = "collections";
static char __pyx_k__defaultdict[] = "defaultdict";
static char __pyx_k__description[] = "description";
static char __pyx_k__errorstring[] = "errorstring";
static char __pyx_k__ignoreerror[] = "ignoreerror";
static char __pyx_k__writeheader[] = "writeheader";
static char __pyx_k__BAD_GENOTYPE[] = "BAD_GENOTYPE";
static char __pyx_k__NT_GENOTYPES[] = "NT_GENOTYPES";
static char __pyx_k___warn_errors[] = "_warn_errors";
static char __pyx_k__get_expected[] = "get_expected";
static char __pyx_k__get_sequence[] = "get_sequence";
static char __pyx_k__missingvalue[] = "missingvalue";
static char __pyx_k__parse_format[] = "parse_format";
static char __pyx_k__parse_header[] = "parse_header";
static char __pyx_k__setreference[] = "setreference";
static char __pyx_k__write_header[] = "write_header";
static char __pyx_k__NT_NR_ALLELES[] = "NT_NR_ALLELES";
static char __pyx_k__StopIteration[] = "StopIteration";
static char __pyx_k___parse_header[] = "_parse_header";
static char __pyx_k__compare_calls[] = "compare_calls";
static char __pyx_k__convertGTback[] = "convertGTback";
static char __pyx_k__datagenerator[] = "datagenerator";
static char __pyx_k__format_format[] = "format_format";
static char __pyx_k__parse_heading[] = "parse_heading";
static char __pyx_k__parse_regions[] = "parse_regions";
static char __pyx_k__write_heading[] = "write_heading";
static char __pyx_k__V33_BAD_ALLELE[] = "V33_BAD_ALLELE";
static char __pyx_k__V40_BAD_ALLELE[] = "V40_BAD_ALLELE";
static char __pyx_k___sample2column[] = "_sample2column";
static char __pyx_k__have_deletions[] = "have_deletions";
static char __pyx_k___add_definition[] = "_add_definition";
static char __pyx_k___ignored_errors[] = "_ignored_errors";
static char __pyx_k__faref_leftflank[] = "faref_leftflank";
static char __pyx_k__POS_NOT_POSITIVE[] = "POS_NOT_POSITIVE";
static char __pyx_k__parse_formatdata[] = "parse_formatdata";
static char __pyx_k__ERROR_INFO_STRING[] = "ERROR_INFO_STRING";
static char __pyx_k__ERROR_UNKNOWN_KEY[] = "ERROR_UNKNOWN_KEY";
static char __pyx_k__POS_NOT_NUMERICAL[] = "POS_NOT_NUMERICAL";
static char __pyx_k__format_formatdata[] = "format_formatdata";
static char __pyx_k__FILTER_NOT_DEFINED[] = "FILTER_NOT_DEFINED";
static char __pyx_k__FORMAT_NOT_DEFINED[] = "FORMAT_NOT_DEFINED";
static char __pyx_k__QUAL_NOT_NUMERICAL[] = "QUAL_NOT_NUMERICAL";
static char __pyx_k__ZERO_LENGTH_ALLELE[] = "ZERO_LENGTH_ALLELE";
static char __pyx_k__ERROR_TRAILING_DATA[] = "ERROR_TRAILING_DATA";
static char __pyx_k__NT_PHASED_GENOTYPES[] = "NT_PHASED_GENOTYPES";
static char __pyx_k__NotImplementedError[] = "NotImplementedError";
static char __pyx_k__UNKNOWN_CHAR_IN_REF[] = "UNKNOWN_CHAR_IN_REF";
static PyObject *__pyx_kp_s_1;
static PyObject *__pyx_n_s_100;
static PyObject *__pyx_n_s_101;
static PyObject *__pyx_n_s_102;
static PyObject *__pyx_n_s_104;
static PyObject *__pyx_kp_s_105;
static PyObject *__pyx_kp_s_106;
static PyObject *__pyx_kp_s_11;
static PyObject *__pyx_n_s_114;
static PyObject *__pyx_kp_s_115;
static PyObject *__pyx_n_s_116;
static PyObject *__pyx_kp_s_118;
static PyObject *__pyx_n_s_121;
static PyObject *__pyx_kp_s_123;
static PyObject *__pyx_kp_s_125;
static PyObject *__pyx_kp_s_126;
static PyObject *__pyx_kp_s_128;
static PyObject *__pyx_kp_s_130;
static PyObject *__pyx_kp_s_134;
static PyObject *__pyx_kp_s_137;
static PyObject *__pyx_kp_s_139;
static PyObject *__pyx_kp_s_14;
static PyObject *__pyx_kp_s_140;
static PyObject *__pyx_kp_s_141;
static PyObject *__pyx_kp_s_142;
static PyObject *__pyx_kp_s_143;
static PyObject *__pyx_kp_s_144;
static PyObject *__pyx_kp_s_145;
static PyObject *__pyx_kp_s_146;
static PyObject *__pyx_kp_s_147;
static PyObject *__pyx_kp_s_148;
static PyObject *__pyx_kp_s_149;
static PyObject *__pyx_kp_s_150;
static PyObject *__pyx_kp_s_151;
static PyObject *__pyx_kp_s_152;
static PyObject *__pyx_kp_s_153;
static PyObject *__pyx_kp_s_154;
static PyObject *__pyx_kp_s_155;
static PyObject *__pyx_kp_s_156;
static PyObject *__pyx_kp_s_157;
static PyObject *__pyx_kp_s_158;
static PyObject *__pyx_kp_s_159;
static PyObject *__pyx_kp_s_160;
static PyObject *__pyx_kp_s_161;
static PyObject *__pyx_kp_s_162;
static PyObject *__pyx_kp_s_163;
static PyObject *__pyx_kp_s_164;
static PyObject *__pyx_kp_s_165;
static PyObject *__pyx_kp_s_166;
static PyObject *__pyx_kp_s_167;
static PyObject *__pyx_kp_s_168;
static PyObject *__pyx_kp_s_169;
static PyObject *__pyx_kp_s_170;
static PyObject *__pyx_kp_s_171;
static PyObject *__pyx_kp_s_172;
static PyObject *__pyx_n_s_18;
static PyObject *__pyx_kp_s_19;
static PyObject *__pyx_kp_s_2;
static PyObject *__pyx_n_s_20;
static PyObject *__pyx_kp_s_21;
static PyObject *__pyx_kp_s_24;
static PyObject *__pyx_kp_s_25;
static PyObject *__pyx_n_s_27;
static PyObject *__pyx_kp_s_28;
static PyObject *__pyx_kp_s_32;
static PyObject *__pyx_n_s_36;
static PyObject *__pyx_n_s_37;
static PyObject *__pyx_kp_s_38;
static PyObject *__pyx_kp_s_39;
static PyObject *__pyx_kp_s_4;
static PyObject *__pyx_kp_s_40;
static PyObject *__pyx_kp_s_41;
static PyObject *__pyx_n_s_50;
static PyObject *__pyx_kp_s_53;
static PyObject *__pyx_kp_s_54;
static PyObject *__pyx_kp_s_55;
static PyObject *__pyx_kp_s_56;
static PyObject *__pyx_n_s_57;
static PyObject *__pyx_kp_s_58;
static PyObject *__pyx_kp_s_59;
static PyObject *__pyx_kp_s_6;
static PyObject *__pyx_kp_s_60;
static PyObject *__pyx_kp_s_61;
static PyObject *__pyx_kp_s_64;
static PyObject *__pyx_kp_s_65;
static PyObject *__pyx_kp_s_66;
static PyObject *__pyx_kp_s_67;
static PyObject *__pyx_kp_s_68;
static PyObject *__pyx_kp_s_69;
static PyObject *__pyx_kp_s_70;
static PyObject *__pyx_kp_s_71;
static PyObject *__pyx_kp_s_72;
static PyObject *__pyx_kp_s_73;
static PyObject *__pyx_kp_s_74;
static PyObject *__pyx_kp_s_75;
static PyObject *__pyx_kp_s_76;
static PyObject *__pyx_kp_s_79;
static PyObject *__pyx_kp_s_8;
static PyObject *__pyx_kp_s_80;
static PyObject *__pyx_kp_s_81;
static PyObject *__pyx_n_s_82;
static PyObject *__pyx_kp_s_83;
static PyObject *__pyx_kp_s_84;
static PyObject *__pyx_kp_s_85;
static PyObject *__pyx_kp_s_88;
static PyObject *__pyx_kp_b_9;
static PyObject *__pyx_kp_s_9;
static PyObject *__pyx_n_s_90;
static PyObject *__pyx_kp_s_91;
static PyObject *__pyx_kp_s_92;
static PyObject *__pyx_n_s_93;
static PyObject *__pyx_kp_s_94;
static PyObject *__pyx_kp_s_95;
static PyObject *__pyx_n_s_96;
static PyObject *__pyx_kp_b__0;
static PyObject *__pyx_kp_s__0;
static PyObject *__pyx_n_s__A;
static PyObject *__pyx_n_s__ACGTN;
static PyObject *__pyx_n_s__ALT;
static PyObject *__pyx_n_s__BAD_GENOTYPE;
static PyObject *__pyx_n_s__CHROM;
static PyObject *__pyx_n_s__Character;
static PyObject *__pyx_n_s__D;
static PyObject *__pyx_n_s__DP;
static PyObject *__pyx_n_s__Description;
static PyObject *__pyx_n_s__EC;
static PyObject *__pyx_n_s__ERROR_INFO_STRING;
static PyObject *__pyx_n_s__ERROR_TRAILING_DATA;
static PyObject *__pyx_n_s__ERROR_UNKNOWN_KEY;
static PyObject *__pyx_n_s__Error;
static PyObject *__pyx_n_s__FILTER;
static PyObject *__pyx_n_s__FILTER_NOT_DEFINED;
static PyObject *__pyx_n_s__FORMAT;
static PyObject *__pyx_n_s__FORMAT_NOT_DEFINED;
static PyObject *__pyx_n_s__FT;
static PyObject *__pyx_n_s__Flag;
static PyObject *__pyx_n_s__Float;
static PyObject *__pyx_n_s__G;
static PyObject *__pyx_n_s__GL;
static PyObject *__pyx_n_s__GLE;
static PyObject *__pyx_n_s__GP;
static PyObject *__pyx_n_s__GQ;
static PyObject *__pyx_n_s__GT;
static PyObject *__pyx_n_s__GTdata;
static PyObject *__pyx_n_s__GTstring;
static PyObject *__pyx_n_s__Genotype;
static PyObject *__pyx_n_s__HQ;
static PyObject *__pyx_n_s__I;
static PyObject *__pyx_n_s__ID;
static PyObject *__pyx_n_s__INFO;
static PyObject *__pyx_n_s__Integer;
static PyObject *__pyx_n_s__KeyError;
static PyObject *__pyx_n_s__MISSING_REF;
static PyObject *__pyx_n_s__MQ;
static PyObject *__pyx_n_s__N;
static PyObject *__pyx_n_s__NT_ALLELES;
static PyObject *__pyx_n_s__NT_GENOTYPES;
static PyObject *__pyx_n_s__NT_NR_ALLELES;
static PyObject *__pyx_n_s__NT_NUMBER;
static PyObject *__pyx_n_s__NT_PHASED_GENOTYPES;
static PyObject *__pyx_n_s__NT_UNKNOWN;
static PyObject *__pyx_n_s__NotImplementedError;
static PyObject *__pyx_n_s__Number;
static PyObject *__pyx_n_b__PASS;
static PyObject *__pyx_n_s__PASS;
static PyObject *__pyx_n_s__PL;
static PyObject *__pyx_n_s__POS;
static PyObject *__pyx_n_s__POS_NOT_NUMERICAL;
static PyObject *__pyx_n_s__POS_NOT_POSITIVE;
static PyObject *__pyx_n_s__PQ;
static PyObject *__pyx_n_s__PS;
static PyObject *__pyx_n_s__QUAL;
static PyObject *__pyx_n_s__QUAL_NOT_NUMERICAL;
static PyObject *__pyx_n_s__REF;
static PyObject *__pyx_n_s__StopIteration;
static PyObject *__pyx_n_s__String;
static PyObject *__pyx_n_s__Tabixfile;
static PyObject *__pyx_n_s__Type;
static PyObject *__pyx_n_s__UNKNOWN_CHAR_IN_REF;
static PyObject *__pyx_n_s__V33_BAD_ALLELE;
static PyObject *__pyx_n_s__V33_BAD_REF;
static PyObject *__pyx_n_s__V40_BAD_ALLELE;
static PyObject *__pyx_n_s__VCF;
static PyObject *__pyx_n_s__VCFRecord;
static PyObject *__pyx_n_s__ValueError;
static PyObject *__pyx_n_s__WRONG_REF;
static PyObject *__pyx_n_s__Warning;
static PyObject *__pyx_n_s__ZERO_LENGTH_ALLELE;
static PyObject *__pyx_n_s____all__;
static PyObject *__pyx_n_s____dict__;
static PyObject *__pyx_n_s____init__;
static PyObject *__pyx_n_s____main__;
static PyObject *__pyx_n_s____test__;
static PyObject *__pyx_n_s___add_definition;
static PyObject *__pyx_n_s___copy;
static PyObject *__pyx_n_s___errors;
static PyObject *__pyx_n_s___filter;
static PyObject *__pyx_n_s___format;
static PyObject *__pyx_n_s___header;
static PyObject *__pyx_n_s___ignored_errors;
static PyObject *__pyx_n_s___info;
static PyObject *__pyx_n_s___leftalign;
static PyObject *__pyx_n_s___line;
static PyObject *__pyx_n_s___lineno;
static PyObject *__pyx_n_s___lines;
static PyObject *__pyx_n_s___parse;
static PyObject *__pyx_n_s___parse_header;
static PyObject *__pyx_n_s___reference;
static PyObject *__pyx_n_s___regions;
static PyObject *__pyx_n_s___required;
static PyObject *__pyx_n_s___sample2column;
static PyObject *__pyx_n_s___samples;
static PyObject *__pyx_n_s___version;
static PyObject *__pyx_n_s___warn_errors;
static PyObject *__pyx_n_s__a;
static PyObject *__pyx_n_s__add;
static PyObject *__pyx_n_s__addn;
static PyObject *__pyx_n_s__addns;
static PyObject *__pyx_n_s__allele;
static PyObject *__pyx_n_s__alleleRegEx;
static PyObject *__pyx_n_s__alt;
static PyObject *__pyx_n_s__alt1;
static PyObject *__pyx_n_s__alt2;
static PyObject *__pyx_n_s__bisect;
static PyObject *__pyx_n_s__blurp;
static PyObject *__pyx_n_s__buffer;
static PyObject *__pyx_n_s__c;
static PyObject *__pyx_n_s__chrom;
static PyObject *__pyx_n_s__collections;
static PyObject *__pyx_n_s__cols;
static PyObject *__pyx_n_s__compare_calls;
static PyObject *__pyx_n_s__compile;
static PyObject *__pyx_n_s__connect;
static PyObject *__pyx_n_s__convertGT;
static PyObject *__pyx_n_s__convertGTback;
static PyObject *__pyx_n_s__copy;
static PyObject *__pyx_n_s__cvcf;
static PyObject *__pyx_n_s__d;
static PyObject *__pyx_n_s__data;
static PyObject *__pyx_n_s__datagenerator;
static PyObject *__pyx_n_s__deepcopy;
static PyObject *__pyx_n_s__defaultdict;
static PyObject *__pyx_n_s__descr;
static PyObject *__pyx_n_s__description;
static PyObject *__pyx_n_s__dict;
static PyObject *__pyx_n_s__elts;
static PyObject *__pyx_n_s__end;
static PyObject *__pyx_n_s__endswith;
static PyObject *__pyx_n_s__enumerate;
static PyObject *__pyx_n_s__err;
static PyObject *__pyx_n_s__error;
static PyObject *__pyx_n_s__errorlabel;
static PyObject *__pyx_n_s__errorstring;
static PyObject *__pyx_n_s__errwarn;
