Index of /~phe/temp2

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]2018-09-28-plateCUTnRUNtest-GATA1_1_500_250k_neb.2x25mers.hg19.unique.MACS2_peaks.narrowPeak.fa2019-01-08 17:26 3.5M 
[ ]18088_G1-mm10-M4-male_uniq.bw2017-08-03 16:18 8.9M 
[ ]18088_G2-mm10-M4-male_uniq.bw2017-08-03 16:18 6.8M 
[DIR]20516_ChIP-1_V-DCA-input_S00_L999_R1_001.fastq___FastQCk6/2018-02-27 19:04 -  
[DIR]20517_ChIP-2_V-DCA-H3K4me3-IP_S00_L999_R1_001.fastq___FastQCk6/2018-02-27 19:04 -  
[DIR]20518_ChIP-3_V-DCA-H3K27me3-IP_S00_L999_R1_001.fastq___FastQCk6/2018-02-27 19:04 -  
[DIR]20519_ChIP-4_V-DCA-H3K36me3-IP_S00_L999_R1_001.fastq___FastQCk6/2018-02-27 19:04 -  
[DIR]20520_ChIP-5_V-DCA-EZH2-IP_S00_L999_R1_001.fastq___FastQCk6/2018-02-27 19:04 -  
[DIR]20521_ChIP-6_V--input_S00_L999_R1_001.fastq___FastQCk6/2018-02-27 19:04 -  
[DIR]20522_ChIP-7_V--H3K4me3-IP_S00_L999_R1_001.fastq___FastQCk6/2018-02-27 19:04 -  
[DIR]20523_ChIP-8_V--H3K27me3-IP_S00_L999_R1_001.fastq___FastQCk6/2018-02-27 19:04 -  
[DIR]20524_ChIP-9_V--H3K36me3-IP_S00_L999_R1_001.fastq___FastQCk6/2018-02-27 19:04 -  
[DIR]20525_ChIP-10_V--EZH2-IP_S00_L999_R1_001.fastq___FastQCk6/2018-02-27 19:04 -  
[IMG]161130histone.png2017-01-17 11:17 487K 
[DIR]170102GeorgiMotifs/2017-01-02 20:23 -  
[ ]170115Plot.condor2017-01-16 01:04 2.4M 
[ ]170323Summary_Peng.pptx2017-03-25 20:03 113M 
[ ]170511Single Cells_Peng.pdf2017-06-08 18:08 52M 
[ ]170530andon Single Cell_Peng.pdf2017-06-08 18:08 26M 
[ ]170817LabMeeting_Peng.pptx2017-08-17 13:34 99M 
[ ]170905 Peng Results_doc_v12.docx2017-09-14 17:27 138M 
[ ]180212NewCells.xlsx2018-02-14 23:27 117M 
[ ]180216NewCells433FPKM_Disp1000P.xlsx2018-02-15 18:34 2.2M 
[ ]180216NewCells522FPKM_Disp1000P.xlsx2018-02-15 18:34 2.5M 
[ ]180216NewCells522FPKM_Disp1000PLoose.xlsx2018-02-15 18:35 1.9M 
[ ]180228Disp1000PLooseClean.mat2018-03-10 03:28 4.6M 
[TXT]180228Disp1000PLooseCleanFPKM.txt2018-03-10 03:28 1.4M 
[ ]180321DispersionClustergram.mat2018-03-21 15:39 5.5M 
[ ]180322Disp1000removedBadCells.mat2018-03-23 16:47 48M 
[ ]180915 ESPODpresent1.pptx2018-09-19 15:02 28M 
[TXT]190220DeepTree4000genes.txt2019-04-12 12:32 20K 
[TXT]190303C1DeepGenes.txt2019-03-29 14:38 22K 
[ ]190311MouseLimb10X.h5ad2019-03-11 09:55 4.5G 
[ ]190331MouseLimbC1.Robj2019-03-31 14:59 84M 
[TXT]190414 Project C1 onto 10X.html2019-05-31 13:52 39M 
[ ]190415MouseLimb10Xraw.h5ad.zip2019-07-04 04:42 1.0G 
[TXT]190430 C1 Monocle3 (1).html2019-06-01 09:04 2.7M 
[ ]190520ConfusedGenesConfusedCells.mat2019-05-20 13:27 16M 
[ ]190521ConfusedCellsMarkersWithChondrocytes.mat2019-05-21 01:38 17M 
[TXT]190717_10X_Monocle3-No_doublet_removal_190813NewServer.html2019-08-19 15:13 8.8M 
[ ]190717_10X_Monocle3_removal_190813NewServer-dim8_clean-Muscle.Robj2019-12-18 15:22 3.9G 
[ ]190717_10X_Monocle3_removal_190813NewServer-dim9_Muscle.Robj2019-12-18 15:26 3.9G 
[TXT]190717_10X_Monocle3_removal_190813NewServer.html2019-08-19 15:13 7.3M 
[ ]190812Muscle monocle3 alpha plots.pptx2019-08-18 13:38 108M 
[ ]190812Muscle monocle3 beta plots.pptx2019-08-11 16:06 49M 
[ ]190919MuscleDifferentialTF.pptx2019-09-19 06:44 119M 
[TXT]200515Process_Hongbo_limb.html2020-06-30 03:31 5.0M 
[ ]200515Process_Hongbo_limb.ipynb2020-06-30 03:33 168M 
[ ]200628Integrate_UCLA_Zhang_limb.ipynb2020-06-30 03:32 70M 
[ ]200629UCLA_Sanger_limb_integrate_after_SoupX_Scrublet_submerge.h5ad2020-06-29 05:45 835M 
[DIR]1002111Nalm6_ATACseq_R1_C1_S1_L008_FastQCk6R1/2017-01-17 18:03 -  
[DIR]1002111Nalm6_ATACseq_R1_C1_S1_L008_FastQCk6R2/2017-01-17 18:03 -  
[DIR]1002113CEM_ATACseq_R1_C3_S3_L008_FastQCk6R1/2017-01-17 18:03 -  
[DIR]1002113CEM_ATACseq_R1_C3_S3_L008_FastQCk6R2/2017-01-17 18:03 -  
[DIR]1002114Nalm6_ATACseq_R2_C4_S4_L008_FastQCk6R1/2017-01-17 18:03 -  
[DIR]1002114Nalm6_ATACseq_R2_C4_S4_L008_FastQCk6R2/2017-01-17 18:03 -  
[DIR]1002116CEM_ATACseq_R2_C6_S6_L008_FastQCk6R1/2017-01-17 18:03 -  
[DIR]1002116CEM_ATACseq_R2_C6_S6_L008_FastQCk6R2/2017-01-17 18:03 -  
[DIR]1002112697_ATACseq_R1_C2_S2_L008_FastQCk6R1/2017-01-17 18:03 -  
[DIR]1002112697_ATACseq_R1_C2_S2_L008_FastQCk6R2/2017-01-17 18:03 -  
[DIR]1002115697_ATACseq_R2_C5_S5_L008_FastQCk6R1/2017-01-17 18:03 -  
[DIR]1002115697_ATACseq_R2_C5_S5_L008_FastQCk6R2/2017-01-17 18:03 -  
[ ]AME.HOCOMOCOv10.Group10297.table2017-01-02 20:32 647  
[DIR]A_ETP_USPD16094801_HWJWVBBXX_L3_1.fq_FastQCk6/2019-03-10 13:45 -  
[DIR]A_ETP_USPD16094801_HWJWVBBXX_L3_1.fq_FastQCk6R1/2019-03-10 13:45 -  
[DIR]A_ETP_USPD16094801_HWJWVBBXX_L3_1.fq_FastQCk6R2/2019-03-10 13:45 -  
[DIR]A_ETP_USPD16094801_HWJWVBBXX_L3_FastQCk6/2019-03-10 13:45 -  
[DIR]A_ETP_USPD16094801_HWJWVBBXX_L3_FastQCk6R1/2019-03-10 13:45 -  
[DIR]A_ETP_USPD16094801_HWJWVBBXX_L3_FastQCk6R2/2019-03-10 13:45 -  
[ ]Aligned.sortedByCoord.out.bam2017-08-03 16:31 80M 
[ ]Aligned.sortedByCoord.out.bam.bai2017-08-03 16:31 1.8M 
[TXT]All.txt2017-03-23 14:15 129K 
[ ]Buckingham_Pax3_targets_LimbOnly.mat2017-08-26 11:10 636K 
[DIR]C1DataSetsForR/2019-04-14 09:43 -  
[DIR]C1FPKM/2019-04-22 08:12 -  
[TXT]C1_e10.5_mouse_lib_run1.txt2017-08-08 14:04 39K 
[TXT]C1_mouse_mesenchyme_run2,4-8_mm10_clean_bigwigs.txt2017-08-08 13:48 270K 
[DIR]C2/2020-09-30 06:43 -  
[ ]C2C12-mm10-M4-male_uniq.bw2017-03-30 14:25 78M 
[IMG]C2C12-mm10-M4-male_uniq.bw.heatmap.png2017-03-28 23:55 1.7M 
