woldlab.caltech.edu Git - htsworkflow.git/history - htsworkflow/pipelines/gerald.py

[htsworkflow.git] / htsworkflow / pipelines / gerald.py

2012-12-13	Diane Trout	Use specific time formatting instead of locale '%c'	blob \| commitdiff \| raw
2012-07-19	Diane Trout	Update save_raw_data to SampleKey api	blob \| commitdiff \| raw \| diff to current
2012-07-10	Diane Trout	Guess genome name for building compressed mapping count...	blob \| commitdiff \| raw \| diff to current
2012-07-07	Diane Trout	Use sample keys when looking up lane parameters.	blob \| commitdiff \| raw \| diff to current
2012-07-05	Diane Trout	Massively rework eland file finding and indexing.	blob \| commitdiff \| raw \| diff to current
2012-06-30	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	blob \| commitdiff \| raw \| diff to current
2012-06-30	Diane Trout	Use different tags indicating gerald or casava style...	blob \| commitdiff \| raw \| diff to current
2012-06-21	Diane Trout	Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...	blob \| commitdiff \| raw \| diff to current
2012-06-12	Diane Trout	Add a software (name) property to firecrest, ipar,...	blob \| commitdiff \| raw \| diff to current
2012-06-11	Diane Trout	Return a gerald version number as a number and not...	blob \| commitdiff \| raw \| diff to current
2012-06-02	Diane Trout	Split lane parameters into seperate classes for GA...	blob \| commitdiff \| raw \| diff to current
2012-05-25	Diane Trout	Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...	blob \| commitdiff \| raw \| diff to current
2012-05-25	Diane Trout	Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...	blob \| commitdiff \| raw \| diff to current
2012-05-16	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	blob \| commitdiff \| raw \| diff to current
2012-05-16	Diane Trout	update summary.py to extract data from HiSeq runs.	blob \| commitdiff \| raw \| diff to current
2012-05-15	Diane Trout	Fix bugs introduduced by the improved HiSeq runfolder...	blob \| commitdiff \| raw \| diff to current
2012-05-12	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	blob \| commitdiff \| raw \| diff to current
2012-05-10	Diane Trout	Minimal changes needed to get raw data archived for...	blob \| commitdiff \| raw \| diff to current
2011-11-05	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	blob \| commitdiff \| raw \| diff to current
2011-11-04	Diane Trout	Use a logger initialized to the module name much more...	blob \| commitdiff \| raw \| diff to current
2011-09-12	Diane Trout	Add support for first-gen HiSeq flowcells (e.g. ABXX)	blob \| commitdiff \| raw \| diff to current
2011-06-30	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	blob \| commitdiff \| raw \| diff to current
2011-06-09	Diane Trout	Add a method to return the runfolder name.	blob \| commitdiff \| raw \| diff to current
2010-04-23	Diane Trout	Update summary script to read from the GERALD Summary...	blob \| commitdiff \| raw \| diff to current
2009-06-17	Diane Trout	Add support for extracting data out of Illumina's new...	blob \| commitdiff \| raw \| diff to current
2009-01-30	Diane Trout	Try to make runfolder results extraction more robust	blob \| commitdiff \| raw \| diff to current
2008-12-10	Diane Trout	The summary parsing code now seems to handle paired...	blob \| commitdiff \| raw \| diff to current
2008-11-06	Diane Trout	Process eland extended (or multi) read files.	blob \| commitdiff \| raw \| diff to current
2008-10-30	Diane Trout	The htsworkflow.pipelines.gerald module was getting...	blob \| commitdiff \| raw \| diff to current
2008-10-30	Diane Trout	Add support for scanning for results in the IPAR directory.	blob \| commitdiff \| raw \| diff to current
2008-10-15	Diane Trout	rename pipeline to pipelines to imply that we can proce...	blob \| commitdiff \| raw \| diff to current

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