static PyObject *__pyx_n_s__expected;
static PyObject *__pyx_n_s__f;
static PyObject *__pyx_n_s__fa;
static PyObject *__pyx_n_s__faref;
static PyObject *__pyx_n_s__faref_leftflank;
static PyObject *__pyx_n_s__fetch;
static PyObject *__pyx_n_s__fileformat;
static PyObject *__pyx_n_s__filename;
static PyObject *__pyx_n_s__filter;
static PyObject *__pyx_n_s__find;
static PyObject *__pyx_n_s__first;
static PyObject *__pyx_n_s__fmt;
static PyObject *__pyx_n_s__format;
static PyObject *__pyx_n_s__format_format;
static PyObject *__pyx_n_s__format_formatdata;
static PyObject *__pyx_n_s__formatdict;
static PyObject *__pyx_n_s__genexpr;
static PyObject *__pyx_n_s__get;
static PyObject *__pyx_n_s__get_expected;
static PyObject *__pyx_n_s__get_sequence;
static PyObject *__pyx_n_s__getfilter;
static PyObject *__pyx_n_s__getformat;
static PyObject *__pyx_n_s__getheader;
static PyObject *__pyx_n_s__getinfo;
static PyObject *__pyx_n_s__getsamples;
static PyObject *__pyx_n_s__gts;
static PyObject *__pyx_n_s__gtsRegEx;
static PyObject *__pyx_n_s__have_deletions;
static PyObject *__pyx_n_s__header;
static PyObject *__pyx_n_s__headings;
static PyObject *__pyx_n_s__i;
static PyObject *__pyx_n_s__id;
static PyObject *__pyx_n_s__idx;
static PyObject *__pyx_n_s__ielts;
static PyObject *__pyx_n_s__ignoreerror;
static PyObject *__pyx_n_s__info;
static PyObject *__pyx_n_s__inregion;
static PyObject *__pyx_n_s__itemgetter;
static PyObject *__pyx_n_s__itervalues;
static PyObject *__pyx_n_s__join;
static PyObject *__pyx_n_s__k;
static PyObject *__pyx_n_s__key;
static PyObject *__pyx_n_s__keys;
static PyObject *__pyx_n_s__l;
static PyObject *__pyx_n_s__label;
static PyObject *__pyx_n_s__last;
static PyObject *__pyx_n_s__last_line;
static PyObject *__pyx_n_s__left;
static PyObject *__pyx_n_s__leftalign;
static PyObject *__pyx_n_s__len;
static PyObject *__pyx_n_s__line;
static PyObject *__pyx_n_s__lineparse;
static PyObject *__pyx_n_s__lines;
static PyObject *__pyx_n_s__longest;
static PyObject *__pyx_n_s__map;
static PyObject *__pyx_n_s__match;
static PyObject *__pyx_n_s__min;
static PyObject *__pyx_n_s__missing;
static PyObject *__pyx_n_s__missingvalue;
static PyObject *__pyx_n_s__movable;
static PyObject *__pyx_n_s__n;
static PyObject *__pyx_n_s__na;
static PyObject *__pyx_n_s__namedtuple;
static PyObject *__pyx_n_s__newalts;
static PyObject *__pyx_n_s__nmb;
static PyObject *__pyx_n_s__number;
static PyObject *__pyx_n_s__numbertype;
static PyObject *__pyx_n_s__object;
static PyObject *__pyx_n_s__operator;
static PyObject *__pyx_n_s__opt;
static PyObject *__pyx_n_s__output;
static PyObject *__pyx_n_s__parse;
static PyObject *__pyx_n_s__parse_data;
static PyObject *__pyx_n_s__parse_format;
static PyObject *__pyx_n_s__parse_formatdata;
static PyObject *__pyx_n_s__parse_header;
static PyObject *__pyx_n_s__parse_heading;
static PyObject *__pyx_n_s__parse_regions;
static PyObject *__pyx_n_s__parser;
static PyObject *__pyx_n_s__pos;
static PyObject *__pyx_n_s__pos1;
static PyObject *__pyx_n_s__pos2;
static PyObject *__pyx_n_s__pysam;
static PyObject *__pyx_n_s__qual;
static PyObject *__pyx_n_s__r;
static PyObject *__pyx_n_s__range;
static PyObject *__pyx_n_s__re;
static PyObject *__pyx_n_s__record;
static PyObject *__pyx_n_s__ref;
static PyObject *__pyx_n_s__ref1;
static PyObject *__pyx_n_s__ref2;
static PyObject *__pyx_n_s__reference;
static PyObject *__pyx_n_s__region;
static PyObject *__pyx_n_s__regions;
static PyObject *__pyx_n_s__replace;
static PyObject *__pyx_n_s__required;
static PyObject *__pyx_n_s__rest;
static PyObject *__pyx_n_s__result;
static PyObject *__pyx_n_s__s;
static PyObject *__pyx_n_s__sample;
static PyObject *__pyx_n_s__samples;
static PyObject *__pyx_n_s__sdata;
static PyObject *__pyx_n_s__self;
static PyObject *__pyx_n_s__separator;
static PyObject *__pyx_n_s__sequence;
static PyObject *__pyx_n_s__setfilter;
static PyObject *__pyx_n_s__setformat;
static PyObject *__pyx_n_s__setheader;
static PyObject *__pyx_n_s__setinfo;
static PyObject *__pyx_n_s__setreference;
static PyObject *__pyx_n_s__setregions;
static PyObject *__pyx_n_s__setsamples;
static PyObject *__pyx_n_s__setversion;
static PyObject *__pyx_n_s__shortest;
static PyObject *__pyx_n_s__split;
static PyObject *__pyx_n_s__start;
static PyObject *__pyx_n_s__startswith;
static PyObject *__pyx_n_s__stream;
static PyObject *__pyx_n_s__string;
static PyObject *__pyx_n_s__strip;
static PyObject *__pyx_n_s__sys;
static PyObject *__pyx_n_s__t;
static PyObject *__pyx_n_s__tabixfile;
static PyObject *__pyx_n_s__type;
static PyObject *__pyx_n_s__upper;
static PyObject *__pyx_n_s__v;
static PyObject *__pyx_n_s__validate;
static PyObject *__pyx_n_s__value;
static PyObject *__pyx_n_s__values;
static PyObject *__pyx_n_s__var;
static PyObject *__pyx_n_s__vcf;
static PyObject *__pyx_n_s__vcffile;
static PyObject *__pyx_n_s__version;
static PyObject *__pyx_n_s__warnerror;
static PyObject *__pyx_n_s__write;
static PyObject *__pyx_n_s__write_data;
static PyObject *__pyx_n_s__write_header;
static PyObject *__pyx_n_s__write_heading;
static PyObject *__pyx_n_s__writeheader;
static PyObject *__pyx_n_s__x;
static PyObject *__pyx_n_s__y;
static PyObject *__pyx_n_s__zip;
static PyObject *__pyx_int_0;
static PyObject *__pyx_int_1;
static PyObject *__pyx_int_2;
static PyObject *__pyx_int_3;
static PyObject *__pyx_int_4;
static PyObject *__pyx_int_5;
static PyObject *__pyx_int_6;
static PyObject *__pyx_int_7;
static PyObject *__pyx_int_8;
static PyObject *__pyx_int_9;
static PyObject *__pyx_int_neg_1;
static PyObject *__pyx_int_10;
static PyObject *__pyx_int_11;
static PyObject *__pyx_int_12;
static PyObject *__pyx_int_13;
static PyObject *__pyx_int_14;
static PyObject *__pyx_int_15;
static PyObject *__pyx_int_16;
static PyObject *__pyx_int_17;
static PyObject *__pyx_int_18;
static PyObject *__pyx_int_19;
static PyObject *__pyx_int_20;
static PyObject *__pyx_int_21;
static PyObject *__pyx_int_22;
static PyObject *__pyx_int_23;
static PyObject *__pyx_int_24;
static PyObject *__pyx_int_25;
static PyObject *__pyx_int_26;
static PyObject *__pyx_int_27;
static PyObject *__pyx_int_28;
static PyObject *__pyx_int_29;
static PyObject *__pyx_int_30;
static PyObject *__pyx_int_31;
static PyObject *__pyx_int_32;
static PyObject *__pyx_int_33;
static PyObject *__pyx_int_40;
static PyObject *__pyx_int_100;
static PyObject *__pyx_int_3000000000;
static PyObject *__pyx_k_tuple_3;
static PyObject *__pyx_k_tuple_5;
static PyObject *__pyx_k_tuple_7;
static PyObject *__pyx_k_tuple_10;
static PyObject *__pyx_k_tuple_12;
static PyObject *__pyx_k_tuple_13;
static PyObject *__pyx_k_tuple_15;
static PyObject *__pyx_k_tuple_16;
static PyObject *__pyx_k_tuple_17;
static PyObject *__pyx_k_tuple_22;
static PyObject *__pyx_k_tuple_23;
static PyObject *__pyx_k_tuple_26;
static PyObject *__pyx_k_tuple_29;
static PyObject *__pyx_k_tuple_30;
static PyObject *__pyx_k_tuple_31;
static PyObject *__pyx_k_tuple_33;
static PyObject *__pyx_k_tuple_34;
static PyObject *__pyx_k_tuple_35;
static PyObject *__pyx_k_tuple_42;
static PyObject *__pyx_k_tuple_43;
static PyObject *__pyx_k_tuple_44;
static PyObject *__pyx_k_tuple_45;
static PyObject *__pyx_k_tuple_46;
static PyObject *__pyx_k_tuple_47;
static PyObject *__pyx_k_tuple_48;
static PyObject *__pyx_k_tuple_49;
static PyObject *__pyx_k_tuple_51;
static PyObject *__pyx_k_tuple_52;
static PyObject *__pyx_k_tuple_62;
static PyObject *__pyx_k_tuple_63;
static PyObject *__pyx_k_tuple_77;
static PyObject *__pyx_k_tuple_78;
static PyObject *__pyx_k_tuple_86;
static PyObject *__pyx_k_tuple_87;
static PyObject *__pyx_k_tuple_89;
static PyObject *__pyx_k_tuple_97;
static PyObject *__pyx_k_tuple_98;
static PyObject *__pyx_k_tuple_99;
static PyObject *__pyx_k_tuple_103;
static PyObject *__pyx_k_tuple_107;
static PyObject *__pyx_k_tuple_108;
static PyObject *__pyx_k_tuple_109;
static PyObject *__pyx_k_tuple_110;
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static PyObject *__pyx_k_tuple_112;
static PyObject *__pyx_k_tuple_113;
static PyObject *__pyx_k_tuple_117;
static PyObject *__pyx_k_tuple_119;
static PyObject *__pyx_k_tuple_120;
static PyObject *__pyx_k_tuple_122;
static PyObject *__pyx_k_tuple_124;
static PyObject *__pyx_k_tuple_127;
static PyObject *__pyx_k_tuple_129;
static PyObject *__pyx_k_tuple_131;
static PyObject *__pyx_k_tuple_132;
static PyObject *__pyx_k_tuple_135;
static PyObject *__pyx_k_tuple_138;
static PyObject *__pyx_k_tuple_173;
static PyObject *__pyx_k_tuple_175;
static PyObject *__pyx_k_tuple_177;
static PyObject *__pyx_k_tuple_178;
static PyObject *__pyx_k_tuple_180;
static PyObject *__pyx_k_tuple_182;
static PyObject *__pyx_k_tuple_184;
static PyObject *__pyx_k_tuple_186;
static PyObject *__pyx_k_tuple_188;
static PyObject *__pyx_k_tuple_190;
static PyObject *__pyx_k_tuple_192;
static PyObject *__pyx_k_tuple_194;
static PyObject *__pyx_k_tuple_196;
static PyObject *__pyx_k_tuple_198;
static PyObject *__pyx_k_tuple_200;
static PyObject *__pyx_k_tuple_202;
static PyObject *__pyx_k_tuple_204;
static PyObject *__pyx_k_tuple_206;
static PyObject *__pyx_k_tuple_208;
static PyObject *__pyx_k_tuple_210;
static PyObject *__pyx_k_tuple_212;
static PyObject *__pyx_k_tuple_214;
static PyObject *__pyx_k_tuple_216;
static PyObject *__pyx_k_tuple_218;
static PyObject *__pyx_k_tuple_220;
static PyObject *__pyx_k_tuple_222;
static PyObject *__pyx_k_tuple_224;
static PyObject *__pyx_k_tuple_226;
static PyObject *__pyx_k_tuple_228;
static PyObject *__pyx_k_tuple_230;
static PyObject *__pyx_k_tuple_232;
static PyObject *__pyx_k_tuple_234;
static PyObject *__pyx_k_tuple_236;
static PyObject *__pyx_k_tuple_238;
static PyObject *__pyx_k_tuple_240;
static PyObject *__pyx_k_tuple_242;
static PyObject *__pyx_k_tuple_244;
static PyObject *__pyx_k_tuple_246;
static PyObject *__pyx_k_tuple_248;
static PyObject *__pyx_k_tuple_250;
static PyObject *__pyx_k_tuple_252;
static PyObject *__pyx_k_tuple_254;
static PyObject *__pyx_k_tuple_256;
static PyObject *__pyx_k_tuple_257;
static PyObject *__pyx_k_codeobj_133;
static PyObject *__pyx_k_codeobj_136;
static PyObject *__pyx_k_codeobj_174;
static PyObject *__pyx_k_codeobj_176;
static PyObject *__pyx_k_codeobj_179;
static PyObject *__pyx_k_codeobj_181;
static PyObject *__pyx_k_codeobj_183;
static PyObject *__pyx_k_codeobj_185;
static PyObject *__pyx_k_codeobj_187;
static PyObject *__pyx_k_codeobj_189;
static PyObject *__pyx_k_codeobj_191;
static PyObject *__pyx_k_codeobj_193;
static PyObject *__pyx_k_codeobj_195;
static PyObject *__pyx_k_codeobj_197;
static PyObject *__pyx_k_codeobj_199;
static PyObject *__pyx_k_codeobj_201;
static PyObject *__pyx_k_codeobj_203;
static PyObject *__pyx_k_codeobj_205;
static PyObject *__pyx_k_codeobj_207;
static PyObject *__pyx_k_codeobj_209;
static PyObject *__pyx_k_codeobj_211;
static PyObject *__pyx_k_codeobj_213;
static PyObject *__pyx_k_codeobj_215;
static PyObject *__pyx_k_codeobj_217;
static PyObject *__pyx_k_codeobj_219;
static PyObject *__pyx_k_codeobj_221;
static PyObject *__pyx_k_codeobj_223;
static PyObject *__pyx_k_codeobj_225;
static PyObject *__pyx_k_codeobj_227;
static PyObject *__pyx_k_codeobj_229;
static PyObject *__pyx_k_codeobj_231;
static PyObject *__pyx_k_codeobj_233;
static PyObject *__pyx_k_codeobj_235;
static PyObject *__pyx_k_codeobj_237;
static PyObject *__pyx_k_codeobj_239;
static PyObject *__pyx_k_codeobj_241;
static PyObject *__pyx_k_codeobj_243;
static PyObject *__pyx_k_codeobj_245;
static PyObject *__pyx_k_codeobj_247;
static PyObject *__pyx_k_codeobj_249;
static PyObject *__pyx_k_codeobj_251;
static PyObject *__pyx_k_codeobj_253;
static PyObject *__pyx_k_codeobj_255;
static PyObject *__pyx_k_codeobj_258;