[IMG]C2C12-mm10-M4-male_uniq.bw.png2017-03-28 23:55 232K 
[DIR]CIS-BP-motif_logos/2017-06-26 12:44 -  
[ ]CISbg.mat2017-06-06 16:38 38K 
[IMG]ChIPLiverFlat.png2017-03-07 11:05 673K 
[IMG]ChIPNRSF.png2017-04-23 16:03 5.5M 
[IMG]ChIPliver.png2017-03-06 16:54 2.1M 
[TXT]Cluster20GO.txt2017-03-23 14:15 2.5K 
[ ]CufflinksgeneFPKMs2019-02-01 15:31 334  
[IMG]DNaseBrain.png2017-03-06 23:09 3.1M 
[IMG]DNaseBrainFlat.png2017-03-07 11:06 920K 
[IMG]DNaseliver.png2017-03-06 23:09 1.1M 
[IMG]DNaseliverFlat.png2017-03-07 11:07 455K 
[IMG]DNaselung.png2017-03-06 23:09 1.0M 
[IMG]DNaselungFlat.png2017-03-07 11:07 315K 
[IMG]DeepCoverage.png2018-01-21 21:29 52K 
[ ]Disp500NewOpti.mat2017-05-24 11:47 2.2M 
[ ]Disp500NewOptiPax7.mat2017-05-24 11:47 2.2M 
[ ]Disp500Old.mat2017-05-21 19:17 2.4M 
[ ]Disp500OldOpti.mat2017-05-22 19:41 2.4M 
[ ]Disp500OldPax7.mat2017-05-21 19:17 2.4M 
[ ]Disp500OldPax7Opti.mat2017-05-22 19:41 2.4M 
[ ]Disp1000NewOpti.mat2017-05-24 11:46 6.6M 
[ ]Disp1000NewOptiPax7.mat2017-05-24 11:46 6.6M 
[ ]Disp1000Old.mat2017-05-21 19:17 6.9M 
[ ]Disp1000OldOpti.mat2017-05-22 19:41 6.9M 
[ ]Disp1000OldPax7.mat2017-05-21 19:17 11M 
[ ]Disp1000OldPax7Opti.mat2017-05-22 19:41 6.9M 
[ ]Disp1000OldPax7Sox5Sox6Sox9Opti.mat2017-05-24 17:07 7.0M 
[ ]Disp1000P.mat2018-02-12 15:57 14M 
[ ]Disp1000P2_loose.mat2018-02-12 15:57 13M 
[ ]Disp1000PAll.mat2017-07-05 12:32 96M 
[ ]Disp1000PAnnotated.mat2017-07-04 14:26 19M 
[ ]Disp1000PMuscleTF.mat2017-07-04 14:26 1.6M 
[ ]Disp1000POsteoChondroTF.mat2017-07-04 14:26 2.1M 
[ ]Disp1000PPax3WorldAll.mat2017-07-08 16:26 30M 
[ ]Disp1000PPax3WorldTF.mat2017-07-08 16:03 3.1M 
[ ]Disp1000PUnknownP.mat2017-07-04 14:26 4.8M 
[ ]Disp1000PUnknownPOsteoUnP.mat2017-07-04 14:26 6.2M 
[ ]Disp1000PUnknownPTF.mat2017-07-04 14:26 7.3M 
[ ]Disp1000Pax7_170530.mat2017-05-30 15:12 7.5M 
[ ]Disp1000PlusKnownThenTF_170605.mat2017-06-05 12:15 3.1M 
[ ]Disp1000PlusKnown_170605.mat2017-06-05 12:15 1.4M 
[ ]Disp1000PlusMuscleTF_170617.mat2017-06-17 23:08 3.1M 
[ ]Disp1000PlusOsteoAll_170629.mat2017-06-29 12:58 42M 
[ ]Disp1000PlusOsteoTFMarked_170626.mat2017-06-26 20:45 6.8M 
[ ]Disp1000PlusThenOsteoUnknown1000_170630.mat2017-06-30 16:49 9.7M 
[ ]Disp1000Plus_10.5.mat2017-06-12 20:44 857K 
[ ]Disp1000Plus_11.5.mat2017-06-12 20:44 403K 
[ ]Disp1000Plus_11.mat2017-06-12 20:44 293K 
[ ]Disp1000Plus_12.5.mat2017-06-12 20:44 473K 
[ ]Disp1000Plus_13.5.mat2017-06-12 20:44 845K 
[ ]Disp1000Plus_170604.mat2017-06-04 20:04 7.9M 
[ ]Disp1000Plus_KnownUniverse_TF_170604.mat2017-06-05 11:34 3.1M 
[ ]Disp1000Plus_TF_170604.mat2017-06-14 12:42 10M 
[TXT]Disp1000Plus_TF_170604.txt2017-06-04 23:45 3.3M 
[ ]Disp1000Plus_TF_170604.xlsx2017-06-04 23:45 4.6M 
[ ]Disp1000_170530.mat2017-05-30 15:12 7.5M 
[ ]Disp1000_FilteredTranscriptome_170531.mat2017-05-31 17:42 119M 
[ ]Disp1000_PickedGenes_170531.mat2017-05-31 17:42 239K 
[ ]Disp1000_TF_170531.mat2017-05-31 17:42 6.7M 
[ ]Disp1000_UnFilteredTranscriptome_170531.mat2017-06-01 23:34 198M 
[ ]Disp2000NewOpti.mat2017-05-24 11:46 14M 
[ ]Disp2000NewOptiPax7.mat2017-05-24 11:47 14M 
[ ]Disp2000Old.mat2017-05-21 19:17 15M 
[ ]Disp2000OldOpti.mat2017-05-22 19:41 15M 
[ ]Disp2000OldPax7.mat2017-05-21 19:17 23M 
[ ]Disp2000OldPax7Opti.mat2017-05-22 19:41 15M 
[ ]Disp2000OldPax7Sox5Sox6Sox9Opti.mat2017-05-24 17:07 15M 
[ ]Dispersion2000BarbaraThresholding.mat2017-05-20 19:32 6.5M 
[ ]DynGenes0.1_10.std.annotated.mat2018-06-19 00:12 60M 
[ ]ENCFF085CEM.bigBed2018-06-18 17:17 4.0M 
[ ]ENCFF085CEM.broad.hotspots.bigBed2018-06-18 17:17 8.8K 
[ ]ENCFF484XZF.bigBed2018-06-18 17:17 2.2M 
[ ]ENCFF484XZF.broad.hotspots.bigBed2018-06-18 17:17 6.1K 
[ ]ENCFF625UED.bigBed2018-06-18 17:17 1.5M 
[ ]ENCFF625UED.narrow.bigBed2018-06-18 17:17 5.1K 
[ ]ENCFF854PHU.bigBed2018-06-18 17:17 2.2M 
[ ]ENCFF854PHU.narrow.bigBed2018-06-18 17:17 2.2M 
[TXT]EarlyMyoblast1.txt2017-08-20 23:01 895  
[TXT]EarlyMyoblast2.txt2017-08-20 23:01 494  
[IMG]Egr1cluster.bmp2017-05-29 19:37 1.4M 
[ ]EnrichmentIP_FT.neg.wig2017-11-08 23:30 66M 
[ ]EnrichmentIP_FT.pos.wig2017-11-08 23:29 65M 
[DIR]FB_1_E14_5.run_1344/2016-12-01 14:52 -  
[TXT]GENCODE.ame.html2017-05-12 17:21 353K 
[IMG]GROseqUniqFlat.png2017-02-26 16:55 216K 
[ ]GROseqUniqFlat.tab2017-02-24 17:31 13K 
[IMG]GROseqUniqFlatHigh.png2017-02-24 20:39 847K 
[ ]GROseqUniqFlatHigh.tab2017-02-24 20:39 86K 
[IMG]GROseqUniqFlatLow.png2017-02-09 16:55 112K 
[IMG]GROseqUniqFlatMed.png2017-02-09 16:55 113K 
[ ]Global Clustergram.mat2017-05-29 19:13 265M 
[TXT]Group7155.txt2017-03-23 14:15 3.7K 
[TXT]Group7224.txt2017-03-23 14:15 2.6K 
[TXT]Group9350.txt2017-03-23 14:15 1.9K 
[TXT]Group9642.txt2017-03-23 14:15 2.2K 
[TXT]Group9851.txt2017-03-23 14:15 146  
[TXT]Group9905.txt2017-03-23 14:15 131  
[TXT]Group9927.txt2017-03-23 14:15 651  
[TXT]Group9996.txt2017-03-23 14:15 136  
[TXT]Group10297.txt2017-03-23 14:15 636  
[TXT]Group10334.txt2017-03-23 14:15 302  
[TXT]Group10494.txt2017-03-23 14:15 524  
[TXT]Group10553.txt2017-03-23 14:15 74  
[TXT]Group10678.txt2017-03-23 14:15 130  
[TXT]Group10720.txt2017-03-23 14:15 305  
[TXT]Group11183.txt2017-03-23 14:15 140  
[TXT]Group11526.txt2017-03-23 14:15 1.0K 
[TXT]Group11603.txt2017-03-23 14:15 522  
[TXT]Group11859.txt2017-03-23 14:15 1.7K 
[TXT]Group11975.txt2017-03-23 14:15 207  
