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Remove some now unnecessary coments and reformat some parameter lists to be easier...
2011-06-13
Diane Trout
Remove some now unnecessary coments and reformat some...
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2011-06-11
Diane Trout
python's 2.6 uuid function doesn't cast to a string...
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2011-06-11
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-06-11
Diane Trout
Convert Rami's DataRun feature to something useful...
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2011-06-09
Diane Trout
Move test srf files to testdata directory so I can...
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2011-06-09
Diane Trout
Add a method to return the runfolder name.
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2011-05-27
Diane Trout
Add in test code to verify RDF data being added to...
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2011-05-27
Diane Trout
Trivial change, add human to common name of "homo sapiens"
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2011-05-26
Diane Trout
Merge branch 'add-condition'
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2011-05-25
Diane Trout
Make antibody & condition visible.
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2011-05-18
Diane Trout
Write the librdf model database somewhere other than...
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2011-05-16
Diane Trout
Pretty print the json files to help debugging
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2011-05-16
Diane Trout
Allow configuring additional database settings so we...
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2011-05-09
Diane Trout
Add fake settings.py file point to the real htsworkflow...
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2011-05-09
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-05-09
Diane Trout
Move default_pm setting to a little more predictable...
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2011-05-09
Diane Trout
Keep moving settings around until I can find a place...
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2011-05-09
Diane Trout
Add utility program to help find what exists in georgi...
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2011-05-09
Diane Trout
Report missing directory names to help diagnose sequence...
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2011-05-09
Diane Trout
Validate fastq files in both phred33 & phred64 versions
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2011-04-06
Diane Trout
django-nose didn't work with django 1.1, so I went...
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2011-04-05
Diane Trout
Adjust django driver script to test the whole package.
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2011-04-05
Diane Trout
Revert a bad change. Apparently past me knew what I...
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2011-04-05
Diane Trout
remove spurious debugging print
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2011-04-02
Diane Trout
Remove spurious debug print statements
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2011-04-02
Diane Trout
Fix a typo inserted into the template.
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2011-04-02
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-04-02
Diane Trout
Add pages to show information about a particular flowcell.
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2011-03-30
Diane Trout
Update single vs paired guessing code
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2011-03-09
Diane Trout
Update spoolwatcher to 0.2 benderjab's logging api
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2011-03-07
Diane Trout
Move some common runfolder path management code into...
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2011-03-07
Diane Trout
Add a place for "breadcrumbs" back into the base.html...
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2011-02-26
Diane Trout
Ignore emacs backup files for things other than python...
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2011-02-26
Diane Trout
Save the overrides to the RDF model.
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2011-02-26
Diane Trout
Only pull web data when its missing from the rdf model.
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2011-02-17
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-02-17
Diane Trout
Major updateds to encode_find for extracting encode...
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2011-02-17
Diane Trout
Only use one name for dates on the page.
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2011-02-17
Diane Trout
Minor RDFa cleanups
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2011-02-17
Diane Trout
Change default font size to 14pt
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2011-02-17
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-02-17
Diane Trout
Add RDFa data to our library pages.
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2011-02-17
Diane Trout
Add a small comment defining "results_dir"
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2011-02-16
Diane Trout
Add in patterns for Encode Elements submission
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2011-02-15
Diane Trout
Starting component to try and figure out what we've...
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2011-02-15
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-02-15
Diane Trout
Make plus/minus bigwig filename extension a bit more...
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2011-02-14
Diane Trout
Add in support for generating md5sums for files
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2011-02-07
Diane Trout
Add in a little bit of qseq2fastq testing code. More...
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2011-02-07
Diane Trout
Add documentation about which Phred format we're generating
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2011-02-03
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-02-03
Diane Trout
First cycle can be 2 digit.
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2011-01-25
Diane Trout
Fix typo in a function name.
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2011-01-25
Diane Trout
Add in 12x / 18x PCR protocol end points from Lorian
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2011-01-25
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-01-25
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-01-21
Diane Trout
Update view names as per Cricket for the Jan 21st encode...
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2011-01-21
Diane Trout
Merge branch 'master' of gitosis@mus.cacr.caltech.edu...
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2011-01-21
Diane Trout
Add function to ucsc submission tool to make symlink...
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2011-01-12
Diane Trout
Include version.py in source distribution for setup.py
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2011-01-08
Diane Trout
Add validation script
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2011-01-04
Diane Trout
Rename all the scripts to start with htsw-
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2010-12-21
Diane Trout
Add utility to fix the off-by-3 error in the amplified...
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2010-12-02
Diane Trout
Make the inventory login page look a bit nicer.
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2010-12-02
Diane Trout
Adjust some whitespace
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2010-12-01
Diane Trout
This mildly adjusts the css to be a bit prettier
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2010-12-01
Diane Trout
Add a new ini-file option to point to the flowcell...
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2010-11-30
Diane Trout
Add config option notification_bcc for always attaching...
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2010-11-17
Diane Trout
Cache the attributes for each type of fastq file.
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2010-11-16
Diane Trout
Map junctions.bed to the Junctions view.
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2010-11-16
Diane Trout
Autodetect location of *2fastq scripts
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2010-11-15
Diane Trout
Don't count failed flowcells when guessing if a library...
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2010-11-07
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2010-11-07
Diane Trout
Very basic non-ExtJS version of the inventory page
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2010-11-07
Diane Trout
Remove another ExtJS panel reference.
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2010-11-05
Diane Trout
Update to the new UCSC DAF file.
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2010-11-03
Diane Trout
Create a class to handle mapping extension to ucsc...
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2010-11-02
Diane Trout
Two lines between functions (trivial change)
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2010-11-01
Diane Trout
Only complane about missing genomes if we _wanted_...
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2010-11-01
Diane Trout
Check for s_${lane}_02_matrix.txt as well as s_${lane...
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2010-10-28
Diane Trout
Remove dependency on ExtJS for library & lanes_for...
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2010-10-27
Diane Trout
The WITH_SEQUENCE flag needs to be lower-case "true".
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2010-10-22
Diane Trout
Report version number derived from git tag.
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2010-10-19
Diane Trout
Set WITH_SEQUENCE as both a per-lane AND global parameter
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2010-10-08
Diane Trout
WITH_SEQUENCE is actually a global GERALD option, remove...
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2010-10-07
Diane Trout
Update gerald config file generation.
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2010-09-30
Diane Trout
Ignore some files generated by python
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2010-09-24
Diane Trout
Adjust spoolwatchers use of inotify to correspond to...
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2010-09-24
Diane Trout
Handle the case when a sequencing lane lacks any yield...
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2010-09-24
Diane Trout
Remind myself that dry-run doesn't work with the extract...
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2010-09-10
Diane Trout
Add support for CASAVA 1.7
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2010-08-24
Diane Trout
Better detect which program ids generated CNF4 srf...
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2010-08-24
Diane Trout
Split parts of build_fastqs into a seperate function.
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2010-08-23
Diane Trout
Add a "All Lanes" option to the control-lane field...
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2010-08-14
Diane Trout
Shrink flowcell notes field.
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2010-08-14
Diane Trout
Don't offer to track flowcell config files in svn
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2010-08-13
Diane Trout
Remove debug print statement
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2010-08-13
Diane Trout
Reduce the size of the bioanalyzer summary text box
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2010-08-13
Diane Trout
Tell git to ignore *.py[co]~ files.
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2010-08-13
Diane Trout
This patch adds in fields to support storing bioanalyzer...
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