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Merge branch 'master' into debianized
[htsworkflow.git] / htsworkflow /
2011-02-07 Diane TroutMerge branch 'master' into debianized debianized tree | commitdiff
2011-02-07 Diane TroutAdd in a little bit of qseq2fastq testing code. More... tree | commitdiff
2011-02-07 Diane TroutAdd documentation about which Phred format we're generating tree | commitdiff
2011-02-03 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-02-03 Diane TroutFirst cycle can be 2 digit. tree | commitdiff
2011-01-25 Diane TroutFix typo in a function name. tree | commitdiff
2011-01-25 Diane TroutAdd in 12x / 18x PCR protocol end points from Lorian tree | commitdiff
2011-01-25 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-01-25 rootMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-01-21 Diane TroutMerge branch 'master' of gitosis@mus.cacr.caltech.edu... tree | commitdiff
2011-01-14 rootMake replicate field visable on the public page. tree | commitdiff
2011-01-08 Diane TroutAdd validation script 0.5.0 tree | commitdiff
2010-12-02 Diane TroutMake the inventory login page look a bit nicer. tree | commitdiff
2010-12-02 Diane TroutAdjust some whitespace tree | commitdiff
2010-12-01 Diane TroutThis mildly adjusts the css to be a bit prettier tree | commitdiff
2010-12-01 Diane TroutAdd a new ini-file option to point to the flowcell... tree | commitdiff
2010-11-30 Diane TroutAdd config option notification_bcc for always attaching... tree | commitdiff
2010-11-07 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2010-11-07 Diane TroutVery basic non-ExtJS version of the inventory page tree | commitdiff
2010-11-07 Diane TroutRemove another ExtJS panel reference. tree | commitdiff
2010-11-01 Diane TroutOnly complane about missing genomes if we _wanted_... tree | commitdiff
2010-11-01 Diane TroutCheck for s_${lane}_02_matrix.txt as well as s_${lane... tree | commitdiff
2010-10-28 Diane TroutRemove dependency on ExtJS for library & lanes_for... tree | commitdiff
2010-10-27 Diane TroutThe WITH_SEQUENCE flag needs to be lower-case "true". tree | commitdiff
2010-10-22 Diane TroutReport version number derived from git tag. tree | commitdiff
2010-10-19 Diane TroutSet WITH_SEQUENCE as both a per-lane AND global parameter 0.4.5 tree | commitdiff
2010-10-08 Diane TroutWITH_SEQUENCE is actually a global GERALD option, remov... tree | commitdiff
2010-10-07 Diane TroutUpdate gerald config file generation. tree | commitdiff
2010-10-05 Lorian SchaefferMinor changes to display tree | commitdiff
2010-10-01 Lorian SchaefferRemoved some models from the admin index view tree | commitdiff
2010-10-01 Lorian SchaefferChanged Frequently Used links to be properly relative tree | commitdiff
2010-10-01 Lorian SchaefferRemoved from admin index page tree | commitdiff
2010-10-01 Lorian SchaefferRemoved unused DataRun model from admin index page tree | commitdiff
2010-10-01 Lorian SchaefferRemoved all analysis models from main admin index tree | commitdiff
2010-10-01 Lorian SchaefferLimited which models show up on admin index page tree | commitdiff
2010-09-24 Diane TroutAdjust spoolwatchers use of inotify to correspond to... tree | commitdiff
2010-09-24 Diane TroutHandle the case when a sequencing lane lacks any yield... tree | commitdiff
2010-09-10 Diane TroutAdd support for CASAVA 1.7 tree | commitdiff
2010-08-23 Diane TroutAdd a "All Lanes" option to the control-lane field... tree | commitdiff
2010-08-14 Diane TroutShrink flowcell notes field. tree | commitdiff
2010-08-13 Diane TroutRemove debug print statement tree | commitdiff
2010-08-13 Diane TroutReduce the size of the bioanalyzer summary text box tree | commitdiff
2010-08-13 Diane TroutThis patch adds in fields to support storing bioanalyze... tree | commitdiff
2010-07-14 Diane TroutAdd search field to the lanes admin page tree | commitdiff
2010-07-12 Diane TroutUnder some conditions urlerror doesn't have a code, tree | commitdiff
2010-07-12 Diane TroutReport if a lane was on a paired end flowcell from... tree | commitdiff
2010-07-07 Diane TroutThis still isn't ideal as the RESULTS_HOME_DIR is still... tree | commitdiff
2010-06-15 Diane TroutUpdate the 'flowcell started' email message to include... tree | commitdiff
2010-06-14 Diane TroutRename avg_lib_size to gel_cut_size, and add insert_size tree | commitdiff
2010-06-14 Diane TroutUpdate internal copy of the django admin/templates... tree | commitdiff
2010-06-10 Diane TroutExtend htsworkflow.pipelines.sequences to also try... tree | commitdiff