/* Python wrapper */
static PyObject *__pyx_pw_4cvcf_1get_sequence(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
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  {(char *)"info", __pyx_getprop_4cvcf_9VCFRecord_info, 0, 0, 0},
  {(char *)"format", __pyx_getprop_4cvcf_9VCFRecord_format, 0, 0, 0},
  {(char *)"samples", __pyx_getprop_4cvcf_9VCFRecord_samples, 0, 0, 0},
  {0, 0, 0, 0, 0}
};

static PyNumberMethods __pyx_tp_as_number_VCFRecord = {
  0, /*nb_add*/
  0, /*nb_subtract*/
  0, /*nb_multiply*/
  #if PY_MAJOR_VERSION < 3
  0, /*nb_divide*/
  #endif
  0, /*nb_remainder*/
  0, /*nb_divmod*/
  0, /*nb_power*/
  0, /*nb_negative*/
  0, /*nb_positive*/
  0, /*nb_absolute*/
  0, /*nb_nonzero*/
  0, /*nb_invert*/
  0, /*nb_lshift*/
  0, /*nb_rshift*/
  0, /*nb_and*/
  0, /*nb_xor*/
  0, /*nb_or*/
  #if PY_MAJOR_VERSION < 3
  0, /*nb_coerce*/
  #endif
  0, /*nb_int*/
  #if PY_MAJOR_VERSION < 3
  0, /*nb_long*/
  #else
  0, /*reserved*/
  #endif
  0, /*nb_float*/
  #if PY_MAJOR_VERSION < 3
  0, /*nb_oct*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*nb_hex*/
  #endif
  0, /*nb_inplace_add*/
  0, /*nb_inplace_subtract*/
  0, /*nb_inplace_multiply*/
  #if PY_MAJOR_VERSION < 3
  0, /*nb_inplace_divide*/
  #endif
  0, /*nb_inplace_remainder*/
  0, /*nb_inplace_power*/
  0, /*nb_inplace_lshift*/
  0, /*nb_inplace_rshift*/
  0, /*nb_inplace_and*/
  0, /*nb_inplace_xor*/
  0, /*nb_inplace_or*/
  0, /*nb_floor_divide*/
  0, /*nb_true_divide*/
  0, /*nb_inplace_floor_divide*/
  0, /*nb_inplace_true_divide*/
  #if PY_VERSION_HEX >= 0x02050000
  0, /*nb_index*/
  #endif
};

static PySequenceMethods __pyx_tp_as_sequence_VCFRecord = {
  __pyx_pw_4cvcf_9VCFRecord_7__len__, /*sq_length*/
  0, /*sq_concat*/
  0, /*sq_repeat*/
  __pyx_sq_item_4cvcf_VCFRecord, /*sq_item*/
  0, /*sq_slice*/
  0, /*sq_ass_item*/
  0, /*sq_ass_slice*/
  0, /*sq_contains*/
  0, /*sq_inplace_concat*/
  0, /*sq_inplace_repeat*/
};

static PyMappingMethods __pyx_tp_as_mapping_VCFRecord = {
  __pyx_pw_4cvcf_9VCFRecord_7__len__, /*mp_length*/
  __pyx_pw_4cvcf_9VCFRecord_9__getitem__, /*mp_subscript*/
  0, /*mp_ass_subscript*/
};

static PyBufferProcs __pyx_tp_as_buffer_VCFRecord = {
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getreadbuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getwritebuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getsegcount*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getcharbuffer*/
  #endif
  #if PY_VERSION_HEX >= 0x02060000
  0, /*bf_getbuffer*/
  #endif
  #if PY_VERSION_HEX >= 0x02060000
  0, /*bf_releasebuffer*/
  #endif
};

static PyTypeObject __pyx_type_4cvcf_VCFRecord = {
  PyVarObject_HEAD_INIT(0, 0)
  __Pyx_NAMESTR("cvcf.VCFRecord"), /*tp_name*/
  sizeof(struct __pyx_obj_4cvcf_VCFRecord), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_4cvcf_VCFRecord, /*tp_dealloc*/
  0, /*tp_print*/
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #else
  0, /*reserved*/
  #endif
  0, /*tp_repr*/
  &__pyx_tp_as_number_VCFRecord, /*tp_as_number*/
  &__pyx_tp_as_sequence_VCFRecord, /*tp_as_sequence*/
  &__pyx_tp_as_mapping_VCFRecord, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  &__pyx_tp_as_buffer_VCFRecord, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  __Pyx_DOCSTR("vcf record.\n\n    initialized from data and vcf meta \n    "), /*tp_doc*/
  __pyx_tp_traverse_4cvcf_VCFRecord, /*tp_traverse*/
  __pyx_tp_clear_4cvcf_VCFRecord, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_4cvcf_VCFRecord, /*tp_methods*/
  0, /*tp_members*/
  __pyx_getsets_4cvcf_VCFRecord, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  __pyx_pw_4cvcf_9VCFRecord_1__init__, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_4cvcf_VCFRecord, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  #if PY_VERSION_HEX >= 0x02060000
  0, /*tp_version_tag*/
  #endif
};

static PyObject *__pyx_tp_new_4cvcf_asVCFRecord(PyTypeObject *t, PyObject *a, PyObject *k) {
  struct __pyx_obj_4cvcf_asVCFRecord *p;
  PyObject *o = __pyx_ptype_6ctabix_Parser->tp_new(t, a, k);
  if (!o) return 0;
  p = ((struct __pyx_obj_4cvcf_asVCFRecord *)o);
  p->vcffile = Py_None; Py_INCREF(Py_None);
  return o;
}

static void __pyx_tp_dealloc_4cvcf_asVCFRecord(PyObject *o) {
  struct __pyx_obj_4cvcf_asVCFRecord *p = (struct __pyx_obj_4cvcf_asVCFRecord *)o;
  Py_XDECREF(p->vcffile);
  __pyx_ptype_6ctabix_Parser->tp_dealloc(o);
}

static int __pyx_tp_traverse_4cvcf_asVCFRecord(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_obj_4cvcf_asVCFRecord *p = (struct __pyx_obj_4cvcf_asVCFRecord *)o;
  if (__pyx_ptype_6ctabix_Parser->tp_traverse) {
    e = __pyx_ptype_6ctabix_Parser->tp_traverse(o, v, a); if (e) return e;
  }
  if (p->vcffile) {
    e = (*v)(p->vcffile, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear_4cvcf_asVCFRecord(PyObject *o) {
  struct __pyx_obj_4cvcf_asVCFRecord *p = (struct __pyx_obj_4cvcf_asVCFRecord *)o;
  PyObject* tmp;
  if (__pyx_ptype_6ctabix_Parser->tp_clear) {
    __pyx_ptype_6ctabix_Parser->tp_clear(o);
  }
  tmp = ((PyObject*)p->vcffile);
  p->vcffile = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  return 0;
}

static PyMethodDef __pyx_methods_4cvcf_asVCFRecord[] = {
  {0, 0, 0, 0}
};

static PyNumberMethods __pyx_tp_as_number_asVCFRecord = {
  0, /*nb_add*/
  0, /*nb_subtract*/
  0, /*nb_multiply*/
  #if PY_MAJOR_VERSION < 3
  0, /*nb_divide*/
  #endif
  0, /*nb_remainder*/
  0, /*nb_divmod*/
  0, /*nb_power*/
  0, /*nb_negative*/
  0, /*nb_positive*/
  0, /*nb_absolute*/
  0, /*nb_nonzero*/
  0, /*nb_invert*/
  0, /*nb_lshift*/
  0, /*nb_rshift*/
  0, /*nb_and*/
  0, /*nb_xor*/
  0, /*nb_or*/
  #if PY_MAJOR_VERSION < 3
  0, /*nb_coerce*/
  #endif
  0, /*nb_int*/
  #if PY_MAJOR_VERSION < 3
  0, /*nb_long*/
  #else
  0, /*reserved*/
  #endif
  0, /*nb_float*/
  #if PY_MAJOR_VERSION < 3
  0, /*nb_oct*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*nb_hex*/
  #endif
  0, /*nb_inplace_add*/
  0, /*nb_inplace_subtract*/
  0, /*nb_inplace_multiply*/
  #if PY_MAJOR_VERSION < 3
  0, /*nb_inplace_divide*/
  #endif
  0, /*nb_inplace_remainder*/
  0, /*nb_inplace_power*/
  0, /*nb_inplace_lshift*/
  0, /*nb_inplace_rshift*/
  0, /*nb_inplace_and*/
  0, /*nb_inplace_xor*/
  0, /*nb_inplace_or*/
  0, /*nb_floor_divide*/
  0, /*nb_true_divide*/
  0, /*nb_inplace_floor_divide*/
  0, /*nb_inplace_true_divide*/
  #if PY_VERSION_HEX >= 0x02050000
  0, /*nb_index*/
  #endif
};

static PySequenceMethods __pyx_tp_as_sequence_asVCFRecord = {
  0, /*sq_length*/
  0, /*sq_concat*/
  0, /*sq_repeat*/
  0, /*sq_item*/
  0, /*sq_slice*/
  0, /*sq_ass_item*/
  0, /*sq_ass_slice*/
  0, /*sq_contains*/
  0, /*sq_inplace_concat*/
  0, /*sq_inplace_repeat*/
};

static PyMappingMethods __pyx_tp_as_mapping_asVCFRecord = {
  0, /*mp_length*/
  0, /*mp_subscript*/
  0, /*mp_ass_subscript*/
};

static PyBufferProcs __pyx_tp_as_buffer_asVCFRecord = {
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getreadbuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getwritebuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getsegcount*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getcharbuffer*/
  #endif
  #if PY_VERSION_HEX >= 0x02060000
  0, /*bf_getbuffer*/
  #endif
  #if PY_VERSION_HEX >= 0x02060000
  0, /*bf_releasebuffer*/
  #endif
};

static PyTypeObject __pyx_type_4cvcf_asVCFRecord = {
  PyVarObject_HEAD_INIT(0, 0)
  __Pyx_NAMESTR("cvcf.asVCFRecord"), /*tp_name*/
  sizeof(struct __pyx_obj_4cvcf_asVCFRecord), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_4cvcf_asVCFRecord, /*tp_dealloc*/
  0, /*tp_print*/
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #else
  0, /*reserved*/
  #endif
  0, /*tp_repr*/
  &__pyx_tp_as_number_asVCFRecord, /*tp_as_number*/
  &__pyx_tp_as_sequence_asVCFRecord, /*tp_as_sequence*/
  &__pyx_tp_as_mapping_asVCFRecord, /*tp_as_mapping*/
  0, /*tp_hash*/
  __pyx_pw_4cvcf_11asVCFRecord_3__call__, /*tp_call*/
  0, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  &__pyx_tp_as_buffer_asVCFRecord, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  __Pyx_DOCSTR("converts a :term:`tabix row` into a VCF record."), /*tp_doc*/
  __pyx_tp_traverse_4cvcf_asVCFRecord, /*tp_traverse*/
  __pyx_tp_clear_4cvcf_asVCFRecord, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_4cvcf_asVCFRecord, /*tp_methods*/
  0, /*tp_members*/
  0, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  __pyx_pw_4cvcf_11asVCFRecord_1__init__, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_4cvcf_asVCFRecord, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  #if PY_VERSION_HEX >= 0x02060000
  0, /*tp_version_tag*/
  #endif
};

static PyObject *__pyx_tp_new_4cvcf___pyx_scope_struct__parse_data(PyTypeObject *t, PyObject *a, PyObject *k) {
  struct __pyx_obj_4cvcf___pyx_scope_struct__parse_data *p;
  PyObject *o = (*t->tp_alloc)(t, 0);
  if (!o) return 0;
  p = ((struct __pyx_obj_4cvcf___pyx_scope_struct__parse_data *)o);
  p->__pyx_v_alt = 0;
  return o;
}

static void __pyx_tp_dealloc_4cvcf___pyx_scope_struct__parse_data(PyObject *o) {
  struct __pyx_obj_4cvcf___pyx_scope_struct__parse_data *p = (struct __pyx_obj_4cvcf___pyx_scope_struct__parse_data *)o;
  Py_XDECREF(p->__pyx_v_alt);
  (*Py_TYPE(o)->tp_free)(o);
}

