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mark the example submission rule files as being raw, so the escapes dont get confused
[htsworkflow.git] / htsworkflow / util /
2014-10-23 Diane TroutChange unittest2 back into unittest. tree | commitdiff
2014-06-10 Diane TroutIgnore the path when comparing filenames from the md5... tree | commitdiff
2014-01-22 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2014-01-15 Diane TroutAdapter to use PyLD's json-ld parser to add triples... tree | commitdiff
2014-01-15 Diane TroutAdd option to get_model to disable RDF graph context. tree | commitdiff
2014-01-08 Diane TroutRename stripNamespace strip_namespace tree | commitdiff
2013-12-23 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2013-12-17 Diane Troutremove some test code debugging print statements tree | commitdiff
2013-12-17 Diane TroutMerge branch 'django1.4' tree | commitdiff
2013-12-17 Diane TroutMove loading DTD into a function as the call caused... tree | commitdiff
2013-12-05 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-12-05 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-12-05 Diane TroutProvide reporting of what command failed when bigWigInf... tree | commitdiff
2013-12-05 Diane TroutAdd a way to report what url was failing tree | commitdiff
2013-10-21 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-10-17 Diane TroutMerge branch 'master' into django1.4 tree | commitdiff
2013-10-17 Diane TroutFix typo. tree | commitdiff
2013-10-17 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-10-17 Diane TroutImplement a wrapper around bigWigInfo to report bigWig... tree | commitdiff
2013-10-08 Diane TroutBe more forgiving about the md5sum filename path tree | commitdiff
2013-07-22 Diane TroutMove version finding code into the util directory. tree | commitdiff
2013-07-22 Diane Troutturtle writing improvements. tree | commitdiff
2013-07-20 Diane TroutAdd python namespace for encode3 RDF namespace tree | commitdiff
2013-07-17 Diane TroutAdd function to parse scp / ssh style URLs. tree | commitdiff
2013-07-01 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-07-01 Diane Trouttype checking more detailed than Literal doesn't work... tree | commitdiff
2013-06-18 Diane TroutUpdate tests for new version of redland rdf lib. tree | commitdiff
2012-12-13 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkfl... tree | commitdiff
2012-12-12 Diane TroutSimplify linking fastq files to their library id. tree | commitdiff
2012-11-29 Diane TroutRemove prints that were being called in test code. tree | commitdiff
2012-11-28 Diane TroutConvert to unittest2 tree | commitdiff
2012-11-28 Diane TroutConvert to unittest2 tree | commitdiff
2012-11-27 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-11-27 Diane TroutIgnoring the missing type RDF error for the page under... tree | commitdiff
2012-11-20 Diane TroutFix RDF schema problems with lane_number and species. tree | commitdiff
2012-11-20 Diane TroutChange add_default_schema to use pkg_resources feature... tree | commitdiff
2012-11-20 Diane Troutrdf:Resource can be either a resource or a blank node. tree | commitdiff
2012-11-16 Diane TroutFurther attempts to validate RDF models. tree | commitdiff
2012-11-14 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-09-27 Diane Troutolder librdf wanted to include type information when... tree | commitdiff
2012-09-24 Diane TroutDefine XHTML_RDF_DTD as None when we can't load the DTD tree | commitdiff
2012-09-24 Diane TroutMake the public html pages valid xhtml, and validate... tree | commitdiff
2012-09-20 Diane TroutMake a validation error message between different ages... tree | commitdiff
2012-09-20 Diane TroutMinor tweaks to deal with the older version of librdf... tree | commitdiff
2012-09-19 Diane TroutUse htsworkflow ontology to validate various RDF using... tree | commitdiff
2012-09-19 Diane TroutRefactor property type validator to support multiple... tree | commitdiff
2012-09-19 Diane TroutAdd stub xhtml vocab ontology, to make model validation... tree | commitdiff
2012-09-18 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-09-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-09-18 Diane TroutImprovements to rdfinfer. tree | commitdiff
2012-09-18 Diane TroutChange rdfhelp.dump_model so you can specify a destinat... tree | commitdiff
2012-09-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-09-15 Diane TroutStart implementing infering triples. tree | commitdiff
2012-09-12 Diane TroutAnother tweak to allow parser detection to work on... tree | commitdiff
2012-09-11 Diane TroutBetter parser guessing when grabbing plain text from... tree | commitdiff
2012-09-10 Diane TroutAllow retrying retrieving rdf from website a few times. tree | commitdiff
2012-09-01 Diane TroutHave librdf open the urls in load_into_model instead... tree | commitdiff
2012-08-31 Diane TroutAllow option to save/restore a sequence class to a... tree | commitdiff
2012-08-28 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-08-28 Diane Troutsanitize_literal had trouble with empty strings. tree | commitdiff
2012-06-27 Diane TroutAuto-generate a secret key for django and store in... tree | commitdiff
2012-06-21 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-05-25 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-05-25 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-05-23 Diane TroutGenerate html reports when doing sparql queries with... tree | commitdiff
2012-05-16 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-05-16 Diane TroutTweak some test code to work with librdf 1.0.10 tree | commitdiff
2012-05-12 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-05-12 Diane TroutPrepare for submitting data to geo by: tree | commitdiff
2012-05-04 Diane Trout100% test coverage for alphanum.py tree | commitdiff
2012-04-13 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-03-06 Diane TroutAdd module to convert multiple fastq files into a singl... tree | commitdiff
2012-03-06 Diane TroutAdd ability to print out json structures returned by... tree | commitdiff
2012-01-30 Diane TroutAdd ability to refresh library data from our htsw server tree | commitdiff
2012-01-25 Diane Troutsplit a function into two. (A query execute function... tree | commitdiff
2011-12-20 Diane TroutHandle dateTime timestamps in RDF.Nodes tree | commitdiff
2011-12-20 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-12-20 Diane TroutRemove eXecute bit from modules tree | commitdiff
2011-12-20 Diane TroutTry to figure out where UCSC is hosting our submitted... tree | commitdiff
2011-11-07 Diane TroutMerge in removal of queuecommand sleep. tree | commitdiff
2011-11-05 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-11-04 Diane TroutUse a logger initialized to the module name much more... tree | commitdiff
2011-07-29 Diane TroutConstruct unit tests for inventory/hard disk long term... tree | commitdiff
2011-07-20 Diane TroutRemove spurious debugging print statement tree | commitdiff
2011-07-13 Diane TroutMake sure we can roundtrip unicode characters via conve... tree | commitdiff
2011-07-07 Diane TroutDon't use xsd:string for string data types in toTypedNode tree | commitdiff
2011-07-07 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-07-06 Diane TroutAdd some additional logging to util/rdflib.py to help... tree | commitdiff
2011-06-30 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-06-29 Diane TroutFurther clean up ddf generation. tree | commitdiff
2011-06-23 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-06-22 Diane TroutMove parse_flowcell_id out of frontend.samples.results tree | commitdiff
2011-06-21 Diane TroutFinish new RDF based ddf construction. tree | commitdiff
2011-06-18 Diane TroutRework ucsc gather to use RDF models for gathering... tree | commitdiff
2011-06-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-06-17 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-06-15 Diane TroutStart to move all the RDF namespace definitions into... tree | commitdiff
2011-06-15 Diane TroutAdd module to parse UCSC DAF file. tree | commitdiff
2011-06-15 Diane TroutRemove some uneeded linefeeds tree | commitdiff
2011-05-26 Diane TroutMerge branch 'add-condition' tree | commitdiff
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htsworkflow sequencing LIMS software