[TXT]Group12267.txt2017-03-23 14:15 897  
[TXT]Group12297.txt2017-03-23 14:15 944  
[TXT]Group12497.txt2017-03-23 14:15 649  
[TXT]Group12516.txt2017-03-23 14:15 395  
[TXT]Group12520.txt2017-03-23 14:15 628  
[TXT]Group12589.txt2017-03-23 14:15 292  
[TXT]Group12614.txt2017-03-23 14:15 444  
[TXT]Group12623.txt2017-03-23 14:15 141  
[TXT]Group12724.txt2017-03-23 14:15 234  
[TXT]Group12780.txt2017-03-23 14:15 528  
[TXT]Group12937.txt2017-03-23 14:15 882  
[TXT]Group13014.txt2017-03-23 14:15 1.3K 
[TXT]Group13311.txt2017-03-23 14:15 146  
[TXT]Group13435.txt2017-03-23 14:15 183  
[TXT]Group13460.txt2017-03-23 14:15 364  
[TXT]Group13472.txt2017-03-23 14:15 307  
[TXT]Group13491.txt2017-03-23 14:15 185  
[TXT]Group13573.txt2017-03-23 14:15 1.0K 
[TXT]Group13576.txt2017-03-23 14:15 1.9K 
[TXT]Group13595.txt2017-03-23 14:15 258  
[TXT]Group13597.txt2017-03-23 14:15 738  
[TXT]Group13611.txt2017-03-23 14:15 462  
[TXT]Group13646.txt2017-03-23 14:15 196  
[TXT]Group13669.txt2017-03-23 14:15 520  
[TXT]Group13679.txt2017-03-23 14:15 83  
[TXT]Group13776.txt2017-03-23 14:15 3.0K 
[TXT]Group13819.txt2017-03-23 14:15 2.8K 
[TXT]Group13837.txt2017-03-23 14:15 1.4K 
[TXT]Group13877.txt2017-03-23 14:15 121  
[TXT]Group13878.txt2017-03-23 14:15 267  
[TXT]Group13907.txt2017-03-23 14:15 455  
[TXT]Group13915.txt2017-03-23 14:15 963  
[TXT]Group14023.txt2017-03-23 14:15 744  
[TXT]Group14024.txt2017-03-23 14:15 156  
[TXT]Group14104.txt2017-03-23 14:15 7.4K 
[TXT]Group14155.txt2017-03-23 14:15 576  
[TXT]Group14180.txt2017-03-23 14:15 350  
[TXT]Group14223.txt2017-03-23 14:15 4.4K 
[TXT]Group14225.txt2017-03-23 14:15 22K 
[TXT]Group14244.txt2017-03-23 14:15 1.7K 
[TXT]Group14269.txt2017-03-23 14:15 398  
[TXT]Group14347.txt2017-03-23 14:15 4.0K 
[TXT]Group14349.txt2017-03-23 14:15 98  
[TXT]Group14361.txt2017-03-23 14:15 96  
[TXT]Group14390.txt2017-03-23 14:15 2.7K 
[TXT]Group14409.txt2017-03-23 14:15 289  
[TXT]Group14424.txt2017-03-23 14:15 644  
[TXT]Group14489.txt2017-03-23 14:15 4.1K 
[TXT]Group14496.txt2017-03-23 14:15 313  
[TXT]Group14525.txt2017-03-23 14:15 4.9K 
[TXT]Group14547.txt2017-03-23 14:15 91  
[TXT]Group14574.txt2017-03-23 14:15 1.8K 
[TXT]Group14629.txt2017-03-23 14:15 272  
[TXT]Group14665.txt2017-03-23 14:15 254  
[TXT]Group14688.txt2017-03-23 14:15 636  
[TXT]Group14762.txt2017-03-23 14:15 632  
[TXT]Group14769.txt2017-03-23 14:15 232  
[TXT]Group14864.txt2017-03-23 14:15 141  
[TXT]Group15007.txt2017-03-23 14:15 1.7K 
[TXT]Group15044.txt2017-03-23 14:15 2.2K 
[TXT]Group15090.txt2017-03-23 14:15 476  
[TXT]Group15103.txt2017-03-23 14:15 1.7K 
[TXT]Group15112.txt2017-03-23 14:15 420  
[TXT]Group15135.txt2017-03-23 14:15 97  
[TXT]Group15142.txt2017-03-23 14:15 1.5K 
[TXT]Group15251.txt2017-03-23 14:15 525  
[TXT]Group15262.txt2017-03-23 14:15 2.4K 
[TXT]Group15301.txt2017-03-23 14:15 7.9K 
[TXT]Group15314.txt2017-03-23 14:15 234  
[TXT]Group15341.txt2017-03-23 14:15 1.8K 
[TXT]Group15357.txt2017-03-23 14:15 738  
[TXT]Group15391.txt2017-03-23 14:15 17K 
[TXT]Group15402.txt2017-03-23 14:15 883  
[TXT]Group15418.txt2017-03-23 14:15 1.0K 
[TXT]Group15460.txt2017-03-23 14:15 15K 
[TXT]Group15468.txt2017-03-23 14:15 1.7K 
[TXT]Group15475.txt2017-03-23 14:15 1.1K 
[TXT]Group15544.txt2017-03-23 14:15 704  
[TXT]Group15551.txt2017-03-23 14:15 2.0K 
[TXT]Group15555.txt2017-03-23 14:15 946  
[TXT]Group15560.txt2017-03-23 14:15 327  
[TXT]Group15564.txt2017-03-23 14:15 1.4K 
[TXT]Group15595.txt2017-03-23 14:15 527  
[TXT]Group15597.txt2017-03-23 14:15 3.9K 
[TXT]Group15603.txt2017-03-23 14:15 1.0K 
[TXT]Group15620.txt2017-03-23 14:15 6.4K 
[TXT]Group15627.txt2017-03-23 14:15 10K 
[TXT]Group15628.txt2017-03-23 14:15 5.6K 
[TXT]Group15637.txt2017-03-23 14:15 4.0K 
[TXT]Group15662.txt2017-03-23 14:15 709  
[TXT]Group15667.txt2017-03-23 14:15 756  
[TXT]Group15692.txt2017-03-23 14:15 3.7K 
[TXT]Group15704.txt2017-03-23 14:15 2.7K 
[TXT]Group15714.txt2017-03-23 14:15 347  
[TXT]Group15716.txt2017-03-23 14:15 4.9K 
[TXT]GroupFlatHigh.txt2017-03-23 14:15 7.3K 
[IMG]GroupFlatHighBFe13.5.png2017-02-12 13:11 847K 
[TXT]GroupFlatLow.txt2017-03-23 14:15 12K 
[IMG]GroupFlatLowBFe13.5.png2017-02-12 13:11 839K 
[TXT]GroupFlatMed.txt2017-03-23 14:15 21K 
[IMG]GroupFlatMedBFe13.5.png2017-02-12 13:11 760K 
[IMG]H1-ESC.png2017-04-20 16:13 7.5M 
[ ]HOCObg.mat2017-06-06 16:38 31K 
[IMG]HSMMB.png2017-04-20 16:13 8.1M 
[IMG]HSMMT.png2017-04-20 16:13 7.2M 
[ ]JASP.mat2017-06-06 16:38 24K 
[IMG]K562.png2017-04-20 16:13 7.3M 
[TXT]LateMyoblast.txt2017-08-20 23:01 965  
[ ]Limb_EarlyMyoblast.mat2017-08-26 11:11 1.4M 
[ ]Limb_LateMyoblast.mat2017-08-26 11:11 831K 
[ ]LooseThresholdClustergram170831.mat2017-08-31 19:44 11M 
[ ]MEF_GROseq_rep1-mm10-M4-male_uniq.bw2017-03-30 14:25 22M 
[IMG]MEF_GROseq_rep1-mm10-M4-male_uniq.bw.heatmap.png2017-03-28 23:55 910K 
[IMG]MEF_GROseq_rep1-mm10-M4-male_uniq.bw.png2017-03-28 23:55 102K 
[ ]MEF_GROseq_rep2-mm10-M4-male_uniq.bw2017-03-30 14:25 23M 
[IMG]MEF_GROseq_rep2-mm10-M4-male_uniq.bw.heatmap.png2017-03-28 23:55 939K 
[IMG]MEF_GROseq_rep2-mm10-M4-male_uniq.bw.png2017-03-28 23:55 109K 
[ ]MESC_GROseq_rep1-mm10-M4-male_uniq.bw2017-03-30 14:25 12M 
[IMG]MESC_GROseq_rep1-mm10-M4-male_uniq.bw.heatmap.png2017-03-28 23:55 796K 