2010-06-10 Diane TroutMove the code to scan the sequence file archive to... tree | commitdiff
2010-06-10 Diane Troutnew api module actually needed logging. tree | commitdiff
2010-06-10 Diane TroutMove the knowledge of the urls for the REST API to... tree | commitdiff
2010-05-29 Diane TroutAdd in extra fields lorian asked for to library detail... tree | commitdiff
2010-05-14 Brandon KingA patch that allows printing more than 11 labels at... tree | commitdiff
2010-05-13 Brandon KingDefault to pointing to the Ubuntu python location for... tree | commitdiff
2010-05-08 Diane TroutMatches can have trailing AGCT in addition to a number tree | commitdiff
2010-05-07 Brandon KingDisabling 'delete selected'. tree | commitdiff
2010-04-29 Brandon KingAdded a 'Print Labels' action to the Library Admin... tree | commitdiff
2010-04-23 Diane TroutUpdate summary script to read from the GERALD Summary... tree | commitdiff
2010-04-10 Brandon KingWARNING: Django 1.0.2 to Django 1.1.1 compatibility... tree | commitdiff
2010-03-05 Diane TroutReport hidden field in the library API tree | commitdiff
2010-03-05 Diane TroutUse the HTS workflow API to figure out the library... tree | commitdiff
2010-02-22 Diane Troutthere is no such thing as sequence_extended. I was... tree | commitdiff
2010-02-04 Diane TroutReturn affiliation, library name, and comment in the... tree | commitdiff
2010-01-30 Diane TroutUpdate the inventory tracker code for the split from... tree | commitdiff
2010-01-28 Diane TroutAdds a json api 'lanes_for' feature tree | commitdiff
2010-01-28 Diane TroutForce auth_backend error messages to sys stderr, as tree | commitdiff
2010-01-27 Diane TroutRemove debugging code that breaks mod_wsgi tree | commitdiff
2010-01-26 Diane TroutAdded 'lanes_for' which will show recent flowcell lanes... tree | commitdiff
2010-01-22 Diane TroutRefine user handling. tree | commitdiff
2010-01-21 Diane TroutUpdate test code to deal with the switch to storing... tree | commitdiff
2010-01-21 Diane TroutDon't throw an error if library.cell_line is None. tree | commitdiff
2009-12-15 Diane TroutAdd flowcell/lane information for a library to the... tree | commitdiff
2009-12-15 Diane TroutDefine the unicode() function for HTSUser to also repor... tree | commitdiff
2009-12-15 Diane TroutInclude information about the flowcell run date on... tree | commitdiff
2009-12-15 Diane TroutMake the basic library page show up when javascript... tree | commitdiff
2009-12-15 Diane TroutTell people to use the https address so it'll work... tree | commitdiff
2009-12-11 Diane TroutModify the srf utility to tar.bz2 the qseq files instea... tree | commitdiff
2009-11-25 Diane TroutWatch for a list of files to indicate that the flowcell... tree | commitdiff
2009-11-13 Diane TroutOverride extjs's rather harsh stylesheet so the library... tree | commitdiff
2009-11-10 Diane TroutDon't add the post_run_command unless the option and... tree | commitdiff
2009-11-10 Diane TroutRemport that the pipeline will be done in X to Y days... tree | commitdiff
2009-10-27 Diane Troutupdate inventory status template to use new field name... tree | commitdiff
2009-10-27 Diane TroutTurn the library_id back into the primary key for sampl... tree | commitdiff
2009-10-17 Diane TroutFigure out the absolute path to the runfolder for passi... tree | commitdiff
2009-10-08 Diane TroutAlso use the javascript dual panel choice box for tags. tree | commitdiff
2009-10-08 Diane TroutIn some cases test_retrive_config will attempt to norma... tree | commitdiff
2009-10-08 Diane TroutUse raw_id_fields for the library ID in the Flowcell... tree | commitdiff
2009-10-08 Diane TroutAdd the ability not to build srf files. tree | commitdiff
2009-10-06 Diane TroutAdd an account number field to a library. (Note SCHEMA... tree | commitdiff
2009-10-06 Diane TroutAdd a bread crumb to the send started email page. tree | commitdiff
2009-10-06 Diane TroutRemove spurious print tree | commitdiff
2009-10-06 Diane TroutTest that the email notification actually generates... tree | commitdiff
2009-10-06 Diane TroutUse eland_extended or eland_pair instead of eland for... tree | commitdiff
2009-10-06 Diane TroutDefault to sequencing if we don't have a genome for... tree | commitdiff
2009-10-02 Diane TroutTest the updated version of extract results that builds... tree | commitdiff
2009-09-30 Diane TroutAdd building srf files to runfolder as part of --extrac... tree | commitdiff
2009-09-28 Diane TroutModify hdquery to not die when being imported on non... tree | commitdiff
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htsworkflow sequencing LIMS software