static int __pyx_tp_traverse_4cvcf___pyx_scope_struct__parse_data(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_obj_4cvcf___pyx_scope_struct__parse_data *p = (struct __pyx_obj_4cvcf___pyx_scope_struct__parse_data *)o;
  if (p->__pyx_v_alt) {
    e = (*v)(p->__pyx_v_alt, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear_4cvcf___pyx_scope_struct__parse_data(PyObject *o) {
  struct __pyx_obj_4cvcf___pyx_scope_struct__parse_data *p = (struct __pyx_obj_4cvcf___pyx_scope_struct__parse_data *)o;
  PyObject* tmp;
  tmp = ((PyObject*)p->__pyx_v_alt);
  p->__pyx_v_alt = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  return 0;
}

static PyMethodDef __pyx_methods_4cvcf___pyx_scope_struct__parse_data[] = {
  {0, 0, 0, 0}
};

static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct__parse_data = {
  0, /*nb_add*/
  0, /*nb_subtract*/
  0, /*nb_multiply*/
  #if PY_MAJOR_VERSION < 3
  0, /*nb_divide*/
  #endif
  0, /*nb_remainder*/
  0, /*nb_divmod*/
  0, /*nb_power*/
  0, /*nb_negative*/
  0, /*nb_positive*/
  0, /*nb_absolute*/
  0, /*nb_nonzero*/
  0, /*nb_invert*/
  0, /*nb_lshift*/
  0, /*nb_rshift*/
  0, /*nb_and*/
  0, /*nb_xor*/
  0, /*nb_or*/
  #if PY_MAJOR_VERSION < 3
  0, /*nb_coerce*/
  #endif
  0, /*nb_int*/
  #if PY_MAJOR_VERSION < 3
  0, /*nb_long*/
  #else
  0, /*reserved*/
  #endif
  0, /*nb_float*/
  #if PY_MAJOR_VERSION < 3
  0, /*nb_oct*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*nb_hex*/
  #endif
  0, /*nb_inplace_add*/
  0, /*nb_inplace_subtract*/
  0, /*nb_inplace_multiply*/
  #if PY_MAJOR_VERSION < 3
  0, /*nb_inplace_divide*/
  #endif
  0, /*nb_inplace_remainder*/
  0, /*nb_inplace_power*/
  0, /*nb_inplace_lshift*/
  0, /*nb_inplace_rshift*/
  0, /*nb_inplace_and*/
  0, /*nb_inplace_xor*/
  0, /*nb_inplace_or*/
  0, /*nb_floor_divide*/
  0, /*nb_true_divide*/
  0, /*nb_inplace_floor_divide*/
  0, /*nb_inplace_true_divide*/
  #if PY_VERSION_HEX >= 0x02050000
  0, /*nb_index*/
  #endif
};

static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct__parse_data = {
  0, /*sq_length*/
  0, /*sq_concat*/
  0, /*sq_repeat*/
  0, /*sq_item*/
  0, /*sq_slice*/
  0, /*sq_ass_item*/
  0, /*sq_ass_slice*/
  0, /*sq_contains*/
  0, /*sq_inplace_concat*/
  0, /*sq_inplace_repeat*/
};

static PyMappingMethods __pyx_tp_as_mapping___pyx_scope_struct__parse_data = {
  0, /*mp_length*/
  0, /*mp_subscript*/
  0, /*mp_ass_subscript*/
};

static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct__parse_data = {
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getreadbuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getwritebuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getsegcount*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getcharbuffer*/
  #endif
  #if PY_VERSION_HEX >= 0x02060000
  0, /*bf_getbuffer*/
  #endif
  #if PY_VERSION_HEX >= 0x02060000
  0, /*bf_releasebuffer*/
  #endif
};

static PyTypeObject __pyx_type_4cvcf___pyx_scope_struct__parse_data = {
  PyVarObject_HEAD_INIT(0, 0)
  __Pyx_NAMESTR("cvcf.__pyx_scope_struct__parse_data"), /*tp_name*/
  sizeof(struct __pyx_obj_4cvcf___pyx_scope_struct__parse_data), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_4cvcf___pyx_scope_struct__parse_data, /*tp_dealloc*/
  0, /*tp_print*/
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #else
  0, /*reserved*/
  #endif
  0, /*tp_repr*/
  &__pyx_tp_as_number___pyx_scope_struct__parse_data, /*tp_as_number*/
  &__pyx_tp_as_sequence___pyx_scope_struct__parse_data, /*tp_as_sequence*/
  &__pyx_tp_as_mapping___pyx_scope_struct__parse_data, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  &__pyx_tp_as_buffer___pyx_scope_struct__parse_data, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  0, /*tp_doc*/
  __pyx_tp_traverse_4cvcf___pyx_scope_struct__parse_data, /*tp_traverse*/
  __pyx_tp_clear_4cvcf___pyx_scope_struct__parse_data, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_4cvcf___pyx_scope_struct__parse_data, /*tp_methods*/
  0, /*tp_members*/
  0, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  0, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_4cvcf___pyx_scope_struct__parse_data, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  #if PY_VERSION_HEX >= 0x02060000
  0, /*tp_version_tag*/
  #endif
};

static PyObject *__pyx_tp_new_4cvcf___pyx_scope_struct_1_genexpr(PyTypeObject *t, PyObject *a, PyObject *k) {
  struct __pyx_obj_4cvcf___pyx_scope_struct_1_genexpr *p;
  PyObject *o = (*t->tp_alloc)(t, 0);
  if (!o) return 0;
  p = ((struct __pyx_obj_4cvcf___pyx_scope_struct_1_genexpr *)o);
  p->__pyx_outer_scope = 0;
  p->__pyx_v_allele = 0;
  p->__pyx_t_0 = 0;
  return o;
}

static void __pyx_tp_dealloc_4cvcf___pyx_scope_struct_1_genexpr(PyObject *o) {
  struct __pyx_obj_4cvcf___pyx_scope_struct_1_genexpr *p = (struct __pyx_obj_4cvcf___pyx_scope_struct_1_genexpr *)o;
  Py_XDECREF(((PyObject *)p->__pyx_outer_scope));
  Py_XDECREF(p->__pyx_v_allele);
  Py_XDECREF(p->__pyx_t_0);
  (*Py_TYPE(o)->tp_free)(o);
}

static int __pyx_tp_traverse_4cvcf___pyx_scope_struct_1_genexpr(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_obj_4cvcf___pyx_scope_struct_1_genexpr *p = (struct __pyx_obj_4cvcf___pyx_scope_struct_1_genexpr *)o;
  if (p->__pyx_outer_scope) {
    e = (*v)(((PyObject*)p->__pyx_outer_scope), a); if (e) return e;
  }
  if (p->__pyx_v_allele) {
    e = (*v)(p->__pyx_v_allele, a); if (e) return e;
  }
  if (p->__pyx_t_0) {
    e = (*v)(p->__pyx_t_0, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear_4cvcf___pyx_scope_struct_1_genexpr(PyObject *o) {
  struct __pyx_obj_4cvcf___pyx_scope_struct_1_genexpr *p = (struct __pyx_obj_4cvcf___pyx_scope_struct_1_genexpr *)o;
  PyObject* tmp;
  tmp = ((PyObject*)p->__pyx_outer_scope);
  p->__pyx_outer_scope = ((struct __pyx_obj_4cvcf___pyx_scope_struct__parse_data *)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->__pyx_v_allele);
  p->__pyx_v_allele = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
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 * 
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 *         assert line.startswith('#')
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 *         headings = line[1:].split('\t')
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 *         # test for 8, as FORMAT field might be missing
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 *             self.error(line,self.ERROR_TRAILING_DATA,values[-1])
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 *         if cols[5] == ".": qual = -1
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 *                 elts = blurp.split('=')
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 *         # check: all filters are defined
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 *             if line.startswith('##'):
 *                 self.parse_header( line.strip() )
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 *                 self.parse_heading( line.strip() )
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 *         if len(line.strip()) > 0:
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 * 
 *     def setversion(self, version):
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 *         '''
 * 
 *         raise NotImplementedError( "needs to be checked" )             # <<<<<<<<<<<<<<
 * 
 *         chrom, pos = record.chrom, record.pos
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 * 
 * gtsRegEx = re.compile("[|/\\\\]")             # <<<<<<<<<<<<<<
 * alleleRegEx = re.compile('^[ACGTN]+$')
 * 
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 * 
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 * 
 * # Utility function.  Uses 0-based coordinates
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 * 
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 *     # obtain sequence from .fa file, without truncation
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 * 
 * # Utility function.  Parses a region string
 * def parse_regions( string ):             # <<<<<<<<<<<<<<
 *     result = []
 *     for r in string.split(','):
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arg_passed_twice:
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invalid_keyword_type:
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invalid_keyword:
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bad:
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#if PY_MAJOR_VERSION < 3
static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb,
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raise_error:
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        PyObject* tmp_tb = tstate->curexc_traceback;
        if (tb != tmp_tb) {
            Py_INCREF(tb);
            tstate->curexc_traceback = tb;
            Py_XDECREF(tmp_tb);
        }
    }
bad:
    return;
}
#endif

static double __Pyx__PyObject_AsDouble(PyObject* obj) {
    PyObject* float_value;
    if (Py_TYPE(obj)->tp_as_number && Py_TYPE(obj)->tp_as_number->nb_float) {
        return PyFloat_AsDouble(obj);
    } else if (PyUnicode_CheckExact(obj) || PyBytes_CheckExact(obj)) {
#if PY_MAJOR_VERSION >= 3
        float_value = PyFloat_FromString(obj);
#else
        float_value = PyFloat_FromString(obj, 0);
#endif
    } else {
        PyObject* args = PyTuple_New(1);
        if (unlikely(!args)) goto bad;
        PyTuple_SET_ITEM(args, 0, obj);
        float_value = PyObject_Call((PyObject*)&PyFloat_Type, args, 0);
        PyTuple_SET_ITEM(args, 0, 0);
        Py_DECREF(args);
    }
    if (likely(float_value)) {
        double value = PyFloat_AS_DOUBLE(float_value);
        Py_DECREF(float_value);
        return value;
    }
bad:
    return (double)-1;
}

static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname) {
    PyErr_Format(PyExc_UnboundLocalError, "local variable '%s' referenced before assignment", varname);
}

static CYTHON_INLINE void __Pyx_RaiseNoneIndexingError(void) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' object is unsubscriptable");
}

static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) {
    PyErr_Format(PyExc_ValueError,
                 "need more than %"PY_FORMAT_SIZE_T"d value%s to unpack",
                 index, (index == 1) ? "" : "s");
}

static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) {
    PyErr_Format(PyExc_ValueError,
                 "too many values to unpack (expected %"PY_FORMAT_SIZE_T"d)", expected);
}

static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) {
    if (unlikely(retval)) {
        Py_DECREF(retval);
        __Pyx_RaiseTooManyValuesError(expected);
        return -1;
    } else if (PyErr_Occurred()) {
        if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) {
            PyErr_Clear();
            return 0;
        } else {
            return -1;
        }
    }
    return 0;
}

static CYTHON_INLINE Py_ssize_t __Pyx_div_Py_ssize_t(Py_ssize_t a, Py_ssize_t b) {
    Py_ssize_t q = a / b;
    Py_ssize_t r = a - q*b;
    q -= ((r != 0) & ((r ^ b) < 0));
    return q;
}



static CYTHON_INLINE void __Pyx_RaiseClosureNameError(const char *varname) {
    PyErr_Format(PyExc_NameError, "free variable '%s' referenced before assignment in enclosing scope", varname);
}

static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value, PyObject **tb) {
    PyThreadState *tstate = PyThreadState_GET();
    *type = tstate->exc_type;
    *value = tstate->exc_value;
    *tb = tstate->exc_traceback;
    Py_XINCREF(*type);
    Py_XINCREF(*value);
    Py_XINCREF(*tb);
}
static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb) {
    PyObject *tmp_type, *tmp_value, *tmp_tb;
    PyThreadState *tstate = PyThreadState_GET();
    tmp_type = tstate->exc_type;
    tmp_value = tstate->exc_value;
    tmp_tb = tstate->exc_traceback;
    tstate->exc_type = type;
    tstate->exc_value = value;
    tstate->exc_traceback = tb;
    Py_XDECREF(tmp_type);
    Py_XDECREF(tmp_value);
    Py_XDECREF(tmp_tb);
}

static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, long level) {
    PyObject *py_import = 0;
    PyObject *empty_list = 0;
    PyObject *module = 0;
    PyObject *global_dict = 0;
    PyObject *empty_dict = 0;
    PyObject *list;
    py_import = __Pyx_GetAttrString(__pyx_b, "__import__");
    if (!py_import)
        goto bad;
    if (from_list)
        list = from_list;
    else {
        empty_list = PyList_New(0);
        if (!empty_list)
            goto bad;
        list = empty_list;
    }
    global_dict = PyModule_GetDict(__pyx_m);
    if (!global_dict)
        goto bad;
    empty_dict = PyDict_New();
    if (!empty_dict)
        goto bad;
    #if PY_VERSION_HEX >= 0x02050000
    {
        #if PY_MAJOR_VERSION >= 3
        if (level == -1) {
            if (strchr(__Pyx_MODULE_NAME, '.')) {
                /* try package relative import first */
                PyObject *py_level = PyInt_FromLong(1);
                if (!py_level)
                    goto bad;
                module = PyObject_CallFunctionObjArgs(py_import,
                    name, global_dict, empty_dict, list, py_level, NULL);
                Py_DECREF(py_level);
                if (!module) {
                    if (!PyErr_ExceptionMatches(PyExc_ImportError))
                        goto bad;
                    PyErr_Clear();
                }
            }
            level = 0; /* try absolute import on failure */
        }
        #endif
        if (!module) {
            PyObject *py_level = PyInt_FromLong(level);
            if (!py_level)
                goto bad;
            module = PyObject_CallFunctionObjArgs(py_import,
                name, global_dict, empty_dict, list, py_level, NULL);
            Py_DECREF(py_level);
        }
    }
    #else
    if (level>0) {
        PyErr_SetString(PyExc_RuntimeError, "Relative import is not supported for Python <=2.4.");
        goto bad;
    }
    module = PyObject_CallFunctionObjArgs(py_import,
        name, global_dict, empty_dict, list, NULL);
    #endif
bad:
    Py_XDECREF(empty_list);
    Py_XDECREF(py_import);
    Py_XDECREF(empty_dict);
    return module;
}

static CYTHON_INLINE void __Pyx_RaiseImportError(PyObject *name) {
#if PY_MAJOR_VERSION < 3
    PyErr_Format(PyExc_ImportError, "cannot import name %.230s",
                 PyString_AsString(name));
#else
    PyErr_Format(PyExc_ImportError, "cannot import name %S", name);
#endif
}