[IMG]MESC_GROseq_rep1-mm10-M4-male_uniq.bw.png2017-03-28 23:55 85K 
[ ]MESC_GROseq_rep2-mm10-M4-male_uniq.bw2017-03-30 14:25 13M 
[IMG]MESC_GROseq_rep2-mm10-M4-male_uniq.bw.heatmap.png2017-03-28 23:55 825K 
[IMG]MESC_GROseq_rep2-mm10-M4-male_uniq.bw.png2017-03-28 23:55 103K 
[ ]MESC_GROseq_rep3-mm10-M4-male_uniq.bw2017-03-30 14:25 26M 
[IMG]MESC_GROseq_rep3-mm10-M4-male_uniq.bw.heatmap.png2017-03-28 23:55 1.0M 
[IMG]MESC_GROseq_rep3-mm10-M4-male_uniq.bw.png2017-03-28 23:55 122K 
[IMG]Midbrain-NRSF.png2018-01-06 21:56 9.3M 
[IMG]Midbrain-NRSF2.png2018-01-06 21:56 9.3M 
[ ]Mouse10XPoint4Clg.mat2019-05-11 15:56 172M 
[ ]Mouse10X_point4_with_synthetic.mat2019-05-12 14:26 183M 
[ ]MyoblastBuckingham.pdf2017-08-20 23:01 2.6M 
[IMG]NHDF.png2017-04-20 16:13 8.9M 
[ ]OneWayClusteringNew.mat2017-05-14 17:17 3.4M 
[IMG]Outersect_Cluster34.png2017-04-23 16:03 5.2M 
[IMG]Outersect_NRSF.png2017-04-23 16:03 5.6M 
[ ]RSEMFPKMtime.gene2019-10-14 14:48 55M 
[ ]RSEMResults.xlsx2017-05-10 12:01 128M 
[ ]RSEMTPMtime.gene2019-10-14 14:49 55M 
[ ]RSEMcounttime2017-11-22 12:56 14K 
[ ]RSEMcounttime.gene2019-10-14 14:50 59M 
[ ]ReadCounts2018-04-26 20:15 349K 
[ ]Rsem171213.condor2018-01-25 13:19 1.4K 
[IMG]S1_TK01_UAS_opa_14B.dm6.30mer.unique.dup.bam.fragmentSize.png2020-04-05 04:56 20K 
[IMG]S1_TK01_UAS_opa_14B.dm6.30mer.unique.dup.nochrM.bam.fragmentSize.png2020-04-05 04:56 20K 
[IMG]S1_TK01_UAS_opa_14B.dm6.30mer.unique.nochrM.bam.fragmentSize.png2020-04-05 04:56 20K 
[IMG]S2_TK02_TK01_replicate.dm6.30mer.unique.dup.bam.fragmentSize.png2020-04-05 04:56 20K 
[IMG]S2_TK02_TK01_replicate.dm6.30mer.unique.dup.nochrM.bam.fragmentSize.png2020-04-05 04:56 20K 
[IMG]S2_TK02_TK01_replicate.dm6.30mer.unique.nochrM.bam.fragmentSize.png2020-04-05 04:56 20K 
[IMG]S3_TK03_TK01:02_replicate.dm6.30mer.unique.dup.bam.fragmentSize.png2020-04-05 04:56 24K 
[IMG]S3_TK03_TK01:02_replicate.dm6.30mer.unique.dup.nochrM.bam.fragmentSize.png2020-04-05 04:56 25K 
[IMG]S3_TK03_TK01:02_replicate.dm6.30mer.unique.nochrM.bam.fragmentSize.png2020-04-05 04:56 24K 
[IMG]S4_TK05_opa_mutant_14D.dm6.30mer.unique.dup.bam.fragmentSize.png2020-04-05 04:56 23K 
[IMG]S4_TK05_opa_mutant_14D.dm6.30mer.unique.dup.nochrM.bam.fragmentSize.png2020-04-05 04:56 24K 
[IMG]S4_TK05_opa_mutant_14D.dm6.30mer.unique.nochrM.bam.fragmentSize.png2020-04-05 04:56 23K 
[IMG]S5_TK08_shopa_14D.dm6.30mer.unique.dup.bam.fragmentSize.png2020-04-05 04:56 24K 
[IMG]S5_TK08_shopa_14D.dm6.30mer.unique.dup.nochrM.bam.fragmentSize.png2020-04-05 04:56 24K 
[IMG]S5_TK08_shopa_14D.dm6.30mer.unique.nochrM.bam.fragmentSize.png2020-04-05 04:56 24K 
[IMG]S6_TK09_TK08_replicate.dm6.30mer.unique.dup.bam.fragmentSize.png2020-04-05 04:56 23K 
[IMG]S6_TK09_TK08_replicate.dm6.30mer.unique.dup.nochrM.bam.fragmentSize.png2020-04-05 04:56 23K 
[IMG]S6_TK09_TK08_replicate.dm6.30mer.unique.nochrM.bam.fragmentSize.png2020-04-05 04:56 23K 
[IMG]S7_TK10_control_14D.dm6.30mer.unique.dup.bam.fragmentSize.png2020-04-05 04:56 18K 
[IMG]S7_TK10_control_14D.dm6.30mer.unique.dup.nochrM.bam.fragmentSize.png2020-04-05 04:56 18K 
[IMG]S7_TK10_control_14D.dm6.30mer.unique.nochrM.bam.fragmentSize.png2020-04-05 04:56 22K 
[IMG]S8_TK11_TK10_replicate.dm6.30mer.unique.dup.bam.fragmentSize.png2020-04-05 04:56 23K 
[IMG]S8_TK11_TK10_replicate.dm6.30mer.unique.dup.nochrM.bam.fragmentSize.png2020-04-05 04:56 23K 
[IMG]S8_TK11_TK10_replicate.dm6.30mer.unique.nochrM.bam.fragmentSize.png2020-04-05 04:56 23K 
[IMG]S9_19740_control_14D_replicate.dm6.30mer.unique.dup.bam.fragmentSize.png2020-04-05 04:56 21K 
[IMG]S9_19740_control_14D_replicate.dm6.30mer.unique.dup.nochrM.bam.fragmentSize.png2020-04-05 04:56 25K 
[IMG]S9_19740_control_14D_replicate.dm6.30mer.unique.nochrM.bam.fragmentSize.png2020-04-05 04:56 24K 
[IMG]S10_20823_shopa_14D_replicate.dm6.30mer.unique.dup.bam.fragmentSize.png2020-04-05 04:56 22K 
[IMG]S10_20823_shopa_14D_replicate.dm6.30mer.unique.dup.nochrM.bam.fragmentSize.png2020-04-05 04:56 22K 
[IMG]S10_20823_shopa_14D_replicate.dm6.30mer.unique.dup.nochrM.fragmentSize.png2020-04-05 04:56 24K 
[IMG]S10_20823_shopa_14D_replicate.dm6.30mer.unique.nochrM.bam.fragmentSize.png2020-04-05 04:56 22K 
[IMG]S11_21286_shopa_14D_replicate.dm6.30mer.unique.dup.bam.fragmentSize.png2020-04-05 04:56 24K 
[IMG]S11_21286_shopa_14D_replicate.dm6.30mer.unique.dup.nochrM.bam.fragmentSize.png2020-04-05 04:56 24K 
[IMG]S11_21286_shopa_14D_replicate.dm6.30mer.unique.nochrM.bam.fragmentSize.png2020-04-05 04:56 24K 
[IMG]S12_TK13_control_14B.dm6.30mer.unique.dup.bam.fragmentSize.png2020-04-05 04:56 21K 
[IMG]S12_TK13_control_14B.dm6.30mer.unique.dup.nochrM.bam.fragmentSize.png2020-04-05 04:56 22K 
[IMG]S12_TK13_control_14B.dm6.30mer.unique.nochrM.bam.fragmentSize.png2020-04-05 04:56 22K 
[IMG]S13_TK14_TK10:11_replicate.dm6.30mer.unique.dup.bam.fragmentSize.png2020-04-05 04:56 21K 
[IMG]S13_TK14_TK10:11_replicate.dm6.30mer.unique.dup.nochrM.bam.fragmentSize.png2020-04-05 04:56 22K 
[IMG]S13_TK14_TK10:11_replicate.dm6.30mer.unique.nochrM.bam.fragmentSize.png2020-04-05 04:56 21K 
[IMG]S14_TK15_TK13_replicate.dm6.30mer.unique.dup.bam.fragmentSize.png2020-04-05 04:56 20K 
[IMG]S14_TK15_TK13_replicate.dm6.30mer.unique.dup.nochrM.bam.fragmentSize.png2020-04-05 04:56 21K 
[IMG]S14_TK15_TK13_replicate.dm6.30mer.unique.nochrM.bam.fragmentSize.png2020-04-05 04:56 21K 
