ex8.bam ex8.bam.bai \
ex9_nofail.bam.bai \
ex9_fail.bam.bai \
- ex10.bam ex10.bam.bai
+ ex10.bam ex10.bam.bai \
+ example_unmapped_reads_no_sq.bam \
+ example_user_header.bam \
+ example_btag.bam
ex2.sam.gz: ex1.bam ex1.bam.bai
samtools view -h ex1.bam | gzip > ex2.sam.gz
ex1.pileup.gz:ex1.bam ex1.fa
samtools pileup -cf ex1.fa ex1.bam | gzip > ex1.pileup.gz
+example_unmapped_reads_no_sq.bam: example_unmapped_reads_no_sq.sam
+ touch tmp.list
+ samtools import tmp.list $< $@
+ rm -f tmp.list
+
clean:
rm -fr *.bam *.bai *.fai *.pileup* \
*~ calDepth *.dSYM pysam_*.sam \