static PyObject *__Pyx_FindPy2Metaclass(PyObject *bases) {
    PyObject *metaclass;
    /* Default metaclass */
#if PY_MAJOR_VERSION < 3
    if (PyTuple_Check(bases) && PyTuple_GET_SIZE(bases) > 0) {
        PyObject *base = PyTuple_GET_ITEM(bases, 0);
        metaclass = PyObject_GetAttrString(base, (char *)"__class__");
        if (!metaclass) {
            PyErr_Clear();
            metaclass = (PyObject*) Py_TYPE(base);
        }
    } else {
        metaclass = (PyObject *) &PyClass_Type;
    }
#else
    if (PyTuple_Check(bases) && PyTuple_GET_SIZE(bases) > 0) {
        PyObject *base = PyTuple_GET_ITEM(bases, 0);
        metaclass = (PyObject*) Py_TYPE(base);
    } else {
        metaclass = (PyObject *) &PyType_Type;
    }
#endif
    Py_INCREF(metaclass);
    return metaclass;
}

static PyObject *__Pyx_CreateClass(PyObject *bases, PyObject *dict, PyObject *name,
                                   PyObject *modname) {
    PyObject *result;
    PyObject *metaclass;
    if (PyDict_SetItemString(dict, "__module__", modname) < 0)
        return NULL;
    /* Python2 __metaclass__ */
    metaclass = PyDict_GetItemString(dict, "__metaclass__");
    if (metaclass) {
        Py_INCREF(metaclass);
    } else {
        metaclass = __Pyx_FindPy2Metaclass(bases);
    }
    result = PyObject_CallFunctionObjArgs(metaclass, name, bases, dict, NULL);
    Py_DECREF(metaclass);
    return result;
}

static PyObject *
__Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *closure)
{
    if (op->func_doc == NULL && op->func.m_ml->ml_doc) {
#if PY_MAJOR_VERSION >= 3
        op->func_doc = PyUnicode_FromString(op->func.m_ml->ml_doc);
#else
        op->func_doc = PyString_FromString(op->func.m_ml->ml_doc);
#endif
    }
    if (op->func_doc == 0) {
        Py_INCREF(Py_None);
        return Py_None;
    }
    Py_INCREF(op->func_doc);
    return op->func_doc;
}
static int
__Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value)
{
    PyObject *tmp = op->func_doc;
    if (value == NULL)
        op->func_doc = Py_None; /* Mark as deleted */
    else
        op->func_doc = value;
    Py_INCREF(op->func_doc);
    Py_XDECREF(tmp);
    return 0;
}
static PyObject *
__Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op)
{
    if (op->func_name == NULL) {
#if PY_MAJOR_VERSION >= 3
        op->func_name = PyUnicode_InternFromString(op->func.m_ml->ml_name);
#else
        op->func_name = PyString_InternFromString(op->func.m_ml->ml_name);
#endif
    }
    Py_INCREF(op->func_name);
    return op->func_name;
}
static int
__Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value)
{
    PyObject *tmp;
#if PY_MAJOR_VERSION >= 3
    if (value == NULL || !PyUnicode_Check(value)) {
#else
    if (value == NULL || !PyString_Check(value)) {
#endif
        PyErr_SetString(PyExc_TypeError,
                        "__name__ must be set to a string object");
        return -1;
    }
    tmp = op->func_name;
    Py_INCREF(value);
    op->func_name = value;
    Py_XDECREF(tmp);
    return 0;
}
static PyObject *
__Pyx_CyFunction_get_self(__pyx_CyFunctionObject *m, CYTHON_UNUSED void *closure)
{
    PyObject *self;
    self = m->func_closure;
    if (self == NULL)
        self = Py_None;
    Py_INCREF(self);
    return self;
}
static PyObject *
__Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op)
{
    if (op->func_dict == NULL) {
        op->func_dict = PyDict_New();
        if (op->func_dict == NULL)
            return NULL;
    }
    Py_INCREF(op->func_dict);
    return op->func_dict;
}
static int
__Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value)
{
    PyObject *tmp;
    if (value == NULL) {
        PyErr_SetString(PyExc_TypeError,
               "function's dictionary may not be deleted");
        return -1;
    }
    if (!PyDict_Check(value)) {
        PyErr_SetString(PyExc_TypeError,
               "setting function's dictionary to a non-dict");
        return -1;
    }
    tmp = op->func_dict;
    Py_INCREF(value);
    op->func_dict = value;
    Py_XDECREF(tmp);
    return 0;
}
static PyObject *
__Pyx_CyFunction_get_globals(CYTHON_UNUSED __pyx_CyFunctionObject *op)
{
    PyObject* dict = PyModule_GetDict(__pyx_m);
    Py_XINCREF(dict);
    return dict;
}
static PyObject *
__Pyx_CyFunction_get_closure(CYTHON_UNUSED __pyx_CyFunctionObject *op)
{
    Py_INCREF(Py_None);
    return Py_None;
}
static PyObject *
__Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op)
{
    PyObject* result = (op->func_code) ? op->func_code : Py_None;
    Py_INCREF(result);
    return result;
}
static PyObject *
__Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op)
{
    if (op->defaults_tuple) {
        Py_INCREF(op->defaults_tuple);
        return op->defaults_tuple;
    }
    if (op->defaults_getter) {
        PyObject *res = op->defaults_getter((PyObject *) op);
        if (res) {
            Py_INCREF(res);
            op->defaults_tuple = res;
        }
        return res;
    }
    Py_INCREF(Py_None);
    return Py_None;
}
static PyGetSetDef __pyx_CyFunction_getsets[] = {
    {(char *) "func_doc", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0},
    {(char *) "__doc__",  (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0},
    {(char *) "func_name", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0},
    {(char *) "__name__", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0},
    {(char *) "__self__", (getter)__Pyx_CyFunction_get_self, 0, 0, 0},
    {(char *) "func_dict", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0},
    {(char *) "__dict__", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0},
    {(char *) "func_globals", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0},
    {(char *) "__globals__", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0},
    {(char *) "func_closure", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0},
    {(char *) "__closure__", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0},
    {(char *) "func_code", (getter)__Pyx_CyFunction_get_code, 0, 0, 0},
    {(char *) "__code__", (getter)__Pyx_CyFunction_get_code, 0, 0, 0},
    {(char *) "func_defaults", (getter)__Pyx_CyFunction_get_defaults, 0, 0, 0},
    {(char *) "__defaults__", (getter)__Pyx_CyFunction_get_defaults, 0, 0, 0},
    {0, 0, 0, 0, 0}
};
#ifndef PY_WRITE_RESTRICTED /* < Py2.5 */
#define PY_WRITE_RESTRICTED WRITE_RESTRICTED
#endif
static PyMemberDef __pyx_CyFunction_members[] = {
    {(char *) "__module__", T_OBJECT, offsetof(__pyx_CyFunctionObject, func.m_module), PY_WRITE_RESTRICTED, 0},
    {0, 0, 0,  0, 0}
};
static PyObject *
__Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, CYTHON_UNUSED PyObject *args)
{
#if PY_MAJOR_VERSION >= 3
    return PyUnicode_FromString(m->func.m_ml->ml_name);
#else
    return PyString_FromString(m->func.m_ml->ml_name);
#endif
}
static PyMethodDef __pyx_CyFunction_methods[] = {
    {__Pyx_NAMESTR("__reduce__"), (PyCFunction)__Pyx_CyFunction_reduce, METH_VARARGS, 0},
    {0, 0, 0, 0}
};
static PyObject *__Pyx_CyFunction_New(PyTypeObject *type, PyMethodDef *ml, int flags,
                                      PyObject *closure, PyObject *module, PyObject* code) {
    __pyx_CyFunctionObject *op = PyObject_GC_New(__pyx_CyFunctionObject, type);
    if (op == NULL)
        return NULL;
    op->flags = flags;
    op->func_weakreflist = NULL;
    op->func.m_ml = ml;
    op->func.m_self = (PyObject *) op;
    Py_XINCREF(closure);
    op->func_closure = closure;
    Py_XINCREF(module);
    op->func.m_module = module;
    op->func_dict = NULL;
    op->func_name = NULL;
    op->func_doc = NULL;
    op->func_classobj = NULL;
    Py_XINCREF(code);
    op->func_code = code;
    op->defaults_pyobjects = 0;
    op->defaults = NULL;
    op->defaults_tuple = NULL;
    op->defaults_getter = NULL;
    PyObject_GC_Track(op);
    return (PyObject *) op;
}
static int
__Pyx_CyFunction_clear(__pyx_CyFunctionObject *m)
{
    Py_CLEAR(m->func_closure);
    Py_CLEAR(m->func.m_module);
    Py_CLEAR(m->func_dict);
    Py_CLEAR(m->func_name);
    Py_CLEAR(m->func_doc);
    Py_CLEAR(m->func_code);
    Py_CLEAR(m->func_classobj);
    Py_CLEAR(m->defaults_tuple);
    if (m->defaults) {
        PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m);
        int i;
        for (i = 0; i < m->defaults_pyobjects; i++)
            Py_XDECREF(pydefaults[i]);
        PyMem_Free(m->defaults);
        m->defaults = NULL;
    }
    return 0;
}
static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m)
{
    PyObject_GC_UnTrack(m);
    if (m->func_weakreflist != NULL)
        PyObject_ClearWeakRefs((PyObject *) m);
    __Pyx_CyFunction_clear(m);
    PyObject_GC_Del(m);
}
static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg)
{
    Py_VISIT(m->func_closure);
    Py_VISIT(m->func.m_module);
    Py_VISIT(m->func_dict);
    Py_VISIT(m->func_name);
    Py_VISIT(m->func_doc);
    Py_VISIT(m->func_code);
    Py_VISIT(m->func_classobj);
    Py_VISIT(m->defaults_tuple);
    if (m->defaults) {
        PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m);
        int i;
        for (i = 0; i < m->defaults_pyobjects; i++)
            Py_VISIT(pydefaults[i]);
    }
    return 0;
}
static PyObject *__Pyx_CyFunction_descr_get(PyObject *func, PyObject *obj, PyObject *type)
{
    __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
    if (m->flags & __Pyx_CYFUNCTION_STATICMETHOD) {
        Py_INCREF(func);
        return func;
    }
    if (m->flags & __Pyx_CYFUNCTION_CLASSMETHOD) {
        if (type == NULL)
            type = (PyObject *)(Py_TYPE(obj));
        return PyMethod_New(func,
                            type, (PyObject *)(Py_TYPE(type)));
    }
    if (obj == Py_None)
        obj = NULL;
    return PyMethod_New(func, obj, type);
}
static PyObject*
__Pyx_CyFunction_repr(__pyx_CyFunctionObject *op)
{
    PyObject *func_name = __Pyx_CyFunction_get_name(op);
#if PY_MAJOR_VERSION >= 3
    return PyUnicode_FromFormat("<cyfunction %U at %p>",
                                func_name, (void *)op);
#else
    return PyString_FromFormat("<cyfunction %s at %p>",
                               PyString_AsString(func_name), (void *)op);
#endif
}
static PyTypeObject __pyx_CyFunctionType_type = {
    PyVarObject_HEAD_INIT(0, 0)
    __Pyx_NAMESTR("cython_function_or_method"), /*tp_name*/
    sizeof(__pyx_CyFunctionObject),   /*tp_basicsize*/
    0,                                  /*tp_itemsize*/
    (destructor) __Pyx_CyFunction_dealloc, /*tp_dealloc*/
    0,                                  /*tp_print*/
    0,                                  /*tp_getattr*/
    0,                                  /*tp_setattr*/
#if PY_MAJOR_VERSION < 3
    0,                                  /*tp_compare*/
#else
    0,                                  /*reserved*/
#endif
    (reprfunc) __Pyx_CyFunction_repr,   /*tp_repr*/
    0,                                  /*tp_as_number*/
    0,                                  /*tp_as_sequence*/
    0,                                  /*tp_as_mapping*/
    0,                                  /*tp_hash*/
    __Pyx_PyCFunction_Call,             /*tp_call*/
    0,                                  /*tp_str*/
    0,                                  /*tp_getattro*/
    0,                                  /*tp_setattro*/
    0,                                  /*tp_as_buffer*/
    Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC, /* tp_flags*/
    0,                                  /*tp_doc*/
    (traverseproc) __Pyx_CyFunction_traverse,   /*tp_traverse*/
    (inquiry) __Pyx_CyFunction_clear,   /*tp_clear*/
    0,                                  /*tp_richcompare*/
    offsetof(__pyx_CyFunctionObject, func_weakreflist), /* tp_weaklistoffse */
    0,                                  /*tp_iter*/
    0,                                  /*tp_iternext*/
    __pyx_CyFunction_methods,           /*tp_methods*/
    __pyx_CyFunction_members,           /*tp_members*/
    __pyx_CyFunction_getsets,           /*tp_getset*/
    0,                                  /*tp_base*/
    0,                                  /*tp_dict*/
    __Pyx_CyFunction_descr_get,         /*tp_descr_get*/
    0,                                  /*tp_descr_set*/
    offsetof(__pyx_CyFunctionObject, func_dict),/*tp_dictoffset*/
    0,                                  /*tp_init*/
    0,                                  /*tp_alloc*/
    0,                                  /*tp_new*/
    0,                                  /*tp_free*/
    0,                                  /*tp_is_gc*/
    0,                                  /*tp_bases*/
    0,                                  /*tp_mro*/
    0,                                  /*tp_cache*/
    0,                                  /*tp_subclasses*/
    0,                                  /*tp_weaklist*/
    0,                                  /*tp_del*/
#if PY_VERSION_HEX >= 0x02060000
    0,                                  /*tp_version_tag*/
#endif
};
static int __Pyx_CyFunction_init(void)
{
    if (PyType_Ready(&__pyx_CyFunctionType_type) < 0)
        return -1;
    __pyx_CyFunctionType = &__pyx_CyFunctionType_type;
    return 0;
}
void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects)
{
    __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
    m->defaults = PyMem_Malloc(size);
    if (!m->defaults)
        return PyErr_NoMemory();
    memset(m->defaults, 0, sizeof(size));
    m->defaults_pyobjects = pyobjects;
    return m->defaults;
}
static void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple)
{
    __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
    m->defaults_tuple = tuple;
    Py_INCREF(tuple);
}

