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Initial port to python3
[htsworkflow.git]
/
htsworkflow
/
pipelines
/
test
/
simulate_runfolder.py
2013-08-13
Diane Trout
Initial port to python3
python3-django1.5
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2013-01-08
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
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2013-01-08
Diane Trout
Add unaligned stats files to hiseq test case
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2012-11-29
Diane Trout
Remove prints that were being called in test code.
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2012-07-12
Diane Trout
Re-enable some suppressed tests and update them for...
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2012-07-05
Diane Trout
Rename chromosome in hiseq test set to match our fake...
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2012-06-30
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-06-30
Diane Trout
Properly code in tabs for simulated hiseq export files
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2012-06-21
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
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2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
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2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
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2012-05-16
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-05-16
Diane Trout
update summary.py to extract data from HiSeq runs.
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2012-05-15
Diane Trout
Fix bugs introduduced by the improved HiSeq runfolder...
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2012-04-13
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-03-01
Diane Trout
Remove some debug prints
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2012-03-01
Diane Trout
Simulate a HiSeq runfolder.
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2011-11-05
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-10-04
Diane Trout
Add support for flowcells analyzed with Casava 1.7
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2011-09-12
Diane Trout
Add support for first-gen HiSeq flowcells (e.g. ABXX)
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2010-11-01
Diane Trout
Check for s_${lane}_02_matrix.txt as well as s_${lane...
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2010-09-10
Diane Trout
Add support for CASAVA 1.7
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2010-04-23
Diane Trout
Update summary script to read from the GERALD Summary...
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2009-10-02
Diane Trout
Test the updated version of extract results that builds...
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2009-06-17
Diane Trout
Add support for extracting data out of Illumina's new...
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2009-05-05
Diane Trout
Handle lanes that were only sequenced.
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2009-03-28
Diane Trout
For pipeline 1.1rc1 or 1.3.2, look for the matrix files...
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2009-03-28
Diane Trout
Move sample data from simulate_runfolder into testdata
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2009-03-16
Diane Trout
Parse runfolders generated with IPAR 1.3 and pipeline...
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2009-03-10
Diane Trout
Improve support for eland searching a single fasta...
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2008-12-24
Diane Trout
Handle paired-end eland files.
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2008-12-10
Diane Trout
The summary parsing code now seems to handle paired...
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2008-12-09
Diane Trout
Test 1.1rc1 style runs, which unfortunately require...
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2008-12-03
Diane Trout
Add code to create a paired end Summary.htm file
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2008-11-06
Diane Trout
Process eland extended (or multi) read files.
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2008-10-30
Diane Trout
Add support for scanning for results in the IPAR directory.
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