[DIR]SE731FastqC/2018-01-17 12:39 -  
[DIR]SL161595.fastqp300_Mouse_Forebrain_e14.5_Rep1FastQCk6/2017-01-17 17:09 -  
[DIR]SL161596.fastqp300_Mouse_Forebrain_e14.5_Rep2FastQCk6/2017-01-17 17:09 -  
[DIR]SL161597.fastqp300_Mouse_Midbrain_e14.5_Rep1FastQCk6/2017-01-17 17:09 -  
[DIR]SL161598.fastqp300_Mouse_Midbrain_e14.5_Rep2FastQCk6/2017-01-17 17:09 -  
[DIR]SL161599.fastqp300_Mouse_Hindbrain_e14.5_Rep1FastQCk6/2017-01-17 17:09 -  
[DIR]SL161600.fastqp300_Mouse_Hindbrain_e14.5_Rep2FastQCk6/2017-01-17 17:09 -  
[DIR]SL161601.fastqp300_Mouse_Neural_Tube_e14.5_Rep1FastQCk6/2017-01-17 17:09 -  
[DIR]SL161602.fastqp300_Mouse_Neural_Tube_e14.5_Rep2FastQCk6/2017-01-17 17:09 -  
[DIR]SL161603.fastqp300_Mouse_Limb_e14.5_Rep1FastQCk6/2017-01-17 17:09 -  
[DIR]SL161604.fastqp300_Mouse_Limb_e14.5_Rep2FastQCk6/2017-01-17 17:09 -  
[DIR]SL161605.fastqp300_Mouse_Cranioface_e14.5_Rep1FastQCk6/2017-01-17 17:09 -  
[DIR]SL161606.fastqp300_Mouse_Cranioface_e14.5_Rep2FastQCk6/2017-01-17 17:09 -  
[DIR]SL161607.fastqp300_Mouse_Heart_e14.5_Rep1FastQCk6/2017-01-17 17:09 -  
[DIR]SL161608.fastqp300_Mouse_Heart_e14.5_Rep2FastQCk6/2017-01-17 17:09 -  
[DIR]SL161609.fastqp300_Mouse_Lung_e14.5_Rep1FastQCk6/2017-01-17 17:09 -  
[DIR]SL161610.fastqp300_Mouse_Lung_e14.5_Rep2FastQCk6/2017-01-17 17:09 -  
[DIR]SL161611.fastqp300_Mouse_Midbrain_P0_Rep1FastQCk6/2017-01-17 17:09 -  
[DIR]SL161612.fastqp300_Mouse_Midbrain_P0_Rep2FastQCk6/2017-01-17 17:09 -  
[DIR]SL161613.fastqp300_Mouse_Neural_Tube_P0_Rep1FastQCk6/2017-01-17 17:09 -  
[DIR]SL161614.fastqp300_Mouse_Neural_Tube_P0_Rep2FastQCk6/2017-01-17 17:09 -  
[DIR]SL161615.fastqp300_Mouse_Liver_e14.5_Rep1FastQCk6/2017-01-17 17:09 -  
[DIR]SL161616.fastqp300_Mouse_Liver_e14.5_Rep2FastQCk6/2017-01-17 17:09 -  
[DIR]SL161617.fastqPol2_Mouse_Liver_e14.5_Rep1FastQCk6/2017-01-17 17:09 -  
[DIR]SL161618.fastqPol2_Mouse_Liver_e14.5_Rep2FastQCk6/2017-01-17 17:09 -  
[DIR]SL161619.fastqp300_Mouse_Forebrain_e14.5_Rep1_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161620.fastqp300_Mouse_Forebrain_e14.5_Rep2_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161621.fastqp300_Mouse_Midbrain_e14.5_Rep1_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161622.fastqp300_Mouse_Midbrain_e14.5_Rep2_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161623.fastqp300_Mouse_Hindbrain_e14.5_Rep1_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161624.fastqp300_Mouse_Hindbrain_e14.5_Rep2_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161625.fastqp300_Mouse_Neural_Tube_e14.5_Rep1_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161626.fastqp300_Mouse_Neural_Tube_e14.5_Rep2_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161627.fastqp300_Mouse_Limb_e14.5_Rep1_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161628.fastqp300_Mouse_Limb_e14.5_Rep2_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161629.fastqp300_Mouse_Cranioface_e14.5_Rep1_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161630.fastqp300_Mouse_Cranioface_e14.5_Rep2_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161631.fastqp300_Mouse_Heart_e14.5_Rep1_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161632.fastqp300_Mouse_Heart_e14.5_Rep2_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161633.fastqp300_Mouse_Lung_e14.5_Rep1_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161634.fastqp300_Mouse_Lung_e14.5_Rep2_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161635.fastqp300_Mouse_Midbrain_P0_Rep1_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161636.fastqp300_Mouse_Midbrain_P0_Rep2_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161637.fastqp300_Mouse_Neural_Tube_P0_Rep1_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SL161638.fastqp300_Mouse_Neural_Tube_P0_Rep2_xlinkFastQCk6/2017-01-17 17:09 -  
[DIR]SRX037955GSM651870_Nascent_RNA_sequencing_of_C2C12_cellFastQCk6/2016-12-04 19:24 -  
[DIR]SRX040536GSM665994_MESC_GROseq_Rep1FastQCk6/2017-03-09 11:57 -  
[DIR]SRX040537GSM665995_MESC_GROseq_Rep2FastQCk6/2017-03-09 11:57 -  
[DIR]SRX040538GSM665996_MESC_GROseq_Rep3FastQCk6/2017-03-09 15:11 -  
[DIR]SRX040539GSM665997_MEF_GROseq_Rep1FastQCk6/2017-03-09 15:11 -  
[DIR]SRX040540GSM665998_MEF_GROseq_Rep2FastQCk6/2017-03-09 15:11 -  
[DIR]SRX105574GSM832606_DSP1_APFastQCk6/2017-05-25 19:59 -  
[DIR]SRX487508GSM1347655_mesnt0h1FastQCk6/2017-03-09 11:46 -  
[DIR]SRX2487650GSM2454924_BM_DN3_aBcl11b-ChIP-rep1FastQCk6/2017-04-09 22:06 -  
[DIR]SRX2487651GSM2454925_BM_DN3_1__input-rep1FastQCk6/2017-04-09 22:06 -  
[DIR]SRX2487652GSM2454926_BM_DN3_aBcl11b-ChIP-rep2FastQCk6/2017-04-09 22:06 -  
[DIR]SRX2487653GSM2454927_BM_DN3_1__input-rep2FastQCk6/2017-04-09 22:06 -  
[ ]STAR171213.condor2018-01-25 13:19 2.4K 
[ ]STAR180701.condor2018-07-01 20:37 2.5K 
[DIR]Sample_16421Illumina_index__708_503_Paired_ends_2410004N09RikHomoMut4FastQCk6R1/2018-07-14 15:07 -  
[DIR]Sample_16608Index__3_P2C2_aH3K27me3__2FastQCk6/2017-07-29 13:30 -  
[DIR]Sample_16677/2017-01-21 12:39 -  
[ ]Sample_16677Index__14_20160127_15h_spri_low.Spur3.1.36.P5-1mer.unique.bigWig2017-01-21 18:52 44K 
[ ]Sample_16677Index__14_20160127_15h_spri_low.Spur3.1.36.P7-1mer.unique.bigWig2017-01-21 18:52 112K 
[ ]Sample_16677Index__14_20160127_15h_spri_low.Spur4.2.36.P5-1mer.unique.bigWig2017-01-21 18:52 44K 