static CYTHON_INLINE PyObject *__Pyx_PyInt_to_py_uint32_t(uint32_t val) {
    const uint32_t neg_one = (uint32_t)-1, const_zero = (uint32_t)0;
    const int is_unsigned = const_zero < neg_one;
    if ((sizeof(uint32_t) == sizeof(char))  ||
        (sizeof(uint32_t) == sizeof(short))) {
        return PyInt_FromLong((long)val);
    } else if ((sizeof(uint32_t) == sizeof(int)) ||
               (sizeof(uint32_t) == sizeof(long))) {
        if (is_unsigned)
            return PyLong_FromUnsignedLong((unsigned long)val);
        else
            return PyInt_FromLong((long)val);
    } else if (sizeof(uint32_t) == sizeof(PY_LONG_LONG)) {
        if (is_unsigned)
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG)val);
        else
            return PyLong_FromLongLong((PY_LONG_LONG)val);
    } else {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&val;
        return _PyLong_FromByteArray(bytes, sizeof(uint32_t),
                                     little, !is_unsigned);
    }
}

static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) {
    if (s1 == s2) {
        return (equals == Py_EQ);
    } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) {
        if (PyBytes_GET_SIZE(s1) != PyBytes_GET_SIZE(s2)) {
            return (equals == Py_NE);
        } else if (PyBytes_GET_SIZE(s1) == 1) {
            if (equals == Py_EQ)
                return (PyBytes_AS_STRING(s1)[0] == PyBytes_AS_STRING(s2)[0]);
            else
                return (PyBytes_AS_STRING(s1)[0] != PyBytes_AS_STRING(s2)[0]);
        } else {
            int result = memcmp(PyBytes_AS_STRING(s1), PyBytes_AS_STRING(s2), (size_t)PyBytes_GET_SIZE(s1));
            return (equals == Py_EQ) ? (result == 0) : (result != 0);
        }
    } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) {
        return (equals == Py_NE);
    } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) {
        return (equals == Py_NE);
    } else {
        int result;
        PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
        if (!py_result)
            return -1;
        result = __Pyx_PyObject_IsTrue(py_result);
        Py_DECREF(py_result);
        return result;
    }
}

static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) {
    if (s1 == s2) {
        return (equals == Py_EQ);
    } else if (PyUnicode_CheckExact(s1) & PyUnicode_CheckExact(s2)) {
        #if CYTHON_PEP393_ENABLED
        if ((PyUnicode_READY(s1) < 0) || (PyUnicode_READY(s2) < 0))
            return -1;
        if (PyUnicode_GET_LENGTH(s1) != PyUnicode_GET_LENGTH(s2)) {
            return (equals == Py_NE);
        } else if (PyUnicode_GET_LENGTH(s1) == 1) {
            Py_UCS4 ch1 = PyUnicode_READ_CHAR(s1, 0);
            Py_UCS4 ch2 = PyUnicode_READ_CHAR(s2, 0);
            return (equals == Py_EQ) ? (ch1 == ch2) : (ch1 != ch2);
        #else
        if (PyUnicode_GET_SIZE(s1) != PyUnicode_GET_SIZE(s2)) {
            return (equals == Py_NE);
        } else if (PyUnicode_GET_SIZE(s1) == 1) {
            Py_UNICODE ch1 = PyUnicode_AS_UNICODE(s1)[0];
            Py_UNICODE ch2 = PyUnicode_AS_UNICODE(s2)[0];
            return (equals == Py_EQ) ? (ch1 == ch2) : (ch1 != ch2);
        #endif
        } else {
            int result = PyUnicode_Compare(s1, s2);
            if ((result == -1) && unlikely(PyErr_Occurred()))
                return -1;
            return (equals == Py_EQ) ? (result == 0) : (result != 0);
        }
    } else if ((s1 == Py_None) & PyUnicode_CheckExact(s2)) {
        return (equals == Py_NE);
    } else if ((s2 == Py_None) & PyUnicode_CheckExact(s1)) {
        return (equals == Py_NE);
    } else {
        int result;
        PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
        if (!py_result)
            return -1;
        result = __Pyx_PyObject_IsTrue(py_result);
        Py_DECREF(py_result);
        return result;
    }
}

static CYTHON_INLINE unsigned char __Pyx_PyInt_AsUnsignedChar(PyObject* x) {
    const unsigned char neg_one = (unsigned char)-1, const_zero = 0;
    const int is_unsigned = neg_one > const_zero;
    if (sizeof(unsigned char) < sizeof(long)) {
        long val = __Pyx_PyInt_AsLong(x);
        if (unlikely(val != (long)(unsigned char)val)) {
            if (!unlikely(val == -1 && PyErr_Occurred())) {
                PyErr_SetString(PyExc_OverflowError,
                    (is_unsigned && unlikely(val < 0)) ?
                    "can't convert negative value to unsigned char" :
                    "value too large to convert to unsigned char");
            }
            return (unsigned char)-1;
        }
        return (unsigned char)val;
    }
    return (unsigned char)__Pyx_PyInt_AsUnsignedLong(x);
}

static CYTHON_INLINE unsigned short __Pyx_PyInt_AsUnsignedShort(PyObject* x) {
    const unsigned short neg_one = (unsigned short)-1, const_zero = 0;
    const int is_unsigned = neg_one > const_zero;
    if (sizeof(unsigned short) < sizeof(long)) {
        long val = __Pyx_PyInt_AsLong(x);
        if (unlikely(val != (long)(unsigned short)val)) {
            if (!unlikely(val == -1 && PyErr_Occurred())) {
                PyErr_SetString(PyExc_OverflowError,
                    (is_unsigned && unlikely(val < 0)) ?
                    "can't convert negative value to unsigned short" :
                    "value too large to convert to unsigned short");
            }
            return (unsigned short)-1;
        }
        return (unsigned short)val;
    }
    return (unsigned short)__Pyx_PyInt_AsUnsignedLong(x);
}

static CYTHON_INLINE unsigned int __Pyx_PyInt_AsUnsignedInt(PyObject* x) {
    const unsigned int neg_one = (unsigned int)-1, const_zero = 0;
    const int is_unsigned = neg_one > const_zero;
    if (sizeof(unsigned int) < sizeof(long)) {
        long val = __Pyx_PyInt_AsLong(x);
        if (unlikely(val != (long)(unsigned int)val)) {
            if (!unlikely(val == -1 && PyErr_Occurred())) {
                PyErr_SetString(PyExc_OverflowError,
                    (is_unsigned && unlikely(val < 0)) ?
                    "can't convert negative value to unsigned int" :
                    "value too large to convert to unsigned int");
            }
            return (unsigned int)-1;
        }
        return (unsigned int)val;
    }
    return (unsigned int)__Pyx_PyInt_AsUnsignedLong(x);
}

static CYTHON_INLINE char __Pyx_PyInt_AsChar(PyObject* x) {
    const char neg_one = (char)-1, const_zero = 0;
    const int is_unsigned = neg_one > const_zero;
    if (sizeof(char) < sizeof(long)) {
        long val = __Pyx_PyInt_AsLong(x);
        if (unlikely(val != (long)(char)val)) {
            if (!unlikely(val == -1 && PyErr_Occurred())) {
                PyErr_SetString(PyExc_OverflowError,
                    (is_unsigned && unlikely(val < 0)) ?
                    "can't convert negative value to char" :
                    "value too large to convert to char");
            }
            return (char)-1;
        }
        return (char)val;
    }
    return (char)__Pyx_PyInt_AsLong(x);
}

static CYTHON_INLINE short __Pyx_PyInt_AsShort(PyObject* x) {
    const short neg_one = (short)-1, const_zero = 0;
    const int is_unsigned = neg_one > const_zero;
    if (sizeof(short) < sizeof(long)) {
        long val = __Pyx_PyInt_AsLong(x);
        if (unlikely(val != (long)(short)val)) {
            if (!unlikely(val == -1 && PyErr_Occurred())) {
                PyErr_SetString(PyExc_OverflowError,
                    (is_unsigned && unlikely(val < 0)) ?
                    "can't convert negative value to short" :
                    "value too large to convert to short");
            }
            return (short)-1;
        }
        return (short)val;
    }
    return (short)__Pyx_PyInt_AsLong(x);
}

static CYTHON_INLINE int __Pyx_PyInt_AsInt(PyObject* x) {
    const int neg_one = (int)-1, const_zero = 0;
    const int is_unsigned = neg_one > const_zero;
    if (sizeof(int) < sizeof(long)) {
        long val = __Pyx_PyInt_AsLong(x);
        if (unlikely(val != (long)(int)val)) {
            if (!unlikely(val == -1 && PyErr_Occurred())) {
                PyErr_SetString(PyExc_OverflowError,
                    (is_unsigned && unlikely(val < 0)) ?
                    "can't convert negative value to int" :
                    "value too large to convert to int");
            }
            return (int)-1;
        }
        return (int)val;
    }
    return (int)__Pyx_PyInt_AsLong(x);
}

static CYTHON_INLINE signed char __Pyx_PyInt_AsSignedChar(PyObject* x) {
    const signed char neg_one = (signed char)-1, const_zero = 0;
    const int is_unsigned = neg_one > const_zero;
    if (sizeof(signed char) < sizeof(long)) {
        long val = __Pyx_PyInt_AsLong(x);
        if (unlikely(val != (long)(signed char)val)) {
            if (!unlikely(val == -1 && PyErr_Occurred())) {
                PyErr_SetString(PyExc_OverflowError,
                    (is_unsigned && unlikely(val < 0)) ?
                    "can't convert negative value to signed char" :
                    "value too large to convert to signed char");
            }
            return (signed char)-1;
        }
        return (signed char)val;
    }
    return (signed char)__Pyx_PyInt_AsSignedLong(x);
}

static CYTHON_INLINE signed short __Pyx_PyInt_AsSignedShort(PyObject* x) {
    const signed short neg_one = (signed short)-1, const_zero = 0;
    const int is_unsigned = neg_one > const_zero;
    if (sizeof(signed short) < sizeof(long)) {
        long val = __Pyx_PyInt_AsLong(x);
        if (unlikely(val != (long)(signed short)val)) {
            if (!unlikely(val == -1 && PyErr_Occurred())) {
                PyErr_SetString(PyExc_OverflowError,
                    (is_unsigned && unlikely(val < 0)) ?
                    "can't convert negative value to signed short" :
                    "value too large to convert to signed short");
            }
            return (signed short)-1;
        }
        return (signed short)val;
    }
    return (signed short)__Pyx_PyInt_AsSignedLong(x);
}

static CYTHON_INLINE signed int __Pyx_PyInt_AsSignedInt(PyObject* x) {
    const signed int neg_one = (signed int)-1, const_zero = 0;
    const int is_unsigned = neg_one > const_zero;
    if (sizeof(signed int) < sizeof(long)) {
        long val = __Pyx_PyInt_AsLong(x);
        if (unlikely(val != (long)(signed int)val)) {
            if (!unlikely(val == -1 && PyErr_Occurred())) {
                PyErr_SetString(PyExc_OverflowError,
                    (is_unsigned && unlikely(val < 0)) ?
                    "can't convert negative value to signed int" :
                    "value too large to convert to signed int");
            }
            return (signed int)-1;
        }
        return (signed int)val;
    }
    return (signed int)__Pyx_PyInt_AsSignedLong(x);
}

static CYTHON_INLINE int __Pyx_PyInt_AsLongDouble(PyObject* x) {
    const int neg_one = (int)-1, const_zero = 0;
    const int is_unsigned = neg_one > const_zero;
    if (sizeof(int) < sizeof(long)) {
        long val = __Pyx_PyInt_AsLong(x);
        if (unlikely(val != (long)(int)val)) {
            if (!unlikely(val == -1 && PyErr_Occurred())) {
                PyErr_SetString(PyExc_OverflowError,
                    (is_unsigned && unlikely(val < 0)) ?
                    "can't convert negative value to int" :
                    "value too large to convert to int");
            }
            return (int)-1;
        }
        return (int)val;
    }
    return (int)__Pyx_PyInt_AsLong(x);
}

static CYTHON_INLINE unsigned long __Pyx_PyInt_AsUnsignedLong(PyObject* x) {
    const unsigned long neg_one = (unsigned long)-1, const_zero = 0;
    const int is_unsigned = neg_one > const_zero;
#if PY_VERSION_HEX < 0x03000000
    if (likely(PyInt_Check(x))) {
        long val = PyInt_AS_LONG(x);
        if (is_unsigned && unlikely(val < 0)) {
            PyErr_SetString(PyExc_OverflowError,
                            "can't convert negative value to unsigned long");
            return (unsigned long)-1;
        }
        return (unsigned long)val;
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
            if (unlikely(Py_SIZE(x) < 0)) {
                PyErr_SetString(PyExc_OverflowError,
                                "can't convert negative value to unsigned long");
                return (unsigned long)-1;
            }
            return (unsigned long)PyLong_AsUnsignedLong(x);
        } else {
            return (unsigned long)PyLong_AsLong(x);
        }
    } else {
        unsigned long val;
        PyObject *tmp = __Pyx_PyNumber_Int(x);
        if (!tmp) return (unsigned long)-1;
        val = __Pyx_PyInt_AsUnsignedLong(tmp);
        Py_DECREF(tmp);
        return val;
    }
}

static CYTHON_INLINE unsigned PY_LONG_LONG __Pyx_PyInt_AsUnsignedLongLong(PyObject* x) {
    const unsigned PY_LONG_LONG neg_one = (unsigned PY_LONG_LONG)-1, const_zero = 0;
    const int is_unsigned = neg_one > const_zero;
#if PY_VERSION_HEX < 0x03000000
    if (likely(PyInt_Check(x))) {
        long val = PyInt_AS_LONG(x);
        if (is_unsigned && unlikely(val < 0)) {
            PyErr_SetString(PyExc_OverflowError,
                            "can't convert negative value to unsigned PY_LONG_LONG");
            return (unsigned PY_LONG_LONG)-1;
        }
        return (unsigned PY_LONG_LONG)val;
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
            if (unlikely(Py_SIZE(x) < 0)) {
                PyErr_SetString(PyExc_OverflowError,
                                "can't convert negative value to unsigned PY_LONG_LONG");
                return (unsigned PY_LONG_LONG)-1;
            }
            return (unsigned PY_LONG_LONG)PyLong_AsUnsignedLongLong(x);
        } else {
            return (unsigned PY_LONG_LONG)PyLong_AsLongLong(x);
        }
    } else {
        unsigned PY_LONG_LONG val;
        PyObject *tmp = __Pyx_PyNumber_Int(x);
        if (!tmp) return (unsigned PY_LONG_LONG)-1;
        val = __Pyx_PyInt_AsUnsignedLongLong(tmp);
        Py_DECREF(tmp);
        return val;
    }
}

