projects
/
htsworkflow.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅ next
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow into django1.4
[htsworkflow.git]
/
htsworkflow
/
pipelines
/
gerald.py
2013-01-08
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
blob
|
commitdiff
|
raw
2013-01-08
Diane Trout
Tweak timestamp format.
blob
|
commitdiff
|
raw
2012-12-14
Diane Trout
Gerald's time-stamp format was inconsistent.
blob
|
commitdiff
|
raw
|
diff to current
2012-12-13
Diane Trout
Use specific time formatting instead of locale '%c'
blob
|
commitdiff
|
raw
|
diff to current
2012-07-19
Diane Trout
Update save_raw_data to SampleKey api
blob
|
commitdiff
|
raw
|
diff to current
2012-07-10
Diane Trout
Guess genome name for building compressed mapping count...
blob
|
commitdiff
|
raw
|
diff to current
2012-07-07
Diane Trout
Use sample keys when looking up lane parameters.
blob
|
commitdiff
|
raw
|
diff to current
2012-07-05
Diane Trout
Massively rework eland file finding and indexing.
blob
|
commitdiff
|
raw
|
diff to current
2012-06-30
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
blob
|
commitdiff
|
raw
|
diff to current
2012-06-30
Diane Trout
Use different tags indicating gerald or casava style...
blob
|
commitdiff
|
raw
|
diff to current
2012-06-21
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
blob
|
commitdiff
|
raw
|
diff to current
2012-06-12
Diane Trout
Add a software (name) property to firecrest, ipar,...
blob
|
commitdiff
|
raw
|
diff to current
2012-06-11
Diane Trout
Return a gerald version number as a number and not...
blob
|
commitdiff
|
raw
|
diff to current
2012-06-02
Diane Trout
Split lane parameters into seperate classes for GA...
blob
|
commitdiff
|
raw
|
diff to current
2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
blob
|
commitdiff
|
raw
|
diff to current
2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
blob
|
commitdiff
|
raw
|
diff to current
2012-05-16
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
blob
|
commitdiff
|
raw
|
diff to current
2012-05-16
Diane Trout
update summary.py to extract data from HiSeq runs.
blob
|
commitdiff
|
raw
|
diff to current
2012-05-15
Diane Trout
Fix bugs introduduced by the improved HiSeq runfolder...
blob
|
commitdiff
|
raw
|
diff to current
2012-05-12
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
blob
|
commitdiff
|
raw
|
diff to current
2012-05-10
Diane Trout
Minimal changes needed to get raw data archived for...
blob
|
commitdiff
|
raw
|
diff to current
2011-11-05
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
blob
|
commitdiff
|
raw
|
diff to current
2011-11-04
Diane Trout
Use a logger initialized to the module name much more...
blob
|
commitdiff
|
raw
|
diff to current
2011-09-12
Diane Trout
Add support for first-gen HiSeq flowcells (e.g. ABXX)
blob
|
commitdiff
|
raw
|
diff to current
2011-06-30
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
blob
|
commitdiff
|
raw
|
diff to current
2011-06-09
Diane Trout
Add a method to return the runfolder name.
blob
|
commitdiff
|
raw
|
diff to current
2010-04-23
Diane Trout
Update summary script to read from the GERALD Summary...
blob
|
commitdiff
|
raw
|
diff to current
2009-06-17
Diane Trout
Add support for extracting data out of Illumina's new...
blob
|
commitdiff
|
raw
|
diff to current
2009-01-30
Diane Trout
Try to make runfolder results extraction more robust
blob
|
commitdiff
|
raw
|
diff to current
2008-12-10
Diane Trout
The summary parsing code now seems to handle paired...
blob
|
commitdiff
|
raw
|
diff to current
2008-11-06
Diane Trout
Process eland extended (or multi) read files.
blob
|
commitdiff
|
raw
|
diff to current
2008-10-30
Diane Trout
The htsworkflow.pipelines.gerald module was getting...
blob
|
commitdiff
|
raw
|
diff to current
2008-10-30
Diane Trout
Add support for scanning for results in the IPAR directory.
blob
|
commitdiff
|
raw
|
diff to current
2008-10-15
Diane Trout
rename pipeline to pipelines to imply that we can proce...
blob
|
commitdiff
|
raw
|
diff to current