[ ]Sample_16677Index__14_20160127_15h_spri_low.Spur4.2.36.P7-1mer.unique.bigWig2017-01-21 18:52 113K 
[ ]Sample_16677Index__14_20160127_15h_spri_low.fastq2017-01-21 12:05 497M 
[ ]Sample_16677Index__14_20160127_15h_spri_low.strPur2.36.P5-1mer.unique.bigWig2017-01-21 18:52 37K 
[ ]Sample_16677Index__14_20160127_15h_spri_low.strPur2.36.P7-1mer.unique.bigWig2017-01-21 18:52 86K 
[ ]Sample_16677Index__14_20160127_15h_spri_lowallfastq1002017-01-21 12:06 497M 
[DIR]Sample_16803/2017-01-21 12:39 -  
[ ]Sample_16803Index__25_20160225_24h_cut.Spur3.1.36.P5-1mer.unique.bigWig2017-01-21 18:52 29K 
[ ]Sample_16803Index__25_20160225_24h_cut.Spur3.1.36.P7-1mer.unique.bigWig2017-01-21 18:52 103K 
[ ]Sample_16803Index__25_20160225_24h_cut.Spur4.2.36.P5-1mer.unique.bigWig2017-01-21 18:52 29K 
[ ]Sample_16803Index__25_20160225_24h_cut.Spur4.2.36.P7-1mer.unique.bigWig2017-01-21 18:52 104K 
[ ]Sample_16803Index__25_20160225_24h_cut.strPur2.36.P5-1mer.unique.bigWig2017-01-21 18:52 27K 
[ ]Sample_16803Index__25_20160225_24h_cut.strPur2.36.P7-1mer.unique.bigWig2017-01-21 18:52 81K 
[ ]Sample_16803Index__25_20160225_24h_cutallfastq1002017-01-21 12:06 201M 
[DIR]Sample_16804/2017-01-21 12:39 -  
[ ]Sample_16804Index__27_20160225_48h-1_cut.Spur3.1.36.P5-1mer.unique.bigWig2017-01-21 18:52 35K 
[ ]Sample_16804Index__27_20160225_48h-1_cut.Spur3.1.36.P7-1mer.unique.bigWig2017-01-21 18:52 72K 
[ ]Sample_16804Index__27_20160225_48h-1_cut.Spur4.2.36.P5-1mer.unique.bigWig2017-01-21 18:52 35K 
[ ]Sample_16804Index__27_20160225_48h-1_cut.Spur4.2.36.P7-1mer.unique.bigWig2017-01-21 18:52 73K 
[ ]Sample_16804Index__27_20160225_48h-1_cut.strPur2.36.P5-1mer.unique.bigWig2017-01-21 18:52 31K 
[ ]Sample_16804Index__27_20160225_48h-1_cut.strPur2.36.P7-1mer.unique.bigWig2017-01-21 18:52 42K 
[ ]Sample_16804Index__27_20160225_48h-1_cutallfastq1002017-01-21 12:06 251M 
[ ]Sample_17414Index__7_phox2b_72h_pos1.danRer10.50merAligned.toTranscriptome.out.rsem.genes.results2017-11-24 22:19 7.3M 
[ ]Sample_17414Index__7_phox2b_72h_pos1.danRer10.50merAligned.toTranscriptome.out.rsem.isoforms.results2017-11-24 22:19 7.9M 
[ ]Sample_17414Index__7_phox2b_72h_pos1.danRer10.50merAligned.toTranscriptome.sorted.rsem.genenames.results2017-11-27 00:20 4.8M 
[ ]Sample_17414Index__7_phox2b_72h_pos1.danRer10.50merAligned.toTranscriptome.sorted.rsem.genes.results2017-11-27 00:11 4.5M 
[ ]Sample_17414Index__7_phox2b_72h_pos1.danRer10.50merAligned.toTranscriptome.sorted.rsem.isoforms.results2017-11-27 00:11 7.7M 
[ ]Sample_17424Index__9_phox2b_72h_pos2.danRer10.50mer.STAR.All.bigWig2017-12-09 23:00 83M 
[ ]Sample_17424Index__9_phox2b_72h_pos2.danRer10.50merAligned.toTranscriptome.out.rsem.genes.results2017-11-24 22:19 5.2M 
[ ]Sample_17424Index__9_phox2b_72h_pos2.danRer10.50merAligned.toTranscriptome.out.rsem.isoforms.results2017-11-24 22:19 5.8M 
[ ]Sample_17424Index__9_phox2b_72h_pos2.danRer10.50merAligned.toTranscriptome.sorted.rsem.genenames.results2017-11-27 00:20 3.7M 
[ ]Sample_17424Index__9_phox2b_72h_pos2.danRer10.50merAligned.toTranscriptome.sorted.rsem.genes.results2017-11-27 00:11 3.4M 
[ ]Sample_17424Index__9_phox2b_72h_pos2.danRer10.50merAligned.toTranscriptome.sorted.rsem.isoforms.results2017-11-27 00:11 5.8M 
[DIR]Sample_18555Index__1_Dbh_SNS_RNAseq_1_FastQCk6/2017-04-25 12:43 -  
[DIR]Sample_18556Index__2_Dbh_SNS_RNAseq_1-FastQCk6/2017-04-25 12:43 -  
[DIR]Sample_18567SNS_ATAC_+_Rep1FastQCk6/2017-04-25 12:43 -  
[DIR]Sample_18568SNS_ATAC_-_Rep1FastQCk6/2017-04-25 12:43 -  
[DIR]Sample_18569SNS_ATAC_+_Rep2FastQCk6/2017-04-25 12:43 -  
[DIR]Sample_18570SNS_ATAC_-_Rep2FastQCk6/2017-04-25 12:43 -  
[DIR]Sample_18571ENS_ATAC_+_Rep1FastQCk6/2017-04-25 12:43 -  
[DIR]Sample_18572ENS_ATAC_-_Rep1FastQCk6/2017-04-25 12:43 -  
[DIR]Sample_18573ENS_ATAC_+_Rep2FastQCk6/2017-04-25 12:43 -  
[DIR]Sample_18574ENS_ATAC_-_Rep2FastQCk6/2017-04-25 12:43 -  
[DIR]Sample_19451Index__6_W3110_WT_IP_9_28FastQCk6/2017-11-02 22:00 -  
[ ]Sample_19451Index__6_W3110_WT_IP_9_28all.trimmed_filtered.W3110.forward2017-11-29 15:41 2.5M 
[ ]Sample_19451Index__6_W3110_WT_IP_9_28all.trimmed_filtered.W3110.forward.center2017-11-29 15:41 2.5M 
[ ]Sample_19451Index__6_W3110_WT_IP_9_28all.trimmed_filtered.ave2017-11-10 11:22 28K 
[ ]Sample_19451Index__6_W3110_WT_IP_9_28all.trimmed_filtered.avestop2017-11-10 11:22 30K 
[ ]Sample_19451Index__6_W3110_WT_IP_9_28all.trimmed_filtered.map2017-11-07 20:19 421M 
[ ]Sample_19451Index__6_W3110_WT_IP_9_28all.trimmed_filtered.neggene2017-11-09 22:48 62K 
[ ]Sample_19451Index__6_W3110_WT_IP_9_28all.trimmed_filtered.posgene2017-11-09 22:48 61K 
[ ]Sample_19451Index__6_W3110_WT_IP_9_28all.trimmed_filtered.readLength2017-11-09 20:00 584  
[DIR]Sample_19452Index__7_W3110_WT_FT_9_28FastQCk6/2017-11-02 22:00 -  
[ ]Sample_19452Index__7_W3110_WT_FT_9_28all.trimmed_filtered.W3110.forward2017-11-29 15:41 2.4M 
[ ]Sample_19452Index__7_W3110_WT_FT_9_28all.trimmed_filtered.W3110.forward.center2017-11-29 15:41 2.4M 
[ ]Sample_19452Index__7_W3110_WT_FT_9_28all.trimmed_filtered.ave2017-11-10 11:22 28K 
[ ]Sample_19452Index__7_W3110_WT_FT_9_28all.trimmed_filtered.avestop2017-11-10 11:22 30K 
[ ]Sample_19452Index__7_W3110_WT_FT_9_28all.trimmed_filtered.map2017-11-07 20:19 371M 
