debian/patches/use-libtool

   1 Index: tabix/Makefile
   2 ===================================================================
   3 --- tabix.orig/Makefile 2012-12-21 16:05:38.710131804 -0800
   4 +++ tabix/Makefile      2012-12-21 16:08:18.234126173 -0800
   5 @@ -1,47 +1,47 @@
   6 -CC=                    gcc
   7 -CFLAGS=                -g -Wall -O2 -fPIC #-m64 #-arch ppc
   8 +CC=            gcc
   9 +CFLAGS=                -g -Wall -O2
  10  DFLAGS=                -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE
  11 -LOBJS=         bgzf.o kstring.o knetfile.o index.o bedidx.o
  12 -AOBJS=         main.o
  13 +LOBJS=         bgzf.lo kstring.lo knetfile.lo index.lo bedidx.lo
  14 +AOBJS=         main.lo
  15 +BOBJS=         bgzip.lo bgzf.lo
  16  PROG=          tabix bgzip
  17  INCLUDES=
  18  SUBDIRS=       .
  19  LIBPATH=
  20 -LIBCURSES=
  21 +LIBCURSES=
  22 +LIBNAME=       libtabix.la
  23 +LIBVERSION=    1
  24 +
  25 +# catch platform settings
  26 +UNAME := $(shell uname)
  27 +ifeq ($(UNAME), Darwin)
  28 +LIBTOOL :=     glibtool
  29 +else
  30 +LIBTOOL :=     libtool
  31 +endif
  32 +LTFLAGS=       --tag=CC
  33 +
  34 +ifdef SHARED
  35 +CFLAGS+=       -shared
  36 +else
  37 +CFLAGS+=       -static
  38 +endif
  39 +
  40 +.SUFFIXES:.c .o .lo
  41 +
  42 +.c.lo:
  43 +               $(LIBTOOL) $(LTFLAGS) --mode=compile $(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $<
  44 +
  45 +all:$(PROG) $(LIBNAME)
  46
  47 -.SUFFIXES:.c .o
  48 +$(LIBNAME):$(LOBJS)
  49 +       $(LIBTOOL) $(LTFLAGS) --mode=link $(CC) $(CFLAGS) -version-info $(LIBVERSION) -rpath /usr/lib $(LOBJS) -o $@ -lc -lz
  50
  51 -.c.o:
  52 -               $(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@
  53 +tabix:$(AOBJS) $(LIBNAME)
  54 +       $(LIBTOOL) $(LTFLAGS) --mode=link $(CC) $(CFLAGS) -o $@ $(AOBJS) $(LIBNAME) -lm -lz
  55
  56 -all-recur lib-recur clean-recur cleanlocal-recur install-recur:
  57 -               @target=`echo $@ | sed s/-recur//`; \
  58 -               wdir=`pwd`; \
  59 -               list='$(SUBDIRS)'; for subdir in $$list; do \
  60 -                       cd $$subdir; \
  61 -                       $(MAKE) CC="$(CC)" DFLAGS="$(DFLAGS)" CFLAGS="$(CFLAGS)" \
  62 -                               INCLUDES="$(INCLUDES)" LIBPATH="$(LIBPATH)" $$target || exit 1; \
  63 -                       cd $$wdir; \
  64 -               done;
  65 -
  66 -all:$(PROG)
  67 -
  68 -lib:libtabix.a
  69 -
  70 -libtabix.so.1:$(LOBJS)
  71 -               $(CC) -shared -Wl,-soname,libtabix.so -o $@ $(LOBJS) -lc -lz
  72 -
  73 -libtabix.1.dylib:$(LOBJS)
  74 -               libtool -dynamic $(LOBJS) -o $@ -lc -lz
  75 -
  76 -libtabix.a:$(LOBJS)
  77 -               $(AR) -csru $@ $(LOBJS)
  78 -
  79 -tabix:lib $(AOBJS)
  80 -               $(CC) $(CFLAGS) -o $@ $(AOBJS) -L. -ltabix -lm $(LIBPATH) -lz
  81 -
  82 -bgzip:bgzip.o bgzf.o knetfile.o
  83 -               $(CC) $(CFLAGS) -o $@ bgzip.o bgzf.o knetfile.o -lz
  84 +bgzip:$(BOBJS)
  85 +       $(LIBTOOL) $(LTFLAGS) --mode=link $(CC) $(CFLAGS) -o $@  $(BOBJS) $(LIBNAME) -lz
  86
  87  TabixReader.class:TabixReader.java
  88                 javac -cp .:sam.jar TabixReader.java
  89 @@ -57,7 +57,5 @@
  90  tabix.pdf:tabix.tex
  91                 pdflatex tabix.tex
  92
  93 -cleanlocal:
  94 -               rm -fr gmon.out *.o a.out *.dSYM $(PROG) *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
  95 -
  96 -clean:cleanlocal-recur
  97 +clean:
  98 +       $(LIBTOOL) --mode=clean rm -fr gmon.out $(LOBJS) $(AOBJS) $(BOBJS) a.out *.dSYM $(PROG) *~ tabix.aux tabix.log tabix.pdf *.class libtabix.la