static CYTHON_INLINE long __Pyx_PyInt_AsLong(PyObject* x) {
    const long neg_one = (long)-1, const_zero = 0;
    const int is_unsigned = neg_one > const_zero;
#if PY_VERSION_HEX < 0x03000000
    if (likely(PyInt_Check(x))) {
        long val = PyInt_AS_LONG(x);
        if (is_unsigned && unlikely(val < 0)) {
            PyErr_SetString(PyExc_OverflowError,
                            "can't convert negative value to long");
            return (long)-1;
        }
        return (long)val;
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
            if (unlikely(Py_SIZE(x) < 0)) {
                PyErr_SetString(PyExc_OverflowError,
                                "can't convert negative value to long");
                return (long)-1;
            }
            return (long)PyLong_AsUnsignedLong(x);
        } else {
            return (long)PyLong_AsLong(x);
        }
    } else {
        long val;
        PyObject *tmp = __Pyx_PyNumber_Int(x);
        if (!tmp) return (long)-1;
        val = __Pyx_PyInt_AsLong(tmp);
        Py_DECREF(tmp);
        return val;
    }
}

static CYTHON_INLINE PY_LONG_LONG __Pyx_PyInt_AsLongLong(PyObject* x) {
    const PY_LONG_LONG neg_one = (PY_LONG_LONG)-1, const_zero = 0;
    const int is_unsigned = neg_one > const_zero;
#if PY_VERSION_HEX < 0x03000000
    if (likely(PyInt_Check(x))) {
        long val = PyInt_AS_LONG(x);
        if (is_unsigned && unlikely(val < 0)) {
            PyErr_SetString(PyExc_OverflowError,
                            "can't convert negative value to PY_LONG_LONG");
            return (PY_LONG_LONG)-1;
        }
        return (PY_LONG_LONG)val;
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
            if (unlikely(Py_SIZE(x) < 0)) {
                PyErr_SetString(PyExc_OverflowError,
                                "can't convert negative value to PY_LONG_LONG");
                return (PY_LONG_LONG)-1;
            }
            return (PY_LONG_LONG)PyLong_AsUnsignedLongLong(x);
        } else {
            return (PY_LONG_LONG)PyLong_AsLongLong(x);
        }
    } else {
        PY_LONG_LONG val;
        PyObject *tmp = __Pyx_PyNumber_Int(x);
        if (!tmp) return (PY_LONG_LONG)-1;
        val = __Pyx_PyInt_AsLongLong(tmp);
        Py_DECREF(tmp);
        return val;
    }
}

static CYTHON_INLINE signed long __Pyx_PyInt_AsSignedLong(PyObject* x) {
    const signed long neg_one = (signed long)-1, const_zero = 0;
    const int is_unsigned = neg_one > const_zero;
#if PY_VERSION_HEX < 0x03000000
    if (likely(PyInt_Check(x))) {
        long val = PyInt_AS_LONG(x);
        if (is_unsigned && unlikely(val < 0)) {
            PyErr_SetString(PyExc_OverflowError,
                            "can't convert negative value to signed long");
            return (signed long)-1;
        }
        return (signed long)val;
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
            if (unlikely(Py_SIZE(x) < 0)) {
                PyErr_SetString(PyExc_OverflowError,
                                "can't convert negative value to signed long");
                return (signed long)-1;
            }
            return (signed long)PyLong_AsUnsignedLong(x);
        } else {
            return (signed long)PyLong_AsLong(x);
        }
    } else {
        signed long val;
        PyObject *tmp = __Pyx_PyNumber_Int(x);
        if (!tmp) return (signed long)-1;
        val = __Pyx_PyInt_AsSignedLong(tmp);
        Py_DECREF(tmp);
        return val;
    }
}

static CYTHON_INLINE signed PY_LONG_LONG __Pyx_PyInt_AsSignedLongLong(PyObject* x) {
    const signed PY_LONG_LONG neg_one = (signed PY_LONG_LONG)-1, const_zero = 0;
    const int is_unsigned = neg_one > const_zero;
#if PY_VERSION_HEX < 0x03000000
    if (likely(PyInt_Check(x))) {
        long val = PyInt_AS_LONG(x);
        if (is_unsigned && unlikely(val < 0)) {
            PyErr_SetString(PyExc_OverflowError,
                            "can't convert negative value to signed PY_LONG_LONG");
            return (signed PY_LONG_LONG)-1;
        }
        return (signed PY_LONG_LONG)val;
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
            if (unlikely(Py_SIZE(x) < 0)) {
                PyErr_SetString(PyExc_OverflowError,
                                "can't convert negative value to signed PY_LONG_LONG");
                return (signed PY_LONG_LONG)-1;
            }
            return (signed PY_LONG_LONG)PyLong_AsUnsignedLongLong(x);
        } else {
            return (signed PY_LONG_LONG)PyLong_AsLongLong(x);
        }
    } else {
        signed PY_LONG_LONG val;
        PyObject *tmp = __Pyx_PyNumber_Int(x);
        if (!tmp) return (signed PY_LONG_LONG)-1;
        val = __Pyx_PyInt_AsSignedLongLong(tmp);
        Py_DECREF(tmp);
        return val;
    }
}

static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb) {
    PyObject *tmp_type, *tmp_value, *tmp_tb;
    PyThreadState *tstate = PyThreadState_GET();
    tmp_type = tstate->exc_type;
    tmp_value = tstate->exc_value;
    tmp_tb = tstate->exc_traceback;
    tstate->exc_type = *type;
    tstate->exc_value = *value;
    tstate->exc_traceback = *tb;
    *type = tmp_type;
    *value = tmp_value;
    *tb = tmp_tb;
}

static PyObject *__Pyx_Generator_Next(PyObject *self);
static PyObject *__Pyx_Generator_Send(PyObject *self, PyObject *value);
static PyObject *__Pyx_Generator_Close(PyObject *self);
static PyObject *__Pyx_Generator_Throw(PyObject *gen, PyObject *args);
static CYTHON_INLINE
void __Pyx_Generator_ExceptionClear(__pyx_GeneratorObject *self)
{
    PyObject *exc_type = self->exc_type;
    PyObject *exc_value = self->exc_value;
    PyObject *exc_traceback = self->exc_traceback;
    self->exc_type = NULL;
    self->exc_value = NULL;
    self->exc_traceback = NULL;
    Py_XDECREF(exc_type);
    Py_XDECREF(exc_value);
    Py_XDECREF(exc_traceback);
}
static CYTHON_INLINE
PyObject *__Pyx_Generator_SendEx(__pyx_GeneratorObject *self, PyObject *value)
{
    PyObject *retval;
    if (unlikely(self->is_running)) {
        PyErr_SetString(PyExc_ValueError,
                        "generator already executing");
        return NULL;
    }
    if (unlikely(self->resume_label == 0)) {
        if (unlikely(value && value != Py_None)) {
            PyErr_SetString(PyExc_TypeError,
                            "can't send non-None value to a "
                            "just-started generator");
            return NULL;
        }
    }
    if (unlikely(self->resume_label == -1)) {
        PyErr_SetNone(PyExc_StopIteration);
        return NULL;
    }
    if (value)
        __Pyx_ExceptionSwap(&self->exc_type, &self->exc_value, &self->exc_traceback);
    else
        __Pyx_Generator_ExceptionClear(self);
    self->is_running = 1;
    retval = self->body((PyObject *) self, value);
    self->is_running = 0;
    if (retval)
        __Pyx_ExceptionSwap(&self->exc_type, &self->exc_value, &self->exc_traceback);
    else
        __Pyx_Generator_ExceptionClear(self);
    return retval;
}
static PyObject *__Pyx_Generator_Next(PyObject *self)
{
    return __Pyx_Generator_SendEx((__pyx_GeneratorObject *) self, Py_None);
}
static PyObject *__Pyx_Generator_Send(PyObject *self, PyObject *value)
{
    return __Pyx_Generator_SendEx((__pyx_GeneratorObject *) self, value);
}
static PyObject *__Pyx_Generator_Close(PyObject *self)
{
    __pyx_GeneratorObject *generator = (__pyx_GeneratorObject *) self;
    PyObject *retval;
#if PY_VERSION_HEX < 0x02050000
    PyErr_SetNone(PyExc_StopIteration);
#else
    PyErr_SetNone(PyExc_GeneratorExit);
#endif
    retval = __Pyx_Generator_SendEx(generator, NULL);
    if (retval) {
        Py_DECREF(retval);
        PyErr_SetString(PyExc_RuntimeError,
                        "generator ignored GeneratorExit");
        return NULL;
    }
#if PY_VERSION_HEX < 0x02050000
    if (PyErr_ExceptionMatches(PyExc_StopIteration))
#else
    if (PyErr_ExceptionMatches(PyExc_StopIteration)
        || PyErr_ExceptionMatches(PyExc_GeneratorExit))
#endif
    {
        PyErr_Clear();          /* ignore these errors */
        Py_INCREF(Py_None);
        return Py_None;
    }
    return NULL;
}
static PyObject *__Pyx_Generator_Throw(PyObject *self, PyObject *args)
{
    __pyx_GeneratorObject *generator = (__pyx_GeneratorObject *) self;
    PyObject *typ;
    PyObject *tb = NULL;
    PyObject *val = NULL;
    if (!PyArg_UnpackTuple(args, (char *)"throw", 1, 3, &typ, &val, &tb))
        return NULL;
    __Pyx_Raise(typ, val, tb, NULL);
    return __Pyx_Generator_SendEx(generator, NULL);
}
static int
__Pyx_Generator_traverse(PyObject *self, visitproc visit, void *arg)
{
    __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self;
    Py_VISIT(gen->closure);
    Py_VISIT(gen->classobj);
    Py_VISIT(gen->exc_type);
    Py_VISIT(gen->exc_value);
    Py_VISIT(gen->exc_traceback);
    return 0;
}
static void
__Pyx_Generator_dealloc(PyObject *self)
{
    __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self;
    PyObject_GC_UnTrack(gen);
    if (gen->gi_weakreflist != NULL)
        PyObject_ClearWeakRefs(self);
    PyObject_GC_Track(self);
    if (gen->resume_label > 0) {
        Py_TYPE(gen)->tp_del(self);
        if (self->ob_refcnt > 0)
            return;                     /* resurrected.  :( */
    }
    PyObject_GC_UnTrack(self);
    Py_CLEAR(gen->closure);
    Py_CLEAR(gen->classobj);
    Py_CLEAR(gen->exc_type);
    Py_CLEAR(gen->exc_value);
    Py_CLEAR(gen->exc_traceback);
    PyObject_GC_Del(gen);
}
static void
__Pyx_Generator_del(PyObject *self)
{
    PyObject *res;
    PyObject *error_type, *error_value, *error_traceback;
    __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self;
    if (gen->resume_label <= 0)
        return ;
    assert(self->ob_refcnt == 0);
    self->ob_refcnt = 1;
    __Pyx_ErrFetch(&error_type, &error_value, &error_traceback);
    res = __Pyx_Generator_Close(self);
    if (res == NULL)
        PyErr_WriteUnraisable(self);
    else
        Py_DECREF(res);
    __Pyx_ErrRestore(error_type, error_value, error_traceback);
    /* Undo the temporary resurrection; can't use DECREF here, it would
     * cause a recursive call.
     */
    assert(self->ob_refcnt > 0);
    if (--self->ob_refcnt == 0)
        return; /* this is the normal path out */
    /* close() resurrected it!  Make it look like the original Py_DECREF
     * never happened.
     */
    {
        Py_ssize_t refcnt = self->ob_refcnt;
        _Py_NewReference(self);
        self->ob_refcnt = refcnt;
    }
    assert(PyType_IS_GC(self->ob_type) &&
           _Py_AS_GC(self)->gc.gc_refs != _PyGC_REFS_UNTRACKED);
    /* If Py_REF_DEBUG, _Py_NewReference bumped _Py_RefTotal, so
     * we need to undo that. */
    _Py_DEC_REFTOTAL;
    /* If Py_TRACE_REFS, _Py_NewReference re-added self to the object
     * chain, so no more to do there.
     * If COUNT_ALLOCS, the original decref bumped tp_frees, and
     * _Py_NewReference bumped tp_allocs:  both of those need to be
     * undone.
     */
#ifdef COUNT_ALLOCS
    --self->ob_type->tp_frees;
    --self->ob_type->tp_allocs;
#endif
}
static PyMemberDef __pyx_Generator_memberlist[] = {
    {(char *) "gi_running",
     T_INT,
     offsetof(__pyx_GeneratorObject, is_running),
     READONLY,
     NULL},
    {0, 0, 0, 0, 0}
};
static PyMethodDef __pyx_Generator_methods[] = {
    {__Pyx_NAMESTR("send"), (PyCFunction) __Pyx_Generator_Send, METH_O, 0},
    {__Pyx_NAMESTR("throw"), (PyCFunction) __Pyx_Generator_Throw, METH_VARARGS, 0},
    {__Pyx_NAMESTR("close"), (PyCFunction) __Pyx_Generator_Close, METH_NOARGS, 0},
    {0, 0, 0, 0}
};
static PyTypeObject __pyx_GeneratorType = {
    PyVarObject_HEAD_INIT(0, 0)
    __Pyx_NAMESTR("generator"),         /*tp_name*/
    sizeof(__pyx_GeneratorObject),      /*tp_basicsize*/
    0,                                  /*tp_itemsize*/
    (destructor) __Pyx_Generator_dealloc,/*tp_dealloc*/
    0,                                  /*tp_print*/
    0,                                  /*tp_getattr*/
    0,                                  /*tp_setattr*/
#if PY_MAJOR_VERSION < 3
    0,                                  /*tp_compare*/
#else
    0,                                  /*reserved*/
#endif
    0,                                   /*tp_repr*/
    0,                                  /*tp_as_number*/
    0,                                  /*tp_as_sequence*/
    0,                                  /*tp_as_mapping*/
    0,                                  /*tp_hash*/
    0,                                  /*tp_call*/
    0,                                  /*tp_str*/
    PyObject_GenericGetAttr,            /*tp_getattro*/
    0,                                  /*tp_setattro*/
    0,                                  /*tp_as_buffer*/
    Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC, /* tp_flags*/
    0,                                  /*tp_doc*/
    (traverseproc) __Pyx_Generator_traverse,   /*tp_traverse*/
    0,                                  /*tp_clear*/
    0,                                  /*tp_richcompare*/
    offsetof(__pyx_GeneratorObject, gi_weakreflist), /* tp_weaklistoffse */
    PyObject_SelfIter,                  /*tp_iter*/
    (iternextfunc) __Pyx_Generator_Next, /*tp_iternext*/
    __pyx_Generator_methods,            /*tp_methods*/
    __pyx_Generator_memberlist,         /*tp_members*/
    0,                                  /*tp_getset*/
    0,                                  /*tp_base*/
    0,                                  /*tp_dict*/
    0,                                  /*tp_descr_get*/
    0,                                  /*tp_descr_set*/
    0,                                  /*tp_dictoffset*/
    0,                                  /*tp_init*/
    0,                                  /*tp_alloc*/
    0,                                  /*tp_new*/
    0,                                  /*tp_free*/
    0,                                  /*tp_is_gc*/
    0,                                  /*tp_bases*/
    0,                                  /*tp_mro*/
    0,                                  /*tp_cache*/
    0,                                  /*tp_subclasses*/
    0,                                  /*tp_weaklist*/
    __Pyx_Generator_del,                /*tp_del*/
#if PY_VERSION_HEX >= 0x02060000
    0,                                  /*tp_version_tag*/
#endif
};
static
__pyx_GeneratorObject *__Pyx_Generator_New(__pyx_generator_body_t body,
                                           PyObject *closure)
{
    __pyx_GeneratorObject *gen =
        PyObject_GC_New(__pyx_GeneratorObject, &__pyx_GeneratorType);
    if (gen == NULL)
        return NULL;
    gen->body = body;
    gen->closure = closure;
    Py_XINCREF(closure);
    gen->is_running = 0;
    gen->resume_label = 0;
    gen->classobj = NULL;
    gen->exc_type = NULL;
    gen->exc_value = NULL;
    gen->exc_traceback = NULL;
    gen->gi_weakreflist = NULL;
    PyObject_GC_Track(gen);
    return gen;
}
static int __pyx_Generator_init(void)
{
    return PyType_Ready(&__pyx_GeneratorType);
}