[ ]Sample_19452Index__7_W3110_WT_FT_9_28all.trimmed_filtered.neggene2017-11-09 22:48 62K 
[ ]Sample_19452Index__7_W3110_WT_FT_9_28all.trimmed_filtered.posgene2017-11-09 22:48 60K 
[ ]Sample_19452Index__7_W3110_WT_FT_9_28all.trimmed_filtered.readLength2017-11-09 20:00 613  
[DIR]Sample_19517AAV9_588_NIH_CPFastQCk6/2017-12-03 00:07 -  
[ ]Sample_19517AAV9_588_NIH_CPall.trimmed2.barcodes2017-12-03 01:05 71M 
[DIR]Sample_19518AAV9_588_NIH_PEGFastQCk6/2017-12-03 00:58 -  
[ ]Sample_19518AAV9_588_NIH_PEGall.trimmed2.barcodes2017-12-03 01:05 63M 
[DIR]Sample_19592Drosophila_ATACseq_NC13FastQCk6/2017-12-06 15:57 -  
[DIR]Sample_19670PLL_BM_Day10FastQCk6/2017-12-20 19:46 -  
[DIR]Sample_19671PU1_BM_Day10FastQCk6/2017-12-20 19:46 -  
[DIR]Sample_19672Lyl1_BM_Day10FastQCk6/2017-12-20 19:46 -  
[DIR]Sample_19673ID2_BM_Day10FastQCk6/2017-12-20 19:46 -  
[DIR]Sample_19674L+L_BM_Day10FastQCk6/2017-12-20 19:46 -  
[DIR]Sample_19675L_P_BM-Day10FastQCk6/2017-12-20 19:46 -  
[DIR]Sample_19676Lmo2_BM_Day10FastQCk6/2017-12-20 19:46 -  
[DIR]Sample_19677EV_BM_Day10FastQCk6/2017-12-20 19:46 -  
[DIR]Sample_19678PH1_pos_1wFastQCk6/2017-12-20 19:43 -  
[DIR]Sample_19679PH2_Neg_5wFastQCk6/2017-12-20 19:43 -  
[DIR]Sample_19739Drosophila_ATACSeq_NC14BFastQCk6/2018-01-11 22:28 -  
[DIR]Sample_19741Drosophila_ATACSeq_zeldaRNAi14DFastQCk6/2017-12-22 21:10 -  
[DIR]Sample_19858Index__12_01182018_SW_resinFastQCk6/2018-01-27 22:20 -  
[DIR]Sample_19859Index__13_01182018_SW_inputFastQCk6/2018-01-27 22:20 -  
[ ]Sample_19931ATACSeq_BHC-A_1.25.18.dm3.30mer.unique.dup.2PowZscore.bigWig2018-04-29 00:18 318M 
[ ]Sample_19931ATACSeq_BHC-A_1.25.18.dm3.30mer.unique.dup.zscore.bigWig2018-04-28 23:37 317M 
[DIR]Sample_20076Index__21_5_EDC_inputFastQCk6/2018-03-18 22:35 -  
[DIR]Sample_20816ATACSeq_BHC11A_Dm08-09-18FastQCk6/2018-09-09 23:30 -  
[DIR]Sample_20817ATACSeq_BHC11B_Dm08-09-18FastQCk6/2018-09-09 23:30 -  
[DIR]Sample_20818ATACSeq_BHC12A_Dm08-09-18FastQCk6/2018-09-09 23:30 -  
[DIR]Sample_20819ATACSeq_BHC13A_Dm08-09-18FastQCk6/2018-09-09 23:30 -  
[DIR]Sample_20820ATACSeq_BHC13B_Dm08-09-18FastQCk6/2018-09-09 23:30 -  
[DIR]Sample_20821ATACSeq_BHC13C_Dm08-09-18FastQCk6/2018-09-09 23:30 -  
[DIR]Sample_20822ATACSeq_opaST6A_Dm08-09-18FastQCk6/2018-09-09 23:30 -  
[DIR]Sample_20823ATACSeq_opaST6B_Dm08-09-18FastQCk6/2018-09-09 23:30 -  
[DIR]Sample_20824ATACSeq_opaST14A_Dm08-09-18FastQCk6/2018-09-09 23:30 -  
[DIR]Sample_20998Index__5_42AB_UBIG_1FastQCk6/2018-11-22 23:46 -  
[DIR]Sample_21485J1-D7-2_13_18-Lmo2FastQCk6/2019-03-18 03:37 -  
[DIR]Sample_21486J2-D7-2_13_18-Lyl1FastQCk6/2019-03-18 03:37 -  
[DIR]Sample_21487J3-D7-2_13_18-L+LFastQCk6/2019-03-18 03:37 -  
[DIR]Sample_21488J4-D7-2_13_18-EVFastQCk6/2019-03-18 03:38 -  
[DIR]Sample_21489J5-D7-2_13_18-ID2FastQCk6/2019-03-18 03:38 -  
[DIR]Sample_21490J6-D7-2_13_18-PU.1FastQCk6/2019-03-18 03:38 -  
[DIR]Sample_21491J7-D7-2_13_18-L+PFastQCk6/2019-03-18 03:38 -  
[DIR]Sample_21492J8-D7-2_13_18-PLLFastQCk6/2019-03-18 03:38 -  
[DIR]Sample_21493D1-19_01_15-Thy-ETPFastQCk6/2019-03-18 03:38 -  
[DIR]Sample_21494D2-19_01_15-Thy-DN2aFastQCk6/2019-03-18 03:38 -  
[DIR]Sample_21495D3-19_01_15-Thy-DN2b-1FastQCk6/2019-03-18 03:38 -  
[DIR]Sample_21496D5-19_01_15-Thy-DN3-1FastQCk6/2019-03-18 03:38 -  
[DIR]Sample_21497Y3-34B+-BBC-18_09_19FastQCk6/2019-03-18 03:38 -  
[DIR]Sample_21498Y4-34-BBC-18_09_19FastQCk6/2019-03-18 03:38 -  
[DIR]Sample_21499Y5-37-BBC-L+L-18_09_19FastQCk6/2019-03-18 03:38 -  
[DIR]Sample_21500Y8-40-BBC_EV_Luc-18_09_19FastQCk6/2019-03-18 03:38 -  
[DIR]Sample_21553W1_BM_D10-2_16-Lmo2FastQCk6/2019-04-10 02:01 -  
[DIR]Sample_21554W2_BM_D10-2_16-Lyl1FastQCk6/2019-04-10 02:01 -  
[DIR]Sample_21555W3_BM_D10-2_16-L_LFastQCk6/2019-04-10 02:01 -  
[DIR]Sample_21556W4_BM_D10-2_16-EVFastQCk6/2019-04-10 02:01 -  
[DIR]Sample_21557W5_BM_D10-2_16-ID2FastQCk6/2019-04-10 02:01 -  
[DIR]Sample_21558W6_BM_D10-2_16-PU.1FastQCk6/2019-04-10 02:01 -  
[DIR]Sample_21559W7_BM_D10-2_16-L_PFastQCk6/2019-04-10 02:01 -  
[DIR]Sample_21560W8_031919_PG11-AFastQCk6/2019-04-10 02:01 -  
[DIR]Sample_21561W9_031919_pEV-AFastQCk6/2019-04-10 02:01 -  
[DIR]Sample_21562W10_031919_PG11-BFastQCk6/2019-04-10 02:01 -  
[DIR]Sample_21563W11_031919_pEV-BFastQCk6/2019-04-10 02:01 -  
[ ]ShendureStromal.mat2019-10-14 15:27 12M 
[ ]Sp7Heatmap_matching_Disp1000_170530.mat2017-05-31 12:15 80K 
[ ]StringDB networks and Monocle_Peng170724.pdf2017-07-24 23:11 26M 
[ ]TFClusters.mat2017-05-15 17:14 6.7M 
[ ]TFInterestingCellsOnlyfromDisp1000OldPax7.mat2017-05-26 20:51 4.5M 
[ ]TFfromDisp1000OldPax7.mat2017-05-26 20:51 15M 
[ ]TwoWayClusteringNew.mat2017-05-14 17:17 3.5M 
[ ]TwoWayNewerPearsonEuclidian.mat2017-05-15 12:34 2.6M 
[ ]TwoWayNewerPearsonPearson.mat2017-05-15 12:34 3.9M 
[ ]TwoWayNewerPearsonSpearman.mat2017-05-15 12:34 2.6M 
[ ]TwoWaySystematic.mat2017-05-16 10:57 2.4M 
[TXT]UCSC.ame.html2017-05-12 17:21 216K 
[TXT]VISTA_2974_elements_July3_2019.Mouse.0.2.txt2019-07-05 07:21 8.1K 
[TXT]VISTA_2974_elements_July3_2019.Mouse.0.4.txt2019-07-05 07:21 3.2K 
[ ]VISTA_2974_elements_July3_2019.bed2019-07-05 07:19 47K 
[TXT]VISTA_2974_elements_July3_2019.short.txt2019-07-13 08:03 89K 
[ ]Workshop.docx2022-02-22 05:09 16K 
[DIR]XunWang/2017-08-02 20:06 -  
[ ]align-star-0.log2017-12-08 08:02 8.9K 
