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Fix matching scanned sequence files to library IDs work for hiseq runs.
[htsworkflow.git]
/
htsworkflow
/
submission
/
2012-08-31
Diane Trout
Fix matching scanned sequence files to library IDs...
tree
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commitdiff
2012-08-31
Diane Trout
Inherit from MutableMapping for ResultMap.
tree
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commitdiff
2012-08-31
Diane Trout
Allow option to save/restore a sequence class to a...
tree
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commitdiff
2012-08-28
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-08-09
Diane Trout
Fix some mismatches between variable names in python...
tree
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commitdiff
2012-08-07
Diane Trout
Create a lane to file name turtle data file
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commitdiff
2012-08-06
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-08-01
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-08-01
Diane Trout
GEO wanted both files for a paired lane to be on a...
tree
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commitdiff
2012-07-24
Diane Trout
Get actual list of sequencers used for a library.
tree
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commitdiff
2012-06-25
Diane Trout
Convert dictionary comprehension to dict(generator...
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commitdiff
2012-06-21
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-06-14
Diane Trout
Import information from NCBI SRA into a RDF model.
tree
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commitdiff
2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
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commitdiff
2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-05-12
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-05-12
Diane Trout
Properly constructing the geo soft file really needed...
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commitdiff
2012-04-17
Diane Trout
Rename global logger to LOGGER to be more PEP8 like
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commitdiff
2012-04-13
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-04-11
Diane Trout
Start developing GEO SOFT submission tool.
tree
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commitdiff
2012-04-11
Diane Trout
Move code out of ucsc_gather and into the htsworkflow...
tree
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commitdiff
2012-03-29
Diane Trout
Change to using django templates for generating condor...
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commitdiff
2012-03-07
Diane Trout
Always include the python path when generating the...
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commitdiff
2012-03-07
Diane Trout
Add extract HiSeq project based split fastq files to...
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commitdiff
2012-01-25
Diane Trout
Added scanning for libraries that aren't attached to...
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commitdiff
2012-01-25
Diane Trout
Changed pprint daf attributes to a pformat output via...
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commitdiff
2012-01-23
Diane Trout
Don't use assertIn as older ubuntu python doesn't have it
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commitdiff
2011-12-20
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-12-20
Diane Trout
Add in test code for testing downloading the ucsc downl...
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commitdiff
2011-12-20
Diane Trout
Try to figure out where UCSC is hosting our submitted...
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commitdiff
2011-11-07
Diane Trout
Use Node.uri instead of manually trimming off RDF.Node...
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commitdiff
2011-11-05
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-11-04
Diane Trout
Use a logger initialized to the module name much more...
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commitdiff
2011-11-04
Diane Trout
Lorian renamed some of the libraries, change our hard...
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commitdiff
2011-09-30
Diane Trout
Configure daf variables in only one place. (daf.py)
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commitdiff
2011-09-30
Diane Trout
Add support for new "extraVariables" term in DAF.
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commitdiff
2011-09-02
Diane Trout
Attempt to download DAF data for a encodesubmit submission
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commitdiff
2011-07-29
Diane Trout
Make a test more robust to different versions of librdf
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commitdiff
2011-07-28
Diane Trout
Examine the DAF to determine if the DDF needs to includ...
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commitdiff
2011-07-20
Diane Trout
Stop copying attributes from library to a submission...
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commitdiff
2011-07-07
Diane Trout
Library urls have a trailing /. make sure the test...
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commitdiff
2011-07-07
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-30
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-30
Diane Trout
Older librdf gets cranky when mixing unicode & strings
tree
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commitdiff
2011-06-30
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-29
Diane Trout
Further clean up ddf generation.
tree
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commitdiff
2011-06-23
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-22
Diane Trout
Slightly alter some tests to work with versions of...
tree
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commitdiff
2011-06-22
Diane Trout
Move parse_flowcell_id out of frontend.samples.results
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commitdiff
2011-06-21
Diane Trout
Finish new RDF based ddf construction.
tree
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commitdiff
2011-06-18
Diane Trout
Rework ucsc gather to use RDF models for gathering...
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commitdiff
2011-06-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-17
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-15
Diane Trout
Start to move all the RDF namespace definitions into...
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commitdiff
2011-06-15
Diane Trout
Add module to parse UCSC DAF file.
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commitdiff
2011-06-15
Diane Trout
Move code to make srf and qseq to fastq condor scripts...
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commitdiff