static int __Pyx_check_binary_version(void) {
    char ctversion[4], rtversion[4];
    PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION);
    PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion());
    if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) {
        char message[200];
        PyOS_snprintf(message, sizeof(message),
                      "compiletime version %s of module '%.100s' "
                      "does not match runtime version %s",
                      ctversion, __Pyx_MODULE_NAME, rtversion);
        #if PY_VERSION_HEX < 0x02050000
        return PyErr_Warn(NULL, message);
        #else
        return PyErr_WarnEx(NULL, message, 1);
        #endif
    }
    return 0;
}

#ifndef __PYX_HAVE_RT_ImportType
#define __PYX_HAVE_RT_ImportType
static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name,
    size_t size, int strict)
{
    PyObject *py_module = 0;
    PyObject *result = 0;
    PyObject *py_name = 0;
    char warning[200];
    py_module = __Pyx_ImportModule(module_name);
    if (!py_module)
        goto bad;
    py_name = __Pyx_PyIdentifier_FromString(class_name);
    if (!py_name)
        goto bad;
    result = PyObject_GetAttr(py_module, py_name);
    Py_DECREF(py_name);
    py_name = 0;
    Py_DECREF(py_module);
    py_module = 0;
    if (!result)
        goto bad;
    if (!PyType_Check(result)) {
        PyErr_Format(PyExc_TypeError,
            "%s.%s is not a type object",
            module_name, class_name);
        goto bad;
    }
    if (!strict && (size_t)((PyTypeObject *)result)->tp_basicsize > size) {
        PyOS_snprintf(warning, sizeof(warning),
            "%s.%s size changed, may indicate binary incompatibility",
            module_name, class_name);
        #if PY_VERSION_HEX < 0x02050000
        if (PyErr_Warn(NULL, warning) < 0) goto bad;
        #else
        if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad;
        #endif
    }
    else if ((size_t)((PyTypeObject *)result)->tp_basicsize != size) {
        PyErr_Format(PyExc_ValueError,
            "%s.%s has the wrong size, try recompiling",
            module_name, class_name);
        goto bad;
    }
    return (PyTypeObject *)result;
bad:
    Py_XDECREF(py_module);
    Py_XDECREF(result);
    return NULL;
}
#endif

#ifndef __PYX_HAVE_RT_ImportModule
#define __PYX_HAVE_RT_ImportModule
static PyObject *__Pyx_ImportModule(const char *name) {
    PyObject *py_name = 0;
    PyObject *py_module = 0;
    py_name = __Pyx_PyIdentifier_FromString(name);
    if (!py_name)
        goto bad;
    py_module = PyImport_Import(py_name);
    Py_DECREF(py_name);
    return py_module;
bad:
    Py_XDECREF(py_name);
    return 0;
}
#endif

static void* __Pyx_GetVtable(PyObject *dict) {
    void* ptr;
    PyObject *ob = PyMapping_GetItemString(dict, (char *)"__pyx_vtable__");
    if (!ob)
        goto bad;
#if PY_VERSION_HEX >= 0x02070000 && !(PY_MAJOR_VERSION==3&&PY_MINOR_VERSION==0)
    ptr = PyCapsule_GetPointer(ob, 0);
#else
    ptr = PyCObject_AsVoidPtr(ob);
#endif
    if (!ptr && !PyErr_Occurred())
        PyErr_SetString(PyExc_RuntimeError, "invalid vtable found for imported type");
    Py_DECREF(ob);
    return ptr;
bad:
    Py_XDECREF(ob);
    return NULL;
}

static int __Pyx_SetVtable(PyObject *dict, void *vtable) {
#if PY_VERSION_HEX >= 0x02070000 && !(PY_MAJOR_VERSION==3&&PY_MINOR_VERSION==0)
    PyObject *ob = PyCapsule_New(vtable, 0, 0);
#else
    PyObject *ob = PyCObject_FromVoidPtr(vtable, 0);
#endif
    if (!ob)
        goto bad;
    if (PyDict_SetItemString(dict, "__pyx_vtable__", ob) < 0)
        goto bad;
    Py_DECREF(ob);
    return 0;
bad:
    Py_XDECREF(ob);
    return -1;
}

static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) {
    int start = 0, mid = 0, end = count - 1;
    if (end >= 0 && code_line > entries[end].code_line) {
        return count;
    }
    while (start < end) {
        mid = (start + end) / 2;
        if (code_line < entries[mid].code_line) {
            end = mid;
        } else if (code_line > entries[mid].code_line) {
             start = mid + 1;
        } else {
            return mid;
        }
    }
    if (code_line <= entries[mid].code_line) {
        return mid;
    } else {
        return mid + 1;
    }
}
static PyCodeObject *__pyx_find_code_object(int code_line) {
    PyCodeObject* code_object;
    int pos;
    if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) {
        return NULL;
    }
    pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
    if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) {
        return NULL;
    }
    code_object = __pyx_code_cache.entries[pos].code_object;
    Py_INCREF(code_object);
    return code_object;
}
static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) {
    int pos, i;
    __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries;
    if (unlikely(!code_line)) {
        return;
    }
    if (unlikely(!entries)) {
        entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry));
        if (likely(entries)) {
            __pyx_code_cache.entries = entries;
            __pyx_code_cache.max_count = 64;
            __pyx_code_cache.count = 1;
            entries[0].code_line = code_line;
            entries[0].code_object = code_object;
            Py_INCREF(code_object);
        }
        return;
    }
    pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
    if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) {
        PyCodeObject* tmp = entries[pos].code_object;
        entries[pos].code_object = code_object;
        Py_DECREF(tmp);
        return;
    }
    if (__pyx_code_cache.count == __pyx_code_cache.max_count) {
        int new_max = __pyx_code_cache.max_count + 64;
        entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc(
            __pyx_code_cache.entries, new_max*sizeof(__Pyx_CodeObjectCacheEntry));
        if (unlikely(!entries)) {
            return;
        }
        __pyx_code_cache.entries = entries;
        __pyx_code_cache.max_count = new_max;
    }
    for (i=__pyx_code_cache.count; i>pos; i--) {
        entries[i] = entries[i-1];
    }
    entries[pos].code_line = code_line;
    entries[pos].code_object = code_object;
    __pyx_code_cache.count++;
    Py_INCREF(code_object);
}

#include "compile.h"
#include "frameobject.h"
#include "traceback.h"
static PyCodeObject* __Pyx_CreateCodeObjectForTraceback(
            const char *funcname, int c_line,
            int py_line, const char *filename) {
    PyCodeObject *py_code = 0;
    PyObject *py_srcfile = 0;
    PyObject *py_funcname = 0;
    #if PY_MAJOR_VERSION < 3
    py_srcfile = PyString_FromString(filename);
    #else
    py_srcfile = PyUnicode_FromString(filename);
    #endif
    if (!py_srcfile) goto bad;
    if (c_line) {
        #if PY_MAJOR_VERSION < 3
        py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
        #else
        py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
        #endif
    }
    else {
        #if PY_MAJOR_VERSION < 3
        py_funcname = PyString_FromString(funcname);
        #else
        py_funcname = PyUnicode_FromString(funcname);
        #endif
    }
    if (!py_funcname) goto bad;
    py_code = __Pyx_PyCode_New(
        0,            /*int argcount,*/
        0,            /*int kwonlyargcount,*/
        0,            /*int nlocals,*/
        0,            /*int stacksize,*/
        0,            /*int flags,*/
        __pyx_empty_bytes, /*PyObject *code,*/
        __pyx_empty_tuple, /*PyObject *consts,*/
        __pyx_empty_tuple, /*PyObject *names,*/
        __pyx_empty_tuple, /*PyObject *varnames,*/
        __pyx_empty_tuple, /*PyObject *freevars,*/
        __pyx_empty_tuple, /*PyObject *cellvars,*/
        py_srcfile,   /*PyObject *filename,*/
        py_funcname,  /*PyObject *name,*/
        py_line,      /*int firstlineno,*/
        __pyx_empty_bytes  /*PyObject *lnotab*/
    );
    Py_DECREF(py_srcfile);
    Py_DECREF(py_funcname);
    return py_code;
bad:
    Py_XDECREF(py_srcfile);
    Py_XDECREF(py_funcname);
    return NULL;
}
static void __Pyx_AddTraceback(const char *funcname, int c_line,
                               int py_line, const char *filename) {
    PyCodeObject *py_code = 0;
    PyObject *py_globals = 0;
    PyFrameObject *py_frame = 0;
    py_code = __pyx_find_code_object(c_line ? c_line : py_line);
    if (!py_code) {
        py_code = __Pyx_CreateCodeObjectForTraceback(
            funcname, c_line, py_line, filename);
        if (!py_code) goto bad;
        __pyx_insert_code_object(c_line ? c_line : py_line, py_code);
    }
    py_globals = PyModule_GetDict(__pyx_m);
    if (!py_globals) goto bad;
    py_frame = PyFrame_New(
        PyThreadState_GET(), /*PyThreadState *tstate,*/
        py_code,             /*PyCodeObject *code,*/
        py_globals,          /*PyObject *globals,*/
        0                    /*PyObject *locals*/
    );
    if (!py_frame) goto bad;
    py_frame->f_lineno = py_line;
    PyTraceBack_Here(py_frame);
bad:
    Py_XDECREF(py_code);
    Py_XDECREF(py_frame);
}

static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) {
    while (t->p) {
        #if PY_MAJOR_VERSION < 3
        if (t->is_unicode) {
            *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL);
        } else if (t->intern) {
            *t->p = PyString_InternFromString(t->s);
        } else {
            *t->p = PyString_FromStringAndSize(t->s, t->n - 1);
        }
        #else  /* Python 3+ has unicode identifiers */
        if (t->is_unicode | t->is_str) {
            if (t->intern) {
                *t->p = PyUnicode_InternFromString(t->s);
            } else if (t->encoding) {
                *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL);
            } else {
                *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1);
            }
        } else {
            *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1);
        }
        #endif
        if (!*t->p)
            return -1;
        ++t;
    }
    return 0;
}


/* Type Conversion Functions */

static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) {
   int is_true = x == Py_True;
   if (is_true | (x == Py_False) | (x == Py_None)) return is_true;
   else return PyObject_IsTrue(x);
}

static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) {
  PyNumberMethods *m;
  const char *name = NULL;
  PyObject *res = NULL;
#if PY_VERSION_HEX < 0x03000000
  if (PyInt_Check(x) || PyLong_Check(x))
#else
  if (PyLong_Check(x))
#endif
    return Py_INCREF(x), x;
  m = Py_TYPE(x)->tp_as_number;
#if PY_VERSION_HEX < 0x03000000
  if (m && m->nb_int) {
    name = "int";
    res = PyNumber_Int(x);
  }
  else if (m && m->nb_long) {
    name = "long";
    res = PyNumber_Long(x);
  }
#else
  if (m && m->nb_int) {
    name = "int";
    res = PyNumber_Long(x);
  }
#endif
  if (res) {
#if PY_VERSION_HEX < 0x03000000
    if (!PyInt_Check(res) && !PyLong_Check(res)) {
#else
    if (!PyLong_Check(res)) {
#endif
      PyErr_Format(PyExc_TypeError,
                   "__%s__ returned non-%s (type %.200s)",
                   name, name, Py_TYPE(res)->tp_name);
      Py_DECREF(res);
      return NULL;
    }
  }
  else if (!PyErr_Occurred()) {
    PyErr_SetString(PyExc_TypeError,
                    "an integer is required");
  }
  return res;
}

static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
  Py_ssize_t ival;
  PyObject* x = PyNumber_Index(b);
  if (!x) return -1;
  ival = PyInt_AsSsize_t(x);
  Py_DECREF(x);
  return ival;
}

static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
#if PY_VERSION_HEX < 0x02050000
   if (ival <= LONG_MAX)
       return PyInt_FromLong((long)ival);
   else {
       unsigned char *bytes = (unsigned char *) &ival;
       int one = 1; int little = (int)*(unsigned char*)&one;
       return _PyLong_FromByteArray(bytes, sizeof(size_t), little, 0);
   }
#else
   return PyInt_FromSize_t(ival);
#endif
}

static CYTHON_INLINE size_t __Pyx_PyInt_AsSize_t(PyObject* x) {
   unsigned PY_LONG_LONG val = __Pyx_PyInt_AsUnsignedLongLong(x);
   if (unlikely(val == (unsigned PY_LONG_LONG)-1 && PyErr_Occurred())) {
       return (size_t)-1;
   } else if (unlikely(val != (unsigned PY_LONG_LONG)(size_t)val)) {
       PyErr_SetString(PyExc_OverflowError,
                       "value too large to convert to size_t");
       return (size_t)-1;
   }
   return (size_t)val;
}


#endif /* Py_PYTHON_H */