[TXT]ame.html2017-05-12 17:05 353K 
[DIR]bi188/2020-04-28 13:12 -  
[ ]biTSS2018-07-31 10:17 5.9K 
[ ]bowtie170115.condor2017-01-16 21:34 4.6K 
[ ]bowtie180720.condor2018-08-03 12:13 22K 
[ ]bowtie180909.condor2018-09-11 11:29 5.7K 
[ ]bowtie190212.condor2019-03-24 16:15 20K 
[ ]cluster0.1.markers2019-04-24 02:59 80K 
[ ]cluster2.3.markers2019-04-24 02:59 79K 
[ ]cluster4.5.markers2019-04-24 02:59 77K 
[ ]cluster6.7.markers2019-04-24 02:59 77K 
[ ]cluster8.9.markers2019-04-24 02:59 77K 
[ ]cluster10.11.markers2019-04-24 02:59 68K 
[ ]cluster12.13.markers2019-04-24 02:59 72K 
[ ]cluster14.15.markers2019-04-24 02:59 68K 
[ ]cluster16.17.markers2019-04-24 02:59 68K 
[ ]cluster18.19.markers2019-04-24 02:59 68K 
[ ]cluster20.21.markers2019-04-24 02:59 62K 
[ ]cluster22.23.markers2019-04-24 02:59 63K 
[ ]cluster23.24.markers2019-04-24 02:59 66K 
[ ]config2020-09-09 08:05 941  
[ ]count.genes2019-04-11 15:30 5.7M 
[ ]danRer10.50merAligned.sortedByCoordSignal.Unique.str1.out.bg.bigWig2017-12-12 22:48 68M 
[ ]datasets2018-08-21 11:17 1.3K 
[TXT]deduplicated_edit_distance.tsv2017-09-27 21:11 401  
[TXT]deduplicated_per_umi.tsv2017-09-27 21:11 32M 
[TXT]deduplicated_per_umi_per_position.tsv2017-09-27 21:11 544  
[ ]e13.5CellRangerDiane.bigWig2018-01-29 17:08 408M 
[ ]e13.5DianeCellRangerLog.out2018-01-30 12:02 14K 
[ ]e13.5DianeCellRangerSignal.Unique.str1.out.bg2018-01-30 11:12 0  
[ ]e13.5DianeCellRangerSignal.UniqueMultiple.str1.out.bg2018-01-30 11:12 0  
[ ]e13.5FirstTryR1_mm10Aligned.sortedByCoordSignal.UniqueMultiple.str1.out.bg.bigWig2018-01-25 14:24 432M 
[IMG]expect_whitelist2_cell_barcode_count_density.png2017-09-28 18:03 31K 
[IMG]expect_whitelist2_cell_barcode_counts.png2017-09-28 18:03 23K 
[IMG]expect_whitelist2_cell_barcode_knee.png2017-09-28 18:03 25K 
[IMG]expect_whitelist_cell_barcode_count_density.png2018-01-17 21:23 31K 
[IMG]expect_whitelist_cell_barcode_counts.png2018-01-17 21:23 23K 
[IMG]expect_whitelist_cell_barcode_knee.png2018-01-17 21:23 25K 
[IMG]face.gz.png2017-05-09 12:56 13M 
[IMG]faceH3K27acGroup10297.png2017-01-15 21:53 781K 
[IMG]faceH3K27acGroup12937.png2017-01-16 00:39 932K 
[IMG]forebrain-NRSF-H3K27ac.png2018-01-06 21:56 5.9M 
[IMG]forebrain-NRSF.png2018-01-06 21:56 9.2M 
[IMG]forebrain-NRSF2-H3K27ac.png2018-01-06 21:56 6.3M 
[IMG]forebrain-NRSF2.png2018-01-06 21:56 9.3M 
[IMG]forebrain-liver-NRSF-H3K27ac.png2018-01-06 21:56 29M 
[IMG]forebrain-liver-NRSF2-H3K27ac.png2018-01-06 21:55 30M 
[IMG]forebrain.gz.median.png2017-05-09 17:53 9.0M 
[IMG]forebrain.gz.png2017-05-09 16:54 15M 
[IMG]forebrainH3K27me3Group14225.png2018-07-11 21:07 782K 
[IMG]forebrainLate-NRSF.png2018-01-14 20:49 8.5M 
[IMG]forebrain_1fc.png2017-04-23 00:29 7.3M 
[IMG]forebrain_1p.png2017-04-23 00:29 5.7M 
[IMG]forebrain_2fc.png2017-04-23 00:29 7.1M 
[IMG]forebrain_2p.png2017-04-23 00:29 5.5M 
[IMG]forebrain_poolfc.png2017-04-23 00:29 7.2M 
[IMG]forebrain_poolp.png2017-04-23 00:29 5.2M 
[ ]gencode.vV19-tRNAs-ERCC2019-04-11 15:26 3.0M 
[ ]gencode.vV19-tRNAs-ERCC.TSS0.filtered.bed2018-08-31 11:21 6.2M 
[ ]gencode.vV19-tRNAs-ERCC.TSS0.filtered.lincRNA.bed2018-08-31 11:46 249K 
[ ]gencode.vV19-tRNAs-ERCC.TSS0.filtered.protein_coding.bed2018-08-31 11:46 3.9M 
[IMG]hindbrain-NRSF.png2018-01-06 21:56 9.5M 
[IMG]hindbrain-NRSF2.png2018-01-06 21:56 9.5M 
[ ]intestine.gz.out2017-05-23 15:15 617M 
[IMG]intestineH3K27me3Group15637.png2017-05-08 22:19 2.1M 
[ ]kidneyH3K27me3Group15468.out2017-05-08 21:46 15M 
[IMG]kidneyH3K27me3Group15468.png2017-05-08 22:20 2.2M 
[TXT]library.tsv2017-04-05 14:56 20K 
[IMG]liver-NRSF-H3K27ac.png2018-01-06 21:56 5.9M 
[IMG]liver-NRSF-H3K27me3.png2018-01-07 12:58 6.2M 
[IMG]liver-NRSF2-H3K27ac.png2018-01-06 21:56 6.2M 
[IMG]liver.profile.median.png2017-06-25 21:26 18M 
[IMG]liverH3K27me3Group15391.png2017-05-08 22:21 2.5M 
[IMG]liverLate-NRSF.png2018-01-14 21:37 9.6M 
[IMG]lungH3K27me3Group15142.png2017-05-08 22:20 2.6M 
[ ]mesnt0h1all-mm10-M4-male_uniq.bw2017-03-30 14:25 70M 
[IMG]mesnt0h1all-mm10-M4-male_uniq.bw.heatmap.png2017-03-28 23:55 1.5M 
[IMG]mesnt0h1all-mm10-M4-male_uniq.bw.png2017-03-28 23:55 190K 
[IMG]neural-NRSF.png2018-01-06 21:56 9.7M 
[IMG]neural-NRSF2.png2018-01-06 21:56 9.6M 
[IMG]plot.png2019-07-09 07:55 2.8K 
[ ]rdata_filter_out_doublet.h5ad2020-05-07 04:21 431M 
[ ]stats2019-01-25 20:16 3.4K 
[IMG]stomachH3K27me3Group15262.png2017-05-08 22:20 2.3M 
[ ]tSNE_1000Plus_Peng.pptx2017-06-13 12:40 54M 
[ ]test2021-07-14 15:20 750  
[ ]test.out2017-12-10 16:13 1.6K 
[IMG]test.png2017-12-10 15:00 138K 
[TXT]test.txt2018-07-30 22:51 8.6K 
[ ]testcode2022-10-22 14:57 4.4K 
[TXT]testcode.txt2021-10-07 04:18 422K 
[ ]testcode22021-09-25 06:30 30K 
[ ]testcode32020-07-15 04:44 15K 
[ ]testcodeATAC2019-12-01 15:06 29K 
[ ]testcodeFseq2019-03-24 16:13 130K 
[ ]testcodeHOMER2019-03-24 16:13 352K 
[ ]testcodeHOMER22019-03-24 16:13 41K 
[ ]testcodePostBowtie2022-04-21 15:58 89K 
[ ]testcodePostBowtie32019-05-07 03:07 25K 
[ ]testcodeSpp2019-03-24 16:13 10K 
[ ]testcodeStats2019-03-24 16:13 4.4K 
[ ]testcodebigWig2019-03-24 16:13 26K 
[ ]testcodeeRange2019-03-24 16:13 152K 
[ ]testcodehotspot22019-03-24 16:13 192K 
[ ]testcodehotspot222019-03-24 16:13 22K 
[DIR]testtrimfastqc/2016-12-04 23:36 -  
Apache/2.4.59 (Debian) Server at woldlab.caltech.edu Port 80