| 2015-03-20 |
Diane Trout | Use regex to make sure scripts end with the right command |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Use six.moves to find urlencode and urlopen |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | filter out None c.times in list of potential times |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | use relative import for submission_test_common |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Try to detect if an object is a file type on python... |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | replace xrange with enumerate |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Use ''.splitlines() instead of split('\n') |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | adapt to python2 returning lists and python3 iterators |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | use sorted on the iterator instead of an in-place sort |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Use max on the iterator to find the last key |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | add more from __future__ import print_function, unicode... |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Call print(msg) instead of print msg |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | special case unicode handling that differs between... |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Replace some unicode() with str() |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Use isinstance(object, (types)) pattern instead of... |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Specify text vs binary mode for opening files. |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | prefer native string types. |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | update more raise exceptions to Exception(message)... |
tree | commitdiff |
| 2015-03-19 |
Diane Trout | Use django.utils.encode smart_text or smart_str for... |
tree | commitdiff |
| 2015-03-18 |
Diane Trout | import ConfigParser classes from six.moves.configparser |
tree | commitdiff |
| 2015-02-03 |
Diane Trout | convert to unicode_literals |
tree | commitdiff |
| 2015-02-02 |
Diane Trout | take advantage of absolute_import to simplify import... |
tree | commitdiff |
| 2015-02-02 |
Diane Trout | base64.encodestring needs a bytearray in python3 |
tree | commitdiff |
| 2015-02-02 |
Diane Trout | Replace elif list() > int() with else |
tree | commitdiff |
| 2015-01-30 |
Diane Trout | properly call usrlib.parse instead of urlparse |
tree | commitdiff |
| 2015-01-30 |
Diane Trout | Convert alphanum sort from comparitor to key operator |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | update srf2fastq detection code to work with byte arrays |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | assume we are writing text with gzip |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | replace iterkeys with python 3 equivalents |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | convert has_key to X in dictionary |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | use six.moves to work around urllib / urllib2 / urlpars... |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | remove unicode_literals from things going to redland RDF |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | remove some commented out code |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | convert some print statements to logger messages |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | convert to print_function, and start adding unicode_lit... |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | remove ,'s from more except blocks, and now a raise too |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | more use six.moves to import StringIO |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | use six.moves to get to python3-style urllib |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | whitespace-cleanup |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | remove some commented out code |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | convert to print_function |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | use six to work around rename of configparser |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | Convert old style except blocks to except Exception... |
tree | commitdiff |
| 2015-01-28 |
Diane Trout | make the search tool more flexible |
tree | commitdiff |
| 2015-01-21 |
Diane Trout | Update test_retrieve_config to work with factories |
tree | commitdiff |
| 2015-01-14 |
Diane Trout | fix spelling error in module name |
tree | commitdiff |
| 2015-01-13 |
Diane Trout | Don't pass null authentication information to ENCODED. |
tree | commitdiff |
| 2015-01-13 |
Diane Trout | use absolute_import and print_function |
tree | commitdiff |
| 2015-01-10 |
Diane Trout | get_schema_url only works on object types now, so chang... |
tree | commitdiff |
| 2015-01-10 |
Diane Trout | at some point I added code that used base64, hashlib... |
tree | commitdiff |
| 2014-12-13 |
Diane Trout | Merge branch 'django1.7' of mus.cacr.caltech.edu:htswor... |
tree | commitdiff |
| 2014-12-13 |
Diane Trout | Add document registration class. |
tree | commitdiff |
| 2014-12-13 |
Diane Trout | add more type checking for parsing object type from... |
tree | commitdiff |
| 2014-12-13 |
Diane Trout | add some helpful log messages |
tree | commitdiff |
| 2014-12-01 |
Diane Trout | commit script to copy jumpgate sqlite database to felca... |
tree | commitdiff |
| 2014-11-07 |
Diane Trout | Add some code to help read metadata out of spreadsheets. |
tree | commitdiff |
| 2014-10-29 |
Diane Trout | Merge branch 'django1.7' of mus.cacr.caltech.edu:htswor... |
tree | commitdiff |
| 2014-10-27 |
Diane Trout | Change the settings default to work with the two scoops... |
tree | commitdiff |
| 2014-10-23 |
Diane Trout | import os, so we can use os.path.join |
tree | commitdiff |
| 2014-09-12 |
Diane Trout | make it easier to override variables in ENCODED class |
tree | commitdiff |
| 2014-07-25 |
Diane Trout | Use two-scoop style multiple settings file. |
tree | commitdiff |
| 2014-07-24 |
Diane Trout | DCC example code sets both content-type and accept... |
tree | commitdiff |
| 2014-07-24 |
Diane Trout | pep8 whitespace cleanup. |
tree | commitdiff |
| 2014-07-24 |
Diane Trout | Flatten project hierarchy, moving djano applications... |
tree | commitdiff |
| 2014-06-23 |
Diane Trout | whitespace cleanup |
tree | commitdiff |
| 2014-06-23 |
Diane Trout | clean up for pep8 compliance. |
tree | commitdiff |
| 2014-06-23 |
Diane Trout | code cleanup, remove commented out code and adjust... |
tree | commitdiff |
| 2014-06-23 |
Diane Trout | Attempt to split common initial data from wold lab... |
tree | commitdiff |
| 2014-06-23 |
Diane Trout | Remove very old misplaced initial data fixtures |
tree | commitdiff |
| 2014-06-19 |
Diane Trout | Add fields list to a few ModelForms Meta class. |
tree | commitdiff |
| 2014-06-19 |
Diane Trout | Rename get_query_set to get_queryset |
tree | commitdiff |
| 2014-06-19 |
Diane Trout | Rename HttpResponse parameter mimetype to content_type |
tree | commitdiff |
| 2014-06-19 |
Diane Trout | remove file created by typoing file name |
tree | commitdiff |
| 2014-06-19 |
Diane Trout | Change unittest2 back into unittest. |
tree | commitdiff |
| 2014-06-19 |
Diane Trout | Explicitly list initial_data.json for the test data... |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Add post_json as some DCC objects are created with... |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Rename headers to json_headers for requests (seemed... |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Updates to jsonld context for the DCC schemas. |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Update test_encoded test cases due to https now being... |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | DCC switched to https |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Update fastqname code & test code to better support... |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Directly generate compressed fastq files from HiSeq... |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | the filename templates were moved from condorfastq... |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Indicate when desplit_fastq didn't get any files to... |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Make sure we can load a run file that lacks alignment... |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | For some reason the previous integrety fixes, added... |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Postgresql has referential integrety checking. |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Ignore the path when comparing filenames from the md5... |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | use autoopen to access fastq files |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Start implementing tool to compute library fastq quality |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Just use the python 2 url parsers instead of trying... |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Update timestamps in inventory app test data to be... |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | point default flowcell directory to test data |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | add default values for some application specific values |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Configure default STATICFILES_DIRS for static files... |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Mathematica had a suggestion for a fastq mime type... |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Regex pattern was wrong. |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Convert more timestamps to include timezone |
tree | commitdiff |
| 2014-06-10 |
Diane Trout | Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow |
tree | commitdiff |
| 2014-02-18 |
Diane Trout | Add option to compress fastq file |
tree